Wall clock time and date at job start Sat Apr 11 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99544 * 2 1 4 4 H 1.48506 * 109.47248 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46973 * 299.99458 * 3 2 1 6 6 H 1.48497 * 109.47415 * 59.99745 * 3 2 1 7 7 C 1.38807 * 120.00749 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00575 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99574 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99835 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.40802 * 32.53755 * 10 9 7 12 12 C 1.54836 * 110.45726 * 269.92563 * 10 9 7 13 13 C 1.54838 * 102.73025 * 203.05788 * 12 10 9 14 14 C 1.56369 * 104.40019 * 38.70363 * 13 12 10 15 15 H 1.08992 * 112.70806 * 97.96842 * 14 13 12 16 16 C 1.54828 * 108.82479 * 223.95530 * 14 13 12 17 17 N 1.48331 * 104.13024 * 137.54504 * 16 14 13 18 18 C 1.34777 * 128.19725 * 138.24013 * 17 16 14 19 19 O 1.21703 * 120.00024 * 179.67620 * 18 17 16 20 20 C 1.46655 * 120.00110 * 359.94766 * 18 17 16 21 21 C 1.36551 * 125.99020 * 179.44344 * 20 18 17 22 22 C 1.40363 * 106.70907 * 179.85347 * 21 20 18 23 23 C 1.35135 * 107.11375 * 0.41095 * 22 21 20 24 24 C 1.50699 * 125.61740 * 179.78149 * 23 22 21 25 25 F 1.39898 * 109.47492 * 209.98201 * 24 23 22 26 26 F 1.39898 * 109.47001 * 329.98196 * 24 23 22 27 27 O 1.33928 * 108.76621 * 359.74551 * 23 22 21 28 28 C 1.48335 * 103.60791 * 317.97530 * 17 16 14 29 29 C 1.54143 * 110.45487 * 154.99966 * 10 9 7 30 30 H 1.09002 * 111.89788 * 18.86934 * 29 10 9 31 31 H 0.97001 * 120.00499 * 0.02562 * 1 2 3 32 32 H 0.96998 * 119.99920 * 359.97438 * 9 7 2 33 33 H 1.08997 * 110.76231 * 321.36860 * 12 10 9 34 34 H 1.08999 * 110.75727 * 84.56447 * 12 10 9 35 35 H 1.09004 * 110.45775 * 156.94996 * 13 12 10 36 36 H 1.09005 * 110.45820 * 279.38337 * 13 12 10 37 37 H 1.09002 * 110.58114 * 18.87863 * 16 14 13 38 38 H 1.09009 * 110.52660 * 256.18063 * 16 14 13 39 39 H 1.07999 * 126.64435 * 359.97438 * 21 20 18 40 40 H 1.07991 * 126.44221 * 180.15045 * 22 21 20 41 41 H 1.08999 * 109.47185 * 89.97921 * 24 23 22 42 42 H 1.09003 * 110.47071 * 160.70172 * 28 17 16 43 43 H 1.09005 * 110.46487 * 283.15978 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8912 2.3965 -1.2126 6 1 1.8912 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9941 -3.5552 0.5500 12 6 2.3273 -4.1263 -1.4502 13 6 2.5260 -5.6528 -1.2834 14 6 1.4711 -6.0668 -0.2059 15 1 0.5608 -6.4762 -0.6438 16 6 2.1400 -7.0320 0.8031 17 7 1.6473 -6.5727 2.1247 18 6 1.2377 -7.3216 3.1677 19 8 0.8649 -6.7837 4.1938 20 6 1.2468 -8.7847 3.0683 21 6 0.8702 -9.6580 4.0482 22 6 1.0353 -10.9492 3.5233 23 6 1.5083 -10.8096 2.2652 24 6 1.8386 -11.9372 1.3216 25 9 2.8706 -11.5409 0.4643 26 9 2.2464 -13.0558 2.0562 27 8 1.6344 -9.5040 1.9947 28 6 1.7183 -5.0941 2.0290 29 6 1.1942 -4.7778 0.6109 30 1 0.1357 -4.5176 0.6168 31 1 -0.4851 0.8400 -0.0004 32 1 0.3557 -2.3880 0.0005 33 1 1.4701 -3.9159 -2.0896 34 1 3.2278 -3.6577 -1.8472 35 1 2.3229 -6.1682 -2.2222 36 1 3.5380 -5.8702 -0.9416 37 1 3.2255 -6.9488 0.7511 38 1 1.8262 -8.0589 0.6153 39 1 0.5125 -9.4042 5.0351 40 1 0.8277 -11.8795 4.0311 41 1 0.9557 -12.1903 0.7346 42 1 1.0808 -4.6323 2.7829 43 1 2.7478 -4.7540 2.1416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026409049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:45 Heat of formation + Delta-G solvation = -114.928793 kcal Electronic energy + Delta-G solvation = -29557.798274 eV Core-core repulsion = 25047.098624 eV Total energy + Delta-G solvation = -4510.699650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -50.12790 -48.16388 -43.96095 -41.36544 -39.68523 -36.78832 -35.07032 -34.38783 -32.67752 -32.50126 -30.80949 -29.82361 -27.74741 -26.63536 -25.17851 -24.63211 -23.11746 -22.67637 -21.61997 -20.91454 -20.40613 -19.23333 -18.95866 -18.76116 -18.36025 -18.13939 -17.53395 -17.25963 -17.02366 -16.44069 -15.94091 -15.55474 -15.37746 -15.14376 -14.91151 -14.83330 -14.69929 -14.52949 -14.30281 -14.18419 -13.94184 -13.84607 -13.71942 -13.27491 -13.00494 -12.92793 -12.60754 -12.56017 -12.37882 -12.07160 -12.05930 -11.69476 -11.59837 -11.50917 -11.44313 -11.36710 -11.27323 -10.88526 -10.19654 -9.81961 -8.96596 -7.93361 -5.20911 -0.32907 0.99263 1.07078 1.47200 1.47951 1.57444 1.70158 1.89858 2.56639 2.62578 3.05162 3.24869 3.40058 3.44265 3.60004 3.67792 3.73564 3.79353 3.87404 4.02796 4.15656 4.23586 4.35774 4.38487 4.41221 4.48867 4.54446 4.63584 4.65420 4.70909 4.81014 4.87524 4.96774 5.06869 5.08653 5.12700 5.24965 5.39492 5.46143 5.52138 5.55355 5.62979 6.26192 6.29370 6.71598 7.35112 8.12452 8.33810 9.30527 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022689 B = 0.002424 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.765270 B =11548.209309 C =12451.876037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.297 1.297 7 C -0.232 4.232 8 H 0.077 0.923 9 N -0.735 5.735 10 C 0.176 3.824 11 H 0.056 0.944 12 C -0.138 4.138 13 C -0.100 4.100 14 C -0.091 4.091 15 H 0.100 0.900 16 C 0.106 3.894 17 N -0.613 5.613 18 C 0.612 3.388 19 O -0.561 6.561 20 C -0.068 4.068 21 C -0.122 4.122 22 C -0.162 4.162 23 C -0.078 4.078 24 C 0.364 3.636 25 F -0.201 7.201 26 F -0.187 7.187 27 O -0.145 6.145 28 C 0.118 3.882 29 C -0.103 4.103 30 H 0.068 0.932 31 H 0.249 0.751 32 H 0.371 0.629 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.173 0.827 40 H 0.195 0.805 41 H 0.191 0.809 42 H 0.059 0.941 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 -30.219 0.720 30.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.225 1.225 7 C -0.364 4.364 8 H 0.095 0.905 9 N -0.374 5.374 10 C 0.067 3.933 11 H 0.074 0.926 12 C -0.178 4.178 13 C -0.138 4.138 14 C -0.110 4.110 15 H 0.118 0.882 16 C -0.015 4.015 17 N -0.344 5.344 18 C 0.402 3.598 19 O -0.442 6.442 20 C -0.120 4.120 21 C -0.142 4.142 22 C -0.181 4.181 23 C -0.131 4.131 24 C 0.311 3.689 25 F -0.182 7.182 26 F -0.168 7.168 27 O -0.041 6.041 28 C -0.004 4.004 29 C -0.123 4.123 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.203 0.797 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.191 0.809 40 H 0.212 0.788 41 H 0.207 0.793 42 H 0.078 0.922 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.224 -29.752 1.075 30.069 hybrid contribution -0.219 1.620 0.440 1.692 sum 4.005 -28.132 1.515 28.456 Atomic orbital electron populations 1.69817 1.06616 1.25790 1.60028 1.25517 0.96302 1.01001 1.04229 0.85140 0.78392 0.80217 0.76446 1.18881 1.22213 1.22501 1.19657 0.91427 0.85180 1.40156 0.90478 1.42673 1.05321 1.01035 1.88335 1.21389 0.93517 0.83811 0.94540 0.92568 1.23030 1.00604 0.96041 0.98135 1.22710 0.98327 0.94249 0.98512 1.23184 0.99565 0.93127 0.95140 0.88186 1.23122 0.99741 0.99465 0.79166 1.49174 1.62129 1.08199 1.14906 1.16423 0.77551 0.83462 0.82408 1.90887 1.50907 1.71990 1.30434 1.21901 1.10531 0.91344 0.88263 1.22284 0.99830 0.91580 1.00545 1.21932 1.03067 0.99670 0.93399 1.23831 1.06844 0.83728 0.98678 1.20136 0.89757 0.77231 0.81783 1.93052 1.63159 1.91119 1.70915 1.93064 1.92339 1.52219 1.79177 1.84095 1.66069 1.16593 1.37321 1.22576 1.01713 0.78540 0.97573 1.22917 0.99711 0.96034 0.93667 0.91316 0.94211 0.79708 0.93270 0.92457 0.89701 0.89678 0.88606 0.88124 0.80927 0.78767 0.79270 0.92197 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.83 13.06 21.65 0.28 -59.55 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 7 C -0.23 -12.67 9.96 84.03 0.84 -11.83 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.73 -36.16 5.20 -318.15 -1.66 -37.81 16 10 C 0.18 6.49 3.06 46.00 0.14 6.63 16 11 H 0.06 2.09 7.13 -2.39 -0.02 2.07 16 12 C -0.14 -4.31 6.57 31.85 0.21 -4.10 16 13 C -0.10 -2.12 6.41 32.39 0.21 -1.91 16 14 C -0.09 -2.06 4.10 -8.28 -0.03 -2.09 16 15 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 16 C 0.11 2.20 6.31 86.65 0.55 2.75 16 17 N -0.61 -16.95 3.31 -810.64 -2.68 -19.63 16 18 C 0.61 18.33 7.89 86.44 0.68 19.01 16 19 O -0.56 -20.82 17.15 -4.36 -0.07 -20.90 16 20 C -0.07 -1.58 6.98 24.07 0.17 -1.42 16 21 C -0.12 -2.29 10.62 22.39 0.24 -2.05 16 22 C -0.16 -2.09 10.42 22.07 0.23 -1.86 16 23 C -0.08 -1.06 6.93 24.97 0.17 -0.89 16 24 C 0.36 2.89 5.82 71.24 0.41 3.31 16 25 F -0.20 -2.68 17.31 44.97 0.78 -1.90 16 26 F -0.19 -1.88 17.02 44.97 0.77 -1.12 16 27 O -0.14 -2.75 7.79 -5.00 -0.04 -2.79 16 28 C 0.12 3.71 6.57 86.52 0.57 4.28 16 29 C -0.10 -3.22 3.59 -9.19 -0.03 -3.26 16 30 H 0.07 2.45 7.79 -2.39 -0.02 2.44 16 31 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.37 19.96 7.60 -92.71 -0.70 19.25 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.08 1.54 7.26 -2.38 -0.02 1.52 16 37 H 0.10 1.74 7.25 -2.39 -0.02 1.72 16 38 H 0.10 1.82 5.50 -2.38 -0.01 1.81 16 39 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 40 H 0.20 1.27 8.06 -2.91 -0.02 1.24 16 41 H 0.19 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.06 2.19 7.88 -2.39 -0.02 2.17 16 43 H 0.09 2.58 7.22 -2.38 -0.02 2.57 16 Total: -1.00 -72.89 363.03 4.58 -68.31 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.36 Total: 24.52 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 4.81 Total: 2.53 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -4.05 Total: -117.00 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.11 Total: -23.69 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 1.54 Total: -3.02 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -72.89 4.58 -68.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026409049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.619 kcal (2) G-P(sol) polarization free energy of solvation -72.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds