Wall clock time and date at job start Sat Apr 11 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00480 * 2 1 4 4 H 1.48497 * 109.47346 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46899 * 299.99870 * 3 2 1 6 6 H 1.48505 * 109.46826 * 59.99698 * 3 2 1 7 7 C 1.38819 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.47864 * 126.95006 * 359.97438 * 9 7 2 11 11 C 1.55483 * 105.17696 * 181.92308 * 10 9 7 12 12 H 1.09004 * 116.03912 * 159.74545 * 11 10 9 13 13 C 1.57439 * 99.68351 * 32.85610 * 11 10 9 14 14 C 1.49296 * 126.94463 * 179.97438 * 9 7 2 15 15 H 1.09007 * 116.14986 * 15.84062 * 14 9 7 16 16 C 1.56021 * 104.09549 * 246.70100 * 14 9 7 17 17 N 1.47872 * 105.10030 * 288.76791 * 16 14 9 18 18 C 1.34775 * 126.94295 * 181.98240 * 17 16 14 19 19 O 1.21583 * 119.99589 * 184.90130 * 18 17 16 20 20 C 1.47631 * 120.00310 * 4.89858 * 18 17 16 21 21 C 1.39620 * 120.18602 * 304.95174 * 20 18 17 22 22 C 1.37867 * 119.91843 * 180.02562 * 21 20 18 23 23 C 1.38501 * 120.29668 * 359.97438 * 22 21 20 24 24 C 1.38115 * 120.38211 * 359.74815 * 23 22 21 25 25 C 1.38710 * 120.07362 * 0.50619 * 24 23 22 26 26 N 1.39849 * 120.14698 * 179.76891 * 25 24 23 27 27 C 1.35146 * 127.39549 * 353.51950 * 26 25 24 28 28 N 1.30721 * 107.26246 * 180.02562 * 27 26 25 29 29 N 1.28421 * 110.65281 * 359.97438 * 28 27 26 30 30 N 1.28943 * 110.22083 * 0.02562 * 29 28 27 31 31 H 0.96996 * 120.00079 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.31243 * 300.91166 * 10 9 7 33 33 H 1.09000 * 110.31834 * 63.08947 * 10 9 7 34 34 H 1.08996 * 112.53300 * 191.70837 * 13 11 10 35 35 H 1.08997 * 112.31615 * 64.17122 * 13 11 10 36 36 H 1.08992 * 110.31565 * 169.86199 * 16 14 9 37 37 H 1.08999 * 110.39942 * 47.70946 * 16 14 9 38 38 H 1.08007 * 120.04077 * 0.04297 * 21 20 18 39 39 H 1.07993 * 119.85290 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.80658 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.96236 * 180.27151 * 24 23 22 42 42 H 1.08005 * 126.37215 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1423 -2.5669 0.0005 11 6 -0.3650 -4.1048 0.0509 12 1 -1.3443 -4.4355 0.3972 13 6 0.8839 -4.5252 0.9124 14 6 1.9101 -3.7618 0.0005 15 1 2.9644 -3.8353 0.2676 16 6 1.5081 -4.3458 -1.3893 17 7 0.0513 -4.5835 -1.3005 18 6 -0.7414 -5.1189 -2.2500 19 8 -1.9435 -5.1758 -2.0770 20 6 -0.1501 -5.6360 -3.5000 21 6 0.6582 -4.8135 -4.2870 22 6 1.2071 -5.3019 -5.4536 23 6 0.9609 -6.6063 -5.8490 24 6 0.1678 -7.4324 -5.0770 25 6 -0.3967 -6.9555 -3.9031 26 7 -1.2039 -7.7892 -3.1227 27 6 -1.6309 -9.0354 -3.4247 28 7 -2.3594 -9.4496 -2.4215 29 7 -2.4220 -8.5514 -1.5058 30 7 -1.7457 -7.5107 -1.8555 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5814 -2.0913 0.8776 33 1 -0.5740 -2.1534 -0.9110 34 1 1.0490 -5.6026 0.9108 35 1 0.8451 -4.1191 1.9232 36 1 2.0340 -5.2827 -1.5725 37 1 1.7269 -3.6286 -2.1804 38 1 0.8535 -3.7959 -3.9822 39 1 1.8325 -4.6650 -6.0613 40 1 1.3953 -6.9809 -6.7641 41 1 -0.0161 -8.4497 -5.3895 42 1 -1.4117 -9.5862 -4.3275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032776032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:14 Heat of formation + Delta-G solvation = 201.062220 kcal Electronic energy + Delta-G solvation = -30027.873162 eV Core-core repulsion = 26013.857848 eV Total energy + Delta-G solvation = -4014.015314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.25634 -40.51730 -39.39309 -37.50880 -35.31938 -33.66641 -32.46774 -32.03721 -30.97863 -30.37803 -28.99685 -28.54378 -25.49628 -25.23021 -24.60304 -23.54972 -22.51264 -22.11203 -20.69572 -19.88727 -19.09566 -18.35769 -17.59990 -16.68226 -16.56180 -16.35428 -15.98161 -15.58713 -15.33325 -15.06255 -14.41123 -14.30396 -13.93182 -13.69321 -13.41817 -13.32940 -12.90898 -12.67651 -12.30512 -12.11246 -11.98090 -11.74377 -11.72483 -11.58748 -11.30893 -11.10415 -10.97342 -10.88900 -10.79800 -10.62592 -10.52314 -10.25405 -10.08190 -9.66963 -9.61987 -9.38687 -8.95600 -8.74279 -7.99955 -6.96200 -5.79853 -3.14798 0.08464 0.69890 1.46259 1.64391 2.20952 2.89963 3.17220 3.34064 3.39169 3.42546 3.45609 3.82257 3.97743 4.37153 4.38923 4.50799 4.62551 4.68433 4.87770 4.96408 5.07351 5.15610 5.22680 5.30677 5.34813 5.40912 5.53075 5.61602 5.75586 5.78887 5.81257 5.89470 5.96641 6.08433 6.16671 6.27876 6.40441 6.41837 6.49631 6.57370 6.67073 7.40330 7.46683 7.69517 8.02729 8.07364 8.34549 8.52572 9.06877 9.67783 10.37020 11.32057 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016446 B = 0.003628 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.106456 B = 7716.882574 C = 8701.941374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.173 3.827 11 C 0.105 3.895 12 H 0.115 0.885 13 C -0.150 4.150 14 C 0.141 3.859 15 H 0.106 0.894 16 C 0.083 3.917 17 N -0.596 5.596 18 C 0.571 3.429 19 O -0.519 6.519 20 C -0.098 4.098 21 C -0.065 4.065 22 C -0.112 4.112 23 C -0.084 4.084 24 C -0.129 4.129 25 C 0.165 3.835 26 N -0.333 5.333 27 C 0.216 3.784 28 N -0.334 5.334 29 N -0.048 5.048 30 N -0.019 5.019 31 H 0.254 0.746 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.967 -16.138 -12.566 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.360 4.360 8 H 0.099 0.901 9 N -0.321 5.321 10 C 0.048 3.952 11 C 0.002 3.998 12 H 0.133 0.867 13 C -0.189 4.189 14 C 0.032 3.968 15 H 0.124 0.876 16 C -0.042 4.042 17 N -0.329 5.329 18 C 0.357 3.643 19 O -0.395 6.395 20 C -0.103 4.103 21 C -0.084 4.084 22 C -0.131 4.131 23 C -0.102 4.102 24 C -0.150 4.150 25 C 0.071 3.929 26 N -0.123 5.123 27 C -0.081 4.081 28 N -0.181 5.181 29 N -0.043 5.043 30 N -0.004 5.004 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.156 0.844 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.525 -15.834 -11.189 19.706 hybrid contribution 0.897 1.042 -1.138 1.784 sum 4.423 -14.792 -12.326 19.756 Atomic orbital electron populations 1.69930 1.04939 1.25226 1.56321 1.24820 0.95657 0.97691 1.02017 0.86061 0.78667 0.83791 0.77281 1.20471 1.21805 1.21722 1.19084 0.90402 0.82042 1.44488 0.90115 1.45264 1.01352 0.99243 1.86269 1.21838 0.84633 0.87301 1.01402 1.24322 0.97906 0.97388 0.80135 0.86673 1.24201 0.96607 0.98896 0.99230 1.23173 0.96555 0.86351 0.90716 0.87580 1.23368 0.79942 0.98675 1.02225 1.49048 1.09208 1.59293 1.15381 1.17367 0.86156 0.78562 0.82184 1.90815 1.13644 1.56702 1.78364 1.19918 1.00023 0.92307 0.98065 1.21461 0.93097 1.00301 0.93522 1.21326 0.99573 0.95898 0.96297 1.21134 0.96471 0.93443 0.99191 1.20783 0.99867 1.01208 0.93143 1.17419 0.94626 0.89093 0.91780 1.49063 1.35500 1.12431 1.15338 1.27376 0.94510 0.84730 1.01515 1.74423 1.19445 1.24412 0.99795 1.78134 1.12536 0.95023 1.18623 1.83260 1.09278 1.16485 0.91412 0.93602 0.92502 0.93459 0.91691 0.89677 0.93183 0.91035 0.83587 0.84245 0.84143 0.84375 0.74766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.35 10.56 55.49 0.59 -25.76 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 3 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.01 10.38 -15.06 -0.16 -6.16 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 9 N -0.60 -13.98 3.02 -156.67 -0.47 -14.45 16 10 C 0.17 4.12 4.74 -1.97 -0.01 4.11 16 11 C 0.10 2.07 5.22 -62.64 -0.33 1.74 16 12 H 0.12 2.30 8.07 -51.93 -0.42 1.88 16 13 C -0.15 -2.59 6.83 -22.10 -0.15 -2.74 16 14 C 0.14 2.56 5.53 -62.55 -0.35 2.21 16 15 H 0.11 1.72 8.14 -51.92 -0.42 1.30 16 16 C 0.08 1.38 5.31 -1.67 -0.01 1.37 16 17 N -0.60 -11.05 2.95 -158.05 -0.47 -11.52 16 18 C 0.57 10.72 6.03 -12.43 -0.07 10.64 16 19 O -0.52 -11.53 14.99 5.29 0.08 -11.45 16 20 C -0.10 -1.42 5.31 -104.83 -0.56 -1.97 16 21 C -0.06 -0.76 8.63 -39.20 -0.34 -1.10 16 22 C -0.11 -0.90 10.03 -39.62 -0.40 -1.30 16 23 C -0.08 -0.53 10.03 -39.53 -0.40 -0.93 16 24 C -0.13 -0.97 9.48 -39.45 -0.37 -1.35 16 25 C 0.16 2.02 6.70 -83.31 -0.56 1.46 16 26 N -0.33 -4.60 3.81 -11.53 -0.04 -4.65 16 27 C 0.22 2.29 12.15 -90.10 -1.09 1.20 16 28 N -0.33 -4.82 12.15 29.66 0.36 -4.46 16 29 N -0.05 -0.85 13.39 60.35 0.81 -0.04 16 30 N -0.02 -0.35 9.77 60.35 0.59 0.24 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.06 1.50 7.46 -51.93 -0.39 1.11 16 33 H 0.05 1.29 7.68 -51.93 -0.40 0.89 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.23 6.70 -51.93 -0.35 0.88 16 38 H 0.15 1.85 6.85 -52.48 -0.36 1.49 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.14 0.52 6.92 -52.49 -0.36 0.15 16 42 H 0.24 0.94 7.23 -52.48 -0.38 0.57 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -35.57 349.08 -7.94 -43.51 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -4.74 Total: 0.12 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -4.88 Total: 6.96 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 1.36 Total: -60.63 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.57 -7.94 -43.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032776032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.577 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 209.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds