Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99886 * 2 1 4 4 H 1.48498 * 109.47101 * 270.00300 * 3 2 1 5 5 H 1.48504 * 109.46834 * 30.00465 * 3 2 1 6 6 H 1.48500 * 109.46925 * 150.00179 * 3 2 1 7 7 C 1.38810 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99638 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00115 * 359.97438 * 7 2 1 10 10 C 1.47861 * 126.94414 * 359.97438 * 9 7 2 11 11 C 1.56027 * 105.10313 * 182.02336 * 10 9 7 12 12 H 1.08992 * 116.24705 * 158.83637 * 11 10 9 13 13 C 1.57085 * 99.60521 * 32.80309 * 11 10 9 14 14 C 1.49290 * 126.94104 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.78877 * 16.28648 * 14 9 7 16 16 C 1.56018 * 104.09259 * 246.67718 * 14 9 7 17 17 N 1.47877 * 105.19123 * 288.71888 * 16 14 9 18 18 C 1.34774 * 126.94395 * 182.02051 * 17 16 14 19 19 O 1.21558 * 119.99661 * 174.10199 * 18 17 16 20 20 C 1.47785 * 119.99895 * 354.09737 * 18 17 16 21 21 C 1.40618 * 119.73020 * 185.62202 * 20 18 17 22 22 C 1.35973 * 120.81383 * 179.68032 * 21 20 18 23 23 F 1.35092 * 120.01650 * 180.27903 * 22 21 20 24 24 C 1.40893 * 119.96637 * 0.61716 * 22 21 20 25 25 C 1.40443 * 121.04624 * 179.64314 * 24 22 21 26 26 C 1.36148 * 119.73002 * 180.02562 * 25 24 22 27 27 C 1.39364 * 120.99931 * 359.95526 * 26 25 24 28 28 C 1.36091 * 120.94874 * 0.04509 * 27 26 25 29 29 C 1.40660 * 119.66377 * 359.97438 * 28 27 26 30 30 C 1.38476 * 119.73591 * 5.89656 * 20 18 17 31 31 H 0.96999 * 119.99729 * 359.97438 * 1 2 3 32 32 H 1.08997 * 110.32037 * 63.11941 * 10 9 7 33 33 H 1.09003 * 110.40281 * 300.96826 * 10 9 7 34 34 H 1.09000 * 112.36413 * 191.71391 * 13 11 10 35 35 H 1.09000 * 112.44577 * 64.30277 * 13 11 10 36 36 H 1.08995 * 110.31720 * 47.67566 * 16 14 9 37 37 H 1.08999 * 110.31651 * 169.76085 * 16 14 9 38 38 H 1.07992 * 119.59768 * 0.02562 * 21 20 18 39 39 H 1.07999 * 120.13368 * 0.02562 * 25 24 22 40 40 H 1.07992 * 119.50497 * 179.97438 * 26 25 24 41 41 H 1.07991 * 119.52802 * 180.02562 * 27 26 25 42 42 H 1.08005 * 120.16913 * 180.02562 * 28 27 26 43 43 H 1.07998 * 120.25003 * 359.97249 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1422 -2.5668 0.0005 11 6 -0.3637 -4.1104 0.0532 12 1 -1.3358 -4.4458 0.4145 13 6 0.8848 -4.5252 0.9115 14 6 1.9103 -3.7617 -0.0005 15 1 2.9620 -3.8479 0.2723 16 6 1.5078 -4.3459 -1.3901 17 7 0.0512 -4.5857 -1.3025 18 6 -0.7399 -5.1224 -2.2525 19 8 -1.9063 -5.3619 -2.0079 20 6 -0.1894 -5.4196 -3.5914 21 6 -1.0449 -5.8678 -4.6134 22 6 -0.5630 -6.1416 -5.8550 23 9 -1.4004 -6.5659 -6.8265 24 6 0.8112 -5.9892 -6.1260 25 6 1.3344 -6.2726 -7.3981 26 6 2.6668 -6.1165 -7.6303 27 6 3.5243 -5.6775 -6.6232 28 6 3.0539 -5.3932 -5.3782 29 6 1.6831 -5.5430 -5.1009 30 6 1.1657 -5.2599 -3.8278 31 1 -0.4850 0.8401 0.0004 32 1 -0.5745 -2.1534 -0.9107 33 1 -0.5823 -2.0913 0.8771 34 1 1.0498 -5.6026 0.9097 35 1 0.8477 -4.1202 1.9228 36 1 1.7262 -3.6276 -2.1803 37 1 2.0351 -5.2819 -1.5742 38 1 -2.0986 -5.9910 -4.4112 39 1 0.6824 -6.6130 -8.1890 40 1 3.0653 -6.3359 -8.6097 41 1 4.5771 -5.5617 -6.8336 42 1 3.7297 -5.0534 -4.6072 43 1 1.8192 -4.9192 -3.0384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032435890.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = 32.650622 kcal Electronic energy + Delta-G solvation = -29337.837241 eV Core-core repulsion = 25264.306339 eV Total energy + Delta-G solvation = -4073.530901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.133 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.10457 -42.06357 -40.98016 -39.47061 -37.19919 -35.57225 -33.90670 -33.07640 -31.68070 -31.09315 -30.31934 -29.71123 -27.12141 -26.15101 -24.66294 -24.52832 -23.02376 -22.31005 -21.44321 -20.50463 -19.56853 -18.74902 -18.49860 -18.00941 -17.41437 -17.05653 -16.89420 -16.48757 -16.38014 -16.27874 -15.76421 -15.40036 -15.14125 -15.02868 -14.85329 -14.48865 -14.26594 -14.15566 -13.65464 -13.57486 -13.46591 -13.15445 -13.04353 -12.80283 -12.69702 -12.31919 -12.28469 -12.26363 -12.12564 -12.10157 -11.96796 -11.63073 -11.51136 -11.14285 -10.92861 -10.69171 -9.89107 -9.58795 -8.94542 -8.89320 -7.82802 -5.18494 -0.79748 -0.38507 0.82180 1.30403 1.49310 1.50106 1.58857 1.78458 2.23137 2.50287 2.93446 2.97925 3.24701 3.34656 3.41307 3.48919 3.71710 3.76148 3.84197 3.87205 3.98713 4.02137 4.19530 4.21698 4.31650 4.37030 4.45419 4.53968 4.60097 4.67231 4.76919 4.81967 4.86527 4.99912 5.04690 5.08554 5.11157 5.14697 5.23091 5.43035 5.46981 5.49051 5.52239 5.62008 5.67415 5.90811 6.10752 6.52146 7.00374 7.04086 7.73017 8.42754 9.28588 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.003548 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.361766 B = 7890.258076 C = 8893.669852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.071 4.071 3 Si 0.974 3.026 4 H -0.292 1.292 5 H -0.305 1.305 6 H -0.259 1.259 7 C -0.227 4.227 8 H 0.101 0.899 9 N -0.614 5.614 10 C 0.187 3.813 11 C 0.099 3.901 12 H 0.114 0.886 13 C -0.130 4.130 14 C 0.138 3.862 15 H 0.146 0.854 16 C 0.073 3.927 17 N -0.600 5.600 18 C 0.565 3.435 19 O -0.589 6.589 20 C -0.124 4.124 21 C -0.119 4.119 22 C 0.092 3.908 23 F -0.135 7.135 24 C -0.077 4.077 25 C -0.126 4.126 26 C -0.092 4.092 27 C -0.107 4.107 28 C -0.098 4.098 29 C -0.055 4.055 30 C -0.086 4.086 31 H 0.242 0.758 32 H -0.004 1.004 33 H 0.020 0.980 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.139 0.861 40 H 0.160 0.840 41 H 0.164 0.836 42 H 0.161 0.839 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.398 -15.645 -11.475 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.264 4.264 3 Si 0.804 3.196 4 H -0.219 1.219 5 H -0.232 1.232 6 H -0.184 1.184 7 C -0.355 4.355 8 H 0.119 0.881 9 N -0.339 5.339 10 C 0.061 3.939 11 C -0.003 4.003 12 H 0.132 0.868 13 C -0.169 4.169 14 C 0.032 3.968 15 H 0.164 0.836 16 C -0.050 4.050 17 N -0.331 5.331 18 C 0.356 3.644 19 O -0.472 6.472 20 C -0.127 4.127 21 C -0.139 4.139 22 C 0.073 3.927 23 F -0.114 7.114 24 C -0.078 4.078 25 C -0.144 4.144 26 C -0.110 4.110 27 C -0.125 4.125 28 C -0.116 4.116 29 C -0.055 4.055 30 C -0.103 4.103 31 H 0.051 0.949 32 H 0.014 0.986 33 H 0.038 0.962 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.157 0.843 40 H 0.177 0.823 41 H 0.181 0.819 42 H 0.179 0.821 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 10.696 -15.553 -11.433 22.068 hybrid contribution -1.238 1.407 -0.189 1.884 sum 9.458 -14.146 -11.622 20.607 Atomic orbital electron populations 1.70162 1.06700 1.25047 1.58900 1.25644 0.96287 1.01179 1.03243 0.85128 0.77950 0.79426 0.77138 1.21908 1.23249 1.18352 1.19571 0.91413 0.82890 1.41653 0.88110 1.45479 1.01236 1.01165 1.85978 1.21517 0.85270 0.89868 0.97278 1.24281 0.99845 0.94320 0.81891 0.86807 1.24094 0.93550 1.01041 0.98247 1.23670 0.98688 0.83023 0.91459 0.83625 1.23774 0.79252 1.00859 1.01162 1.49150 1.10314 1.58713 1.14918 1.18164 0.84876 0.77147 0.84199 1.90702 1.18372 1.56269 1.81867 1.19436 0.94799 1.05513 0.92969 1.20676 1.01308 1.00408 0.91523 1.17144 0.87711 1.02333 0.85561 1.91470 1.70755 1.87582 1.61559 1.18390 0.91041 1.01757 0.96609 1.21175 0.97478 1.01009 0.94762 1.21373 0.92374 0.96157 1.01057 1.21412 1.01968 0.96868 0.92229 1.21474 0.92443 0.98461 0.99236 1.18134 0.95099 1.00059 0.92194 1.23272 0.94616 0.94115 0.98345 0.94865 0.98628 0.96157 0.87764 0.89761 0.91125 0.86787 0.84968 0.84282 0.82250 0.81874 0.82095 0.79571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.62 10.56 21.65 0.23 -57.39 16 2 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 3 Si 0.97 44.05 29.55 68.60 2.03 46.08 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.31 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.23 -11.40 10.37 84.03 0.87 -10.53 16 8 H 0.10 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.61 -27.85 3.02 -648.61 -1.96 -29.81 16 10 C 0.19 9.09 4.76 87.17 0.42 9.51 16 11 C 0.10 3.77 5.26 46.89 0.25 4.01 16 12 H 0.11 4.34 8.07 -2.39 -0.02 4.32 16 13 C -0.13 -3.80 6.81 33.45 0.23 -3.57 16 14 C 0.14 4.28 5.53 46.92 0.26 4.54 16 15 H 0.15 3.52 8.14 -2.39 -0.02 3.50 16 16 C 0.07 2.07 4.22 87.16 0.37 2.44 16 17 N -0.60 -21.40 2.96 -779.02 -2.31 -23.70 16 18 C 0.57 21.87 7.85 86.77 0.68 22.55 16 19 O -0.59 -26.80 16.70 -3.90 -0.07 -26.87 16 20 C -0.12 -4.06 5.87 -20.11 -0.12 -4.18 16 21 C -0.12 -3.86 9.46 22.32 0.21 -3.64 16 22 C 0.09 2.62 7.23 22.39 0.16 2.78 16 23 F -0.14 -3.74 16.61 44.97 0.75 -3.00 16 24 C -0.08 -1.91 5.75 -21.22 -0.12 -2.03 16 25 C -0.13 -2.38 9.59 22.32 0.21 -2.16 16 26 C -0.09 -1.21 9.95 22.05 0.22 -0.99 16 27 C -0.11 -1.31 9.95 22.04 0.22 -1.09 16 28 C -0.10 -1.57 9.77 22.36 0.22 -1.35 16 29 C -0.05 -1.26 5.74 -21.31 -0.12 -1.38 16 30 C -0.09 -2.23 8.52 22.83 0.19 -2.04 16 31 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.00 -0.26 7.68 -2.39 -0.02 -0.28 16 33 H 0.02 1.12 7.46 -2.39 -0.02 1.10 16 34 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.07 2.24 6.86 -2.39 -0.02 2.22 16 37 H 0.11 2.20 6.88 -2.39 -0.02 2.19 16 38 H 0.13 4.49 7.62 -2.91 -0.02 4.46 16 39 H 0.14 2.29 7.70 -2.91 -0.02 2.27 16 40 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 42 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 43 H 0.19 4.17 2.73 -6.03 -0.02 4.15 16 Total: -1.00 -75.03 352.57 4.34 -70.70 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 1.05 Total: 14.55 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 4.61 Total: 9.44 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -4.04 Total: -110.90 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.07 Total: -26.87 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.75 Total: -3.00 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -75.03 4.34 -70.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032435890.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.347 kcal (2) G-P(sol) polarization free energy of solvation -75.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds