Wall clock time and date at job start Sat Apr 11 2020 05:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99502 * 2 1 4 4 H 1.48505 * 109.47237 * 270.00137 * 3 2 1 5 5 H 1.48491 * 109.47219 * 30.00446 * 3 2 1 6 6 H 1.48502 * 109.46858 * 150.00480 * 3 2 1 7 7 C 1.38810 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99483 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00451 * 359.97438 * 7 2 1 10 10 C 1.47871 * 126.94525 * 0.02562 * 9 7 2 11 11 C 1.55480 * 105.17133 * 181.92027 * 10 9 7 12 12 H 1.08997 * 116.03481 * 159.74946 * 11 10 9 13 13 C 1.57431 * 99.68607 * 32.85970 * 11 10 9 14 14 C 1.49295 * 126.94428 * 180.02562 * 9 7 2 15 15 H 1.08997 * 116.15232 * 15.84799 * 14 9 7 16 16 C 1.56017 * 104.09207 * 246.70051 * 14 9 7 17 17 N 1.47870 * 105.10611 * 288.76948 * 16 14 9 18 18 C 1.34771 * 126.94750 * 181.98134 * 17 16 14 19 19 O 1.21521 * 120.00271 * 180.02562 * 18 17 16 20 20 C 1.48161 * 119.99906 * 0.02562 * 18 17 16 21 21 C 1.39240 * 119.68679 * 180.02562 * 20 18 17 22 22 C 1.38712 * 119.19113 * 179.97438 * 21 20 18 23 23 C 1.38418 * 118.54735 * 359.72262 * 22 21 20 24 24 C 1.39257 * 119.30473 * 0.54134 * 23 22 21 25 25 N 1.39847 * 119.61788 * 179.73084 * 24 23 22 26 26 C 1.34813 * 126.84657 * 179.72664 * 25 24 23 27 27 N 1.30804 * 108.02104 * 179.97438 * 26 25 24 28 28 C 1.33294 * 109.84816 * 0.02562 * 27 26 25 29 29 N 1.30709 * 109.01651 * 359.97438 * 28 27 26 30 30 N 1.31976 * 120.75936 * 359.44526 * 24 23 22 31 31 H 0.96996 * 120.00716 * 359.97438 * 1 2 3 32 32 H 1.09002 * 110.30956 * 300.90924 * 10 9 7 33 33 H 1.09000 * 110.31518 * 62.98403 * 10 9 7 34 34 H 1.08999 * 112.53277 * 191.70911 * 13 11 10 35 35 H 1.08992 * 112.32310 * 64.16898 * 13 11 10 36 36 H 1.08999 * 110.31600 * 169.86284 * 16 14 9 37 37 H 1.09003 * 110.40027 * 47.71652 * 16 14 9 38 38 H 1.08000 * 120.41064 * 359.97438 * 21 20 18 39 39 H 1.07996 * 120.72937 * 180.02562 * 22 21 20 40 40 H 1.08005 * 120.34647 * 180.26331 * 23 22 21 41 41 H 1.08001 * 125.98377 * 359.97438 * 26 25 24 42 42 H 1.07995 * 125.49343 * 179.73461 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1422 -2.5670 -0.0005 11 6 -0.3647 -4.1049 0.0497 12 1 -1.3439 -4.4356 0.3960 13 6 0.8841 -4.5252 0.9113 14 6 1.9104 -3.7617 -0.0005 15 1 2.9645 -3.8351 0.2666 16 6 1.5085 -4.3457 -1.3904 17 7 0.0517 -4.5836 -1.3017 18 6 -0.7409 -5.1189 -2.2512 19 8 -1.9301 -5.2573 -2.0429 20 6 -0.1624 -5.5387 -3.5489 21 6 -0.9874 -6.0906 -4.5255 22 6 -0.4351 -6.4796 -5.7369 23 6 0.9231 -6.2982 -5.9333 24 6 1.6915 -5.7452 -4.9122 25 7 3.0653 -5.5642 -5.1015 26 6 3.9409 -5.0414 -4.2198 27 7 5.1253 -5.0454 -4.7749 28 6 5.0480 -5.5588 -6.0026 29 7 3.8079 -5.8912 -6.2479 30 7 1.1374 -5.3846 -3.7699 31 1 -0.4851 0.8399 0.0004 32 1 -0.5813 -2.0915 0.8765 33 1 -0.5741 -2.1518 -0.9112 34 1 1.0493 -5.6026 0.9096 35 1 0.8454 -4.1192 1.9220 36 1 2.0344 -5.2826 -1.5736 37 1 1.7273 -3.6285 -2.1815 38 1 -2.0445 -6.2143 -4.3420 39 1 -1.0520 -6.9100 -6.5119 40 1 1.3827 -6.5868 -6.8671 41 1 3.7056 -4.6823 -3.2288 42 1 5.8757 -5.6772 -6.6860 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032707192.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:06 Heat of formation + Delta-G solvation = 164.179382 kcal Electronic energy + Delta-G solvation = -29699.247277 eV Core-core repulsion = 25683.632603 eV Total energy + Delta-G solvation = -4015.614674 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.44577 -42.00300 -41.01160 -39.25564 -35.53300 -35.39772 -34.19510 -33.07290 -32.36635 -31.29915 -30.60264 -30.25939 -26.99639 -26.49136 -25.67773 -24.87245 -23.32259 -22.82112 -22.05209 -21.43039 -20.47931 -19.45959 -19.15662 -18.19283 -17.47688 -17.24470 -17.18934 -16.76252 -16.70673 -16.39787 -16.15810 -15.74247 -15.18189 -15.13595 -15.00507 -14.55122 -14.49019 -13.88610 -13.62949 -13.42479 -13.32017 -13.29715 -13.09375 -12.85085 -12.71090 -12.34735 -12.16674 -12.12264 -12.04698 -11.93213 -11.59091 -11.52853 -11.27079 -11.15503 -11.01890 -10.90064 -10.62058 -9.92129 -9.55695 -8.88557 -7.83901 -5.18535 -0.71613 -0.34418 0.71805 0.76517 1.46768 1.47306 1.56021 1.60049 1.80037 1.83156 2.48730 2.63627 2.78234 3.25546 3.29102 3.34614 3.41665 3.55950 3.75886 3.78642 3.81963 3.91602 4.02987 4.05923 4.19030 4.21795 4.30409 4.60088 4.69383 4.76366 4.85822 4.93107 4.97576 5.01449 5.03668 5.13978 5.18361 5.27146 5.33412 5.46043 5.51245 5.66219 5.70779 6.11020 6.23350 6.52495 6.88243 6.98106 7.04453 7.72126 8.42259 9.27438 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010060 B = 0.004277 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.612039 B = 6545.345175 C = 8166.916868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.069 4.069 3 Si 0.972 3.028 4 H -0.294 1.294 5 H -0.300 1.300 6 H -0.262 1.262 7 C -0.226 4.226 8 H 0.095 0.905 9 N -0.615 5.615 10 C 0.188 3.812 11 C 0.101 3.899 12 H 0.122 0.878 13 C -0.127 4.127 14 C 0.128 3.872 15 H 0.136 0.864 16 C 0.117 3.883 17 N -0.589 5.589 18 C 0.573 3.427 19 O -0.572 6.572 20 C 0.100 3.900 21 C -0.114 4.114 22 C -0.037 4.037 23 C -0.130 4.130 24 C 0.340 3.660 25 N -0.340 5.340 26 C 0.288 3.712 27 N -0.557 5.557 28 C 0.217 3.783 29 N -0.325 5.325 30 N -0.481 5.481 31 H 0.243 0.757 32 H 0.023 0.977 33 H -0.005 1.005 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.165 0.835 39 H 0.200 0.800 40 H 0.170 0.830 41 H 0.232 0.768 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.933 -17.833 -11.408 21.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.222 1.222 5 H -0.227 1.227 6 H -0.186 1.186 7 C -0.355 4.355 8 H 0.113 0.887 9 N -0.340 5.340 10 C 0.062 3.938 11 C -0.001 4.001 12 H 0.140 0.860 13 C -0.166 4.166 14 C 0.022 3.978 15 H 0.153 0.847 16 C -0.007 4.007 17 N -0.319 5.319 18 C 0.361 3.639 19 O -0.452 6.452 20 C -0.039 4.039 21 C -0.136 4.136 22 C -0.063 4.063 23 C -0.152 4.152 24 C 0.110 3.890 25 N -0.125 5.125 26 C -0.008 4.008 27 N -0.283 5.283 28 C -0.085 4.085 29 N -0.151 5.151 30 N -0.197 5.197 31 H 0.052 0.948 32 H 0.041 0.959 33 H 0.013 0.987 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.183 0.817 39 H 0.217 0.783 40 H 0.188 0.812 41 H 0.248 0.752 42 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 4.819 -17.504 -11.190 21.327 hybrid contribution -0.607 1.459 -0.307 1.610 sum 4.213 -16.045 -11.497 20.184 Atomic orbital electron populations 1.70140 1.06491 1.25033 1.58969 1.25589 0.96349 1.00945 1.03311 0.85156 0.78004 0.79642 0.77042 1.22186 1.22747 1.18596 1.19517 0.91240 0.83100 1.41610 0.88739 1.45478 1.01435 1.00993 1.86062 1.21420 0.85040 0.90056 0.97332 1.24284 0.99780 0.94312 0.81768 0.86003 1.24103 0.93516 1.00765 0.98193 1.23737 0.98360 0.83382 0.92338 0.84680 1.23134 0.78579 0.99868 0.99143 1.49137 1.10669 1.57267 1.14827 1.17817 0.85095 0.77998 0.82950 1.90741 1.15435 1.58765 1.80286 1.20674 0.88076 0.99894 0.95244 1.22416 1.02606 0.95705 0.92852 1.22027 0.93588 0.94040 0.96621 1.22159 0.94764 0.98634 0.99679 1.17893 0.81524 0.97928 0.91701 1.47595 1.05880 1.46383 1.12628 1.26726 0.84000 0.91941 0.98117 1.70786 1.22919 1.24766 1.09876 1.27081 0.94949 0.93148 0.93354 1.78076 1.05920 1.26606 1.04512 1.66766 1.13500 1.17938 1.21516 0.94779 0.95911 0.98672 0.87983 0.89660 0.89311 0.93105 0.81748 0.78253 0.81219 0.75167 0.72021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.16 10.56 21.65 0.23 -57.93 16 2 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 3 Si 0.97 45.56 29.55 68.60 2.03 47.58 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.23 -11.92 10.37 84.03 0.87 -11.05 16 8 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 9 N -0.62 -29.24 3.02 -649.61 -1.96 -31.20 16 10 C 0.19 9.23 4.75 86.97 0.41 9.64 16 11 C 0.10 3.82 5.23 46.87 0.24 4.07 16 12 H 0.12 4.44 8.05 -2.39 -0.02 4.42 16 13 C -0.13 -3.88 6.83 33.59 0.23 -3.65 16 14 C 0.13 4.41 5.53 46.93 0.26 4.67 16 15 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 16 C 0.12 3.83 4.73 87.16 0.41 4.24 16 17 N -0.59 -21.32 2.95 -771.65 -2.28 -23.60 16 18 C 0.57 20.62 7.89 86.88 0.69 21.31 16 19 O -0.57 -23.03 16.66 -3.78 -0.06 -23.09 16 20 C 0.10 2.88 6.73 41.89 0.28 3.16 16 21 C -0.11 -2.42 9.63 22.62 0.22 -2.20 16 22 C -0.04 -0.52 10.16 22.43 0.23 -0.30 16 23 C -0.13 -2.30 9.72 22.56 0.22 -2.08 16 24 C 0.34 8.21 7.56 132.93 1.01 9.21 16 25 N -0.34 -8.30 3.81 -196.08 -0.75 -9.05 16 26 C 0.29 7.09 12.26 180.25 2.21 9.30 16 27 N -0.56 -13.50 11.19 -203.70 -2.28 -15.78 16 28 C 0.22 4.16 13.03 180.75 2.35 6.51 16 29 N -0.33 -7.19 12.02 -61.22 -0.74 -7.93 16 30 N -0.48 -13.30 6.62 -181.90 -1.20 -14.50 16 31 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 32 H 0.02 1.26 7.46 -2.39 -0.02 1.24 16 33 H 0.00 -0.29 7.67 -2.39 -0.02 -0.31 16 34 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.09 2.38 7.49 -2.39 -0.02 2.37 16 37 H 0.05 1.94 7.70 -2.39 -0.02 1.92 16 38 H 0.16 3.21 7.63 -2.91 -0.02 3.19 16 39 H 0.20 0.95 8.06 -2.91 -0.02 0.92 16 40 H 0.17 2.40 7.72 -2.91 -0.02 2.38 16 41 H 0.23 5.20 7.99 -2.91 -0.02 5.18 16 42 H 0.26 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -76.57 355.99 4.15 -72.43 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 1.06 Total: 13.67 kcal Atomic # 6 Polarization: 39.30 SS G_CDS: 10.10 Total: 49.40 kcal Atomic # 7 Polarization: -151.01 SS G_CDS: -8.98 Total: -159.98 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.06 Total: -23.09 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -76.57 4.15 -72.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032707192.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.605 kcal (2) G-P(sol) polarization free energy of solvation -76.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds