Wall clock time and date at job start Sat Apr 11 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99886 * 2 1 4 4 H 1.48498 * 109.47101 * 270.00300 * 3 2 1 5 5 H 1.48504 * 109.46834 * 30.00465 * 3 2 1 6 6 H 1.48500 * 109.46925 * 150.00179 * 3 2 1 7 7 C 1.38810 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.47861 * 126.94414 * 359.97438 * 9 7 2 11 11 C 1.56027 * 105.10313 * 182.02336 * 10 9 7 12 12 H 1.08992 * 116.24705 * 158.83637 * 11 10 9 13 13 C 1.57085 * 99.60521 * 32.80309 * 11 10 9 14 14 C 1.49290 * 126.94104 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.78877 * 16.28648 * 14 9 7 16 16 C 1.56018 * 104.09259 * 246.67718 * 14 9 7 17 17 N 1.47877 * 105.19123 * 288.71888 * 16 14 9 18 18 C 1.34774 * 126.94395 * 182.02051 * 17 16 14 19 19 O 1.21558 * 119.99661 * 174.10199 * 18 17 16 20 20 C 1.47785 * 119.99895 * 354.09737 * 18 17 16 21 21 C 1.40618 * 119.73020 * 185.62202 * 20 18 17 22 22 C 1.35973 * 120.81383 * 179.68032 * 21 20 18 23 23 F 1.35092 * 120.01650 * 180.27903 * 22 21 20 24 24 C 1.40893 * 119.96637 * 0.61716 * 22 21 20 25 25 C 1.40443 * 121.04624 * 179.64314 * 24 22 21 26 26 C 1.36148 * 119.73002 * 180.02562 * 25 24 22 27 27 C 1.39364 * 120.99931 * 359.95526 * 26 25 24 28 28 C 1.36091 * 120.94874 * 0.04509 * 27 26 25 29 29 C 1.40660 * 119.66377 * 359.97438 * 28 27 26 30 30 C 1.38476 * 119.73591 * 5.89656 * 20 18 17 31 31 H 0.96999 * 119.99729 * 359.97438 * 1 2 3 32 32 H 1.08997 * 110.32037 * 63.11941 * 10 9 7 33 33 H 1.09003 * 110.40281 * 300.96826 * 10 9 7 34 34 H 1.09000 * 112.36413 * 191.71391 * 13 11 10 35 35 H 1.09000 * 112.44577 * 64.30277 * 13 11 10 36 36 H 1.08995 * 110.31720 * 47.67566 * 16 14 9 37 37 H 1.08999 * 110.31651 * 169.76085 * 16 14 9 38 38 H 1.07992 * 119.59768 * 0.02562 * 21 20 18 39 39 H 1.07999 * 120.13368 * 0.02562 * 25 24 22 40 40 H 1.07992 * 119.50497 * 179.97438 * 26 25 24 41 41 H 1.07991 * 119.52802 * 180.02562 * 27 26 25 42 42 H 1.08005 * 120.16913 * 180.02562 * 28 27 26 43 43 H 1.07998 * 120.25003 * 359.97249 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1422 -2.5668 0.0005 11 6 -0.3637 -4.1104 0.0532 12 1 -1.3358 -4.4458 0.4145 13 6 0.8848 -4.5252 0.9115 14 6 1.9103 -3.7617 -0.0005 15 1 2.9620 -3.8479 0.2723 16 6 1.5078 -4.3459 -1.3901 17 7 0.0512 -4.5857 -1.3025 18 6 -0.7399 -5.1224 -2.2525 19 8 -1.9063 -5.3619 -2.0079 20 6 -0.1894 -5.4196 -3.5914 21 6 -1.0449 -5.8678 -4.6134 22 6 -0.5630 -6.1416 -5.8550 23 9 -1.4004 -6.5659 -6.8265 24 6 0.8112 -5.9892 -6.1260 25 6 1.3344 -6.2726 -7.3981 26 6 2.6668 -6.1165 -7.6303 27 6 3.5243 -5.6775 -6.6232 28 6 3.0539 -5.3932 -5.3782 29 6 1.6831 -5.5430 -5.1009 30 6 1.1657 -5.2599 -3.8278 31 1 -0.4850 0.8401 0.0004 32 1 -0.5745 -2.1534 -0.9107 33 1 -0.5823 -2.0913 0.8771 34 1 1.0498 -5.6026 0.9097 35 1 0.8477 -4.1202 1.9228 36 1 1.7262 -3.6276 -2.1803 37 1 2.0351 -5.2819 -1.5742 38 1 -2.0986 -5.9910 -4.4112 39 1 0.6824 -6.6130 -8.1890 40 1 3.0653 -6.3359 -8.6097 41 1 4.5771 -5.5617 -6.8336 42 1 3.7297 -5.0534 -4.6072 43 1 1.8192 -4.9192 -3.0384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032435890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:03 Heat of formation + Delta-G solvation = 49.542640 kcal Electronic energy + Delta-G solvation = -29337.104748 eV Core-core repulsion = 25264.306339 eV Total energy + Delta-G solvation = -4072.798408 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.133 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -49.03055 -40.80895 -39.84743 -38.05685 -36.15127 -33.88370 -32.69358 -31.67174 -30.64532 -29.77226 -28.74362 -28.45899 -25.56125 -24.69641 -23.60655 -23.29364 -22.02128 -20.94608 -19.98967 -19.02471 -18.35977 -17.63545 -17.15158 -16.72028 -16.01419 -15.81117 -15.72956 -15.32715 -15.15291 -14.77786 -14.41432 -14.22750 -13.98756 -13.72226 -13.48167 -13.36449 -13.18169 -12.87849 -12.67904 -12.04106 -11.89123 -11.78396 -11.47685 -11.30286 -11.27522 -11.27325 -11.08766 -10.91168 -10.68433 -10.62801 -10.23479 -10.12653 -10.00949 -9.72414 -9.64513 -8.91165 -8.76254 -8.14053 -7.99925 -7.00010 -5.82989 -3.18213 0.17157 0.58889 1.71966 2.39106 3.15037 3.33565 3.38188 3.39738 3.41263 3.91317 4.01240 4.34408 4.36164 4.48937 4.65230 4.68791 4.89291 4.95989 5.03366 5.09480 5.10893 5.20982 5.27637 5.46349 5.49573 5.53509 5.58147 5.68092 5.68838 5.73359 5.89477 5.96929 6.00953 6.06646 6.18767 6.21799 6.27290 6.31434 6.38363 6.49473 6.55891 6.58089 6.72737 7.35209 7.40779 7.65508 7.92737 8.03153 8.43577 9.03389 9.64606 10.32458 11.29036 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.003548 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.361766 B = 7890.258076 C = 8893.669852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.082 0.918 9 N -0.596 5.596 10 C 0.173 3.827 11 C 0.099 3.901 12 H 0.117 0.883 13 C -0.152 4.152 14 C 0.140 3.860 15 H 0.109 0.891 16 C 0.069 3.931 17 N -0.597 5.597 18 C 0.570 3.430 19 O -0.548 6.548 20 C -0.095 4.095 21 C -0.100 4.100 22 C 0.095 3.905 23 F -0.134 7.134 24 C -0.066 4.066 25 C -0.107 4.107 26 C -0.108 4.108 27 C -0.115 4.115 28 C -0.094 4.094 29 C -0.039 4.039 30 C -0.104 4.104 31 H 0.255 0.745 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.148 0.852 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.136 0.864 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.531 -13.826 -10.068 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.099 0.901 9 N -0.320 5.320 10 C 0.048 3.952 11 C -0.003 4.003 12 H 0.135 0.865 13 C -0.192 4.192 14 C 0.031 3.969 15 H 0.127 0.873 16 C -0.056 4.056 17 N -0.329 5.329 18 C 0.360 3.640 19 O -0.428 6.428 20 C -0.099 4.099 21 C -0.120 4.120 22 C 0.076 3.924 23 F -0.113 7.113 24 C -0.067 4.067 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.112 4.112 29 C -0.039 4.039 30 C -0.122 4.122 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.165 0.835 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.760 -13.687 -10.024 17.916 hybrid contribution 0.142 0.910 -0.473 1.035 sum 5.902 -12.777 -10.497 17.558 Atomic orbital electron populations 1.69910 1.04981 1.25445 1.56082 1.24824 0.95668 0.97761 1.01796 0.86124 0.78593 0.83423 0.77596 1.21577 1.21643 1.20583 1.19037 0.90412 0.81989 1.44863 0.90060 1.45232 1.01295 0.99229 1.86207 1.21955 0.84716 0.86989 1.01546 1.24443 0.98101 0.97644 0.80088 0.86528 1.24179 0.96609 0.99050 0.99343 1.23214 0.96768 0.86406 0.90494 0.87285 1.23740 0.80448 0.98829 1.02586 1.49101 1.09197 1.59187 1.15441 1.17683 0.85302 0.77774 0.83278 1.90743 1.16618 1.54329 1.81072 1.19663 0.93542 1.02378 0.94282 1.20776 1.01853 0.98734 0.90620 1.17070 0.86907 1.02330 0.86093 1.91484 1.70510 1.87557 1.61702 1.18150 0.91709 1.01606 0.95224 1.20959 0.96113 1.00006 0.95461 1.20892 0.93329 0.98901 0.99491 1.20926 1.00194 0.99047 0.93159 1.21133 0.93599 0.98774 0.97691 1.17909 0.93673 0.99475 0.92850 1.23169 0.95773 0.95820 0.97405 0.93493 0.93352 0.92354 0.91492 0.89538 0.89932 0.91797 0.83464 0.85176 0.85614 0.85457 0.84581 0.80800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.09 10.56 55.49 0.59 -25.50 16 2 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 3 Si 0.91 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.24 -5.98 10.37 -15.06 -0.16 -6.14 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -13.56 3.02 -156.36 -0.47 -14.03 16 10 C 0.17 3.99 4.76 -1.68 -0.01 3.98 16 11 C 0.10 1.84 5.26 -62.41 -0.33 1.52 16 12 H 0.12 2.11 8.07 -51.93 -0.42 1.69 16 13 C -0.15 -2.41 6.81 -22.32 -0.15 -2.56 16 14 C 0.14 2.39 5.53 -62.57 -0.35 2.04 16 15 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 16 C 0.07 1.07 4.22 -1.67 -0.01 1.06 16 17 N -0.60 -10.66 2.96 -160.20 -0.47 -11.14 16 18 C 0.57 10.64 7.85 -12.36 -0.10 10.54 16 19 O -0.55 -11.69 16.70 5.31 0.09 -11.60 16 20 C -0.10 -1.53 5.87 -105.01 -0.62 -2.14 16 21 C -0.10 -1.53 9.46 -39.50 -0.37 -1.90 16 22 C 0.10 1.33 7.23 -39.39 -0.28 1.05 16 23 F -0.13 -1.81 16.61 2.25 0.04 -1.77 16 24 C -0.07 -0.86 5.75 -106.71 -0.61 -1.47 16 25 C -0.11 -1.15 9.59 -39.50 -0.38 -1.53 16 26 C -0.11 -0.97 9.95 -39.91 -0.40 -1.36 16 27 C -0.12 -1.02 9.95 -39.93 -0.40 -1.41 16 28 C -0.09 -0.96 9.77 -39.44 -0.39 -1.35 16 29 C -0.04 -0.49 5.74 -106.85 -0.61 -1.11 16 30 C -0.10 -1.43 8.52 -38.72 -0.33 -1.76 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.05 1.30 7.68 -51.93 -0.40 0.90 16 33 H 0.06 1.49 7.46 -51.93 -0.39 1.10 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.08 1.39 6.86 -51.93 -0.36 1.04 16 37 H 0.06 0.78 6.88 -51.93 -0.36 0.42 16 38 H 0.15 2.24 7.62 -52.49 -0.40 1.84 16 39 H 0.13 1.21 7.70 -52.49 -0.40 0.81 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 43 H 0.18 2.20 2.73 -55.81 -0.15 2.05 16 LS Contribution 352.57 15.07 5.31 5.31 Total: -1.00 -31.30 352.57 -10.48 -41.78 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -4.96 Total: 3.58 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -5.58 Total: -2.74 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.36 Total: -50.67 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.30 -10.48 -41.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032435890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.325 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds