Wall clock time and date at job start Sat Apr 11 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99502 * 2 1 4 4 H 1.48505 * 109.47237 * 270.00137 * 3 2 1 5 5 H 1.48491 * 109.47219 * 30.00446 * 3 2 1 6 6 H 1.48502 * 109.46858 * 150.00480 * 3 2 1 7 7 C 1.38810 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99483 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00451 * 359.97438 * 7 2 1 10 10 C 1.47871 * 126.94525 * 0.02562 * 9 7 2 11 11 C 1.55480 * 105.17133 * 181.92027 * 10 9 7 12 12 H 1.08997 * 116.03481 * 159.74946 * 11 10 9 13 13 C 1.57431 * 99.68607 * 32.85970 * 11 10 9 14 14 C 1.49295 * 126.94428 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.15232 * 15.84799 * 14 9 7 16 16 C 1.56017 * 104.09207 * 246.70051 * 14 9 7 17 17 N 1.47870 * 105.10611 * 288.76948 * 16 14 9 18 18 C 1.34771 * 126.94750 * 181.98134 * 17 16 14 19 19 O 1.21521 * 120.00271 * 180.02562 * 18 17 16 20 20 C 1.48161 * 119.99906 * 0.02562 * 18 17 16 21 21 C 1.39240 * 119.68679 * 180.02562 * 20 18 17 22 22 C 1.38712 * 119.19113 * 179.97438 * 21 20 18 23 23 C 1.38418 * 118.54735 * 359.72262 * 22 21 20 24 24 C 1.39257 * 119.30473 * 0.54134 * 23 22 21 25 25 N 1.39847 * 119.61788 * 179.73084 * 24 23 22 26 26 C 1.34813 * 126.84657 * 179.72664 * 25 24 23 27 27 N 1.30804 * 108.02104 * 179.97438 * 26 25 24 28 28 C 1.33294 * 109.84816 * 0.02562 * 27 26 25 29 29 N 1.30709 * 109.01651 * 359.97438 * 28 27 26 30 30 N 1.31976 * 120.75936 * 359.44526 * 24 23 22 31 31 H 0.96996 * 120.00716 * 359.97438 * 1 2 3 32 32 H 1.09002 * 110.30956 * 300.90924 * 10 9 7 33 33 H 1.09000 * 110.31518 * 62.98403 * 10 9 7 34 34 H 1.08999 * 112.53277 * 191.70911 * 13 11 10 35 35 H 1.08992 * 112.32310 * 64.16898 * 13 11 10 36 36 H 1.08999 * 110.31600 * 169.86284 * 16 14 9 37 37 H 1.09003 * 110.40027 * 47.71652 * 16 14 9 38 38 H 1.08000 * 120.41064 * 359.97438 * 21 20 18 39 39 H 1.07996 * 120.72937 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.34647 * 180.26331 * 23 22 21 41 41 H 1.08001 * 125.98377 * 359.97438 * 26 25 24 42 42 H 1.07995 * 125.49343 * 179.73461 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1422 -2.5670 -0.0005 11 6 -0.3647 -4.1049 0.0497 12 1 -1.3439 -4.4356 0.3960 13 6 0.8841 -4.5252 0.9113 14 6 1.9104 -3.7617 -0.0005 15 1 2.9645 -3.8351 0.2666 16 6 1.5085 -4.3457 -1.3904 17 7 0.0517 -4.5836 -1.3017 18 6 -0.7409 -5.1189 -2.2512 19 8 -1.9301 -5.2573 -2.0429 20 6 -0.1624 -5.5387 -3.5489 21 6 -0.9874 -6.0906 -4.5255 22 6 -0.4351 -6.4796 -5.7369 23 6 0.9231 -6.2982 -5.9333 24 6 1.6915 -5.7452 -4.9122 25 7 3.0653 -5.5642 -5.1015 26 6 3.9409 -5.0414 -4.2198 27 7 5.1253 -5.0454 -4.7749 28 6 5.0480 -5.5588 -6.0026 29 7 3.8079 -5.8912 -6.2479 30 7 1.1374 -5.3846 -3.7699 31 1 -0.4851 0.8399 0.0004 32 1 -0.5813 -2.0915 0.8765 33 1 -0.5741 -2.1518 -0.9112 34 1 1.0493 -5.6026 0.9096 35 1 0.8454 -4.1192 1.9220 36 1 2.0344 -5.2826 -1.5736 37 1 1.7273 -3.6285 -2.1815 38 1 -2.0445 -6.2143 -4.3420 39 1 -1.0520 -6.9100 -6.5119 40 1 1.3827 -6.5868 -6.8671 41 1 3.7056 -4.6823 -3.2288 42 1 5.8757 -5.6772 -6.6860 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032707192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:06 Heat of formation + Delta-G solvation = 181.982098 kcal Electronic energy + Delta-G solvation = -29698.475293 eV Core-core repulsion = 25683.632603 eV Total energy + Delta-G solvation = -4014.842690 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54740 -40.83246 -39.72200 -37.82916 -34.47191 -33.85205 -33.03404 -31.63215 -31.29699 -30.27850 -29.04629 -28.58591 -25.52027 -25.05509 -24.76592 -23.36042 -22.25143 -21.90297 -20.78438 -19.91264 -19.11317 -18.29610 -17.75285 -16.59157 -16.36424 -16.27976 -15.96520 -15.62084 -15.45534 -15.18226 -14.70821 -14.33019 -14.03447 -13.93683 -13.71526 -13.37288 -13.12238 -12.65651 -12.42644 -12.18951 -11.95826 -11.67885 -11.35515 -11.20723 -11.05403 -10.91170 -10.83990 -10.63424 -10.51679 -10.34756 -10.27606 -10.17802 -10.11100 -10.06412 -9.68420 -9.59339 -8.94457 -8.71680 -8.08972 -6.93906 -5.78336 -3.12507 0.21612 0.57964 1.60859 1.66405 2.66777 2.83268 3.09784 3.37143 3.42389 3.44346 3.69873 3.82121 4.12564 4.12946 4.41234 4.52201 4.62274 4.66063 4.87364 4.99122 5.11101 5.14154 5.21536 5.31060 5.52640 5.55760 5.61615 5.72973 5.75724 5.86266 5.98774 6.01032 6.13044 6.17219 6.26960 6.38156 6.46338 6.57203 6.60332 6.70090 7.20079 7.39523 7.43785 7.69308 7.79431 7.91570 8.08138 8.34100 9.08682 9.69865 10.38130 11.33985 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.004277 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.612039 B = 6545.345175 C = 8166.916868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.174 3.826 11 C 0.097 3.903 12 H 0.116 0.884 13 C -0.150 4.150 14 C 0.134 3.866 15 H 0.108 0.892 16 C 0.100 3.900 17 N -0.581 5.581 18 C 0.578 3.422 19 O -0.544 6.544 20 C 0.129 3.871 21 C -0.119 4.119 22 C -0.060 4.060 23 C -0.141 4.141 24 C 0.357 3.643 25 N -0.333 5.333 26 C 0.298 3.702 27 N -0.539 5.539 28 C 0.213 3.787 29 N -0.315 5.315 30 N -0.466 5.466 31 H 0.254 0.746 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.158 0.842 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.229 0.771 42 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 -15.350 -9.765 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.049 3.951 11 C -0.005 4.005 12 H 0.134 0.866 13 C -0.189 4.189 14 C 0.025 3.975 15 H 0.126 0.874 16 C -0.025 4.025 17 N -0.311 5.311 18 C 0.364 3.636 19 O -0.422 6.422 20 C -0.011 4.011 21 C -0.141 4.141 22 C -0.086 4.086 23 C -0.164 4.164 24 C 0.127 3.873 25 N -0.118 5.118 26 C 0.003 3.997 27 N -0.264 5.264 28 C -0.089 4.089 29 N -0.140 5.140 30 N -0.182 5.182 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.169 0.831 41 H 0.245 0.755 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.019 -14.972 -9.547 18.011 hybrid contribution -0.098 0.761 -0.702 1.041 sum 2.921 -14.210 -10.249 17.762 Atomic orbital electron populations 1.69902 1.04950 1.25311 1.56534 1.24800 0.95662 0.97692 1.02039 0.86134 0.78634 0.83504 0.77562 1.21681 1.21696 1.20553 1.19047 0.90429 0.82020 1.44306 0.90073 1.45237 1.01216 0.99337 1.86307 1.21829 0.84934 0.86898 1.01479 1.24448 0.98061 0.97885 0.80103 0.86572 1.24205 0.96478 0.98990 0.99255 1.23318 0.96645 0.86282 0.91225 0.87424 1.23375 0.78977 0.99219 1.00915 1.49068 1.10122 1.57002 1.14923 1.17283 0.85386 0.78790 0.82104 1.90776 1.14306 1.57615 1.79511 1.21037 0.87184 0.97078 0.95777 1.22218 1.02510 0.96726 0.92634 1.21561 0.93936 0.96054 0.97033 1.21831 0.94344 1.00284 0.99892 1.17630 0.81247 0.97079 0.91317 1.47507 1.05768 1.46208 1.12349 1.26579 0.83691 0.91737 0.97736 1.70762 1.22789 1.24087 1.08805 1.26266 0.94362 0.94672 0.93626 1.78107 1.05433 1.25904 1.04599 1.67004 1.13574 1.17332 1.20271 0.93604 0.92360 0.93476 0.91555 0.89602 0.92378 0.90644 0.82481 0.82937 0.83066 0.75499 0.75825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.47 10.56 55.49 0.59 -25.88 16 2 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.23 -6.00 10.37 -15.06 -0.16 -6.15 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -13.91 3.02 -156.68 -0.47 -14.39 16 10 C 0.17 4.04 4.75 -1.97 -0.01 4.03 16 11 C 0.10 1.80 5.23 -62.65 -0.33 1.48 16 12 H 0.12 2.06 8.05 -51.93 -0.42 1.65 16 13 C -0.15 -2.42 6.83 -22.10 -0.15 -2.57 16 14 C 0.13 2.39 5.53 -62.55 -0.35 2.04 16 15 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 16 C 0.10 1.67 4.73 -1.68 -0.01 1.67 16 17 N -0.58 -10.45 2.95 -157.86 -0.47 -10.92 16 18 C 0.58 10.30 7.89 -12.19 -0.10 10.21 16 19 O -0.54 -10.74 16.66 5.35 0.09 -10.66 16 20 C 0.13 1.91 6.73 -83.03 -0.56 1.35 16 21 C -0.12 -1.38 9.63 -39.03 -0.38 -1.76 16 22 C -0.06 -0.53 10.16 -39.34 -0.40 -0.93 16 23 C -0.14 -1.47 9.72 -39.14 -0.38 -1.85 16 24 C 0.36 4.62 7.56 -154.50 -1.17 3.45 16 25 N -0.33 -4.33 3.81 -13.33 -0.05 -4.38 16 26 C 0.30 3.83 12.26 -90.33 -1.11 2.72 16 27 N -0.54 -6.94 11.19 -15.74 -0.18 -7.12 16 28 C 0.21 2.30 13.03 -91.77 -1.20 1.10 16 29 N -0.31 -3.82 12.02 29.30 0.35 -3.47 16 30 N -0.47 -6.65 6.62 -8.84 -0.06 -6.70 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.06 1.50 7.46 -51.93 -0.39 1.11 16 33 H 0.05 1.28 7.67 -51.93 -0.40 0.88 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.06 0.84 7.49 -51.93 -0.39 0.45 16 37 H 0.08 1.42 7.70 -51.93 -0.40 1.02 16 38 H 0.16 1.67 7.63 -52.49 -0.40 1.27 16 39 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.15 1.36 7.72 -52.48 -0.41 0.96 16 41 H 0.23 2.62 7.99 -52.49 -0.42 2.20 16 42 H 0.23 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -32.99 355.99 -11.11 -44.10 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.88 Total: 2.93 kcal Atomic # 6 Polarization: 20.91 SS G_CDS: -6.37 Total: 14.53 kcal Atomic # 7 Polarization: -72.58 SS G_CDS: -0.29 Total: -72.86 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.99 -11.11 -44.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032707192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.077 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds