Wall clock time and date at job start Sat Apr 11 2020 05:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00480 * 2 1 4 4 H 1.48497 * 109.47346 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46899 * 299.99870 * 3 2 1 6 6 H 1.48505 * 109.46826 * 59.99698 * 3 2 1 7 7 C 1.38819 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00059 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99743 * 0.02562 * 7 2 1 10 10 C 1.47864 * 126.95006 * 359.97438 * 9 7 2 11 11 C 1.55483 * 105.17696 * 181.92308 * 10 9 7 12 12 H 1.09004 * 116.03912 * 159.74545 * 11 10 9 13 13 C 1.57439 * 99.68351 * 32.85610 * 11 10 9 14 14 C 1.49296 * 126.94463 * 179.97438 * 9 7 2 15 15 H 1.09007 * 116.14986 * 15.84062 * 14 9 7 16 16 C 1.56021 * 104.09549 * 246.70100 * 14 9 7 17 17 N 1.47872 * 105.10030 * 288.76791 * 16 14 9 18 18 C 1.34775 * 126.94295 * 181.98240 * 17 16 14 19 19 O 1.21583 * 119.99589 * 184.90130 * 18 17 16 20 20 C 1.47631 * 120.00310 * 4.89858 * 18 17 16 21 21 C 1.39620 * 120.18602 * 304.95174 * 20 18 17 22 22 C 1.37867 * 119.91843 * 180.02562 * 21 20 18 23 23 C 1.38501 * 120.29668 * 359.97438 * 22 21 20 24 24 C 1.38115 * 120.38211 * 359.74815 * 23 22 21 25 25 C 1.38710 * 120.07362 * 0.50619 * 24 23 22 26 26 N 1.39849 * 120.14698 * 179.76891 * 25 24 23 27 27 C 1.35146 * 127.39549 * 353.51950 * 26 25 24 28 28 N 1.30721 * 107.26246 * 180.02562 * 27 26 25 29 29 N 1.28421 * 110.65281 * 359.97438 * 28 27 26 30 30 N 1.28943 * 110.22083 * 0.02562 * 29 28 27 31 31 H 0.96996 * 120.00079 * 0.02562 * 1 2 3 32 32 H 1.09004 * 110.31243 * 300.91166 * 10 9 7 33 33 H 1.09000 * 110.31834 * 63.08947 * 10 9 7 34 34 H 1.08996 * 112.53300 * 191.70837 * 13 11 10 35 35 H 1.08997 * 112.31615 * 64.17122 * 13 11 10 36 36 H 1.08992 * 110.31565 * 169.86199 * 16 14 9 37 37 H 1.08999 * 110.39942 * 47.70946 * 16 14 9 38 38 H 1.08007 * 120.04077 * 0.04297 * 21 20 18 39 39 H 1.07993 * 119.85290 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.80658 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.96236 * 180.27151 * 24 23 22 42 42 H 1.08005 * 126.37215 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1423 -2.5669 0.0005 11 6 -0.3650 -4.1048 0.0509 12 1 -1.3443 -4.4355 0.3972 13 6 0.8839 -4.5252 0.9124 14 6 1.9101 -3.7618 0.0005 15 1 2.9644 -3.8353 0.2676 16 6 1.5081 -4.3458 -1.3893 17 7 0.0513 -4.5835 -1.3005 18 6 -0.7414 -5.1189 -2.2500 19 8 -1.9435 -5.1758 -2.0770 20 6 -0.1501 -5.6360 -3.5000 21 6 0.6582 -4.8135 -4.2870 22 6 1.2071 -5.3019 -5.4536 23 6 0.9609 -6.6063 -5.8490 24 6 0.1678 -7.4324 -5.0770 25 6 -0.3967 -6.9555 -3.9031 26 7 -1.2039 -7.7892 -3.1227 27 6 -1.6309 -9.0354 -3.4247 28 7 -2.3594 -9.4496 -2.4215 29 7 -2.4220 -8.5514 -1.5058 30 7 -1.7457 -7.5107 -1.8555 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5814 -2.0913 0.8776 33 1 -0.5740 -2.1534 -0.9110 34 1 1.0490 -5.6026 0.9108 35 1 0.8451 -4.1191 1.9232 36 1 2.0340 -5.2827 -1.5725 37 1 1.7269 -3.6286 -2.1804 38 1 0.8535 -3.7959 -3.9822 39 1 1.8325 -4.6650 -6.0613 40 1 1.3953 -6.9809 -6.7641 41 1 -0.0161 -8.4497 -5.3895 42 1 -1.4117 -9.5862 -4.3275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032776032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:13 Heat of formation + Delta-G solvation = 176.838379 kcal Electronic energy + Delta-G solvation = -30028.923587 eV Core-core repulsion = 26013.857848 eV Total energy + Delta-G solvation = -4015.065738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.26536 -41.82469 -40.52379 -38.89659 -36.24719 -35.46040 -33.64462 -33.34390 -32.20046 -31.20944 -30.59597 -30.25335 -27.03058 -26.45965 -25.68491 -24.92591 -23.74034 -22.96580 -22.01444 -21.45536 -20.42618 -19.55117 -18.93988 -18.11102 -17.67983 -17.52782 -17.25774 -16.84795 -16.43504 -16.10000 -15.92152 -15.61374 -15.23372 -15.00473 -14.65928 -14.44842 -14.00248 -13.86190 -13.66850 -13.61167 -13.42742 -13.17557 -12.89659 -12.84911 -12.76503 -12.61846 -12.45562 -12.29740 -12.20845 -12.05363 -11.98827 -11.89710 -11.58594 -11.55740 -11.04989 -10.74461 -10.16718 -9.75773 -9.53768 -8.94118 -7.85046 -5.21840 -0.77395 -0.02637 0.58546 0.78935 1.21986 1.46802 1.47790 1.58070 1.66671 1.91855 2.47637 2.57881 2.99250 3.26035 3.32480 3.33545 3.46286 3.68385 3.73775 3.84319 3.88339 3.99958 4.06870 4.15309 4.18654 4.24256 4.37876 4.40248 4.51124 4.62421 4.67858 4.80002 4.90085 4.95578 5.05918 5.08090 5.17014 5.18440 5.33812 5.37425 5.42750 5.49925 5.62883 5.76582 6.06899 6.60835 7.00697 7.11227 7.31538 7.69091 8.39951 9.26428 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016446 B = 0.003628 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.106456 B = 7716.882574 C = 8701.941374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.071 4.071 3 Si 0.978 3.022 4 H -0.256 1.256 5 H -0.299 1.299 6 H -0.299 1.299 7 C -0.228 4.228 8 H 0.099 0.901 9 N -0.613 5.613 10 C 0.192 3.808 11 C 0.104 3.896 12 H 0.103 0.897 13 C -0.129 4.129 14 C 0.139 3.861 15 H 0.139 0.861 16 C 0.096 3.904 17 N -0.602 5.602 18 C 0.566 3.434 19 O -0.568 6.568 20 C -0.134 4.134 21 C -0.081 4.081 22 C -0.100 4.100 23 C -0.060 4.060 24 C -0.107 4.107 25 C 0.141 3.859 26 N -0.334 5.334 27 C 0.240 3.760 28 N -0.360 5.360 29 N -0.080 5.080 30 N -0.073 5.073 31 H 0.243 0.757 32 H 0.017 0.983 33 H -0.003 1.003 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.122 0.878 39 H 0.169 0.831 40 H 0.193 0.807 41 H 0.190 0.810 42 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.789 -19.329 -16.322 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.226 1.226 6 H -0.227 1.227 7 C -0.357 4.357 8 H 0.117 0.883 9 N -0.338 5.338 10 C 0.066 3.934 11 C 0.000 4.000 12 H 0.120 0.880 13 C -0.168 4.168 14 C 0.032 3.968 15 H 0.156 0.844 16 C -0.028 4.028 17 N -0.334 5.334 18 C 0.355 3.645 19 O -0.448 6.448 20 C -0.139 4.139 21 C -0.100 4.100 22 C -0.119 4.119 23 C -0.078 4.078 24 C -0.127 4.127 25 C 0.048 3.952 26 N -0.125 5.125 27 C -0.055 4.055 28 N -0.208 5.208 29 N -0.075 5.075 30 N -0.059 5.059 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.015 0.985 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.140 0.860 39 H 0.186 0.814 40 H 0.210 0.790 41 H 0.207 0.793 42 H 0.319 0.681 Dipole moment (debyes) X Y Z Total from point charges 7.424 -19.061 -14.958 25.341 hybrid contribution -0.241 1.948 -0.157 1.969 sum 7.183 -17.113 -15.115 23.935 Atomic orbital electron populations 1.70187 1.06764 1.25068 1.58782 1.25682 0.96329 1.01254 1.03078 0.85006 0.78648 0.79491 0.76162 1.17930 1.22641 1.22697 1.19599 0.91328 0.82868 1.41886 0.88315 1.45487 1.01199 1.01037 1.86067 1.21357 0.85176 0.89752 0.97123 1.24053 0.98881 0.94485 0.82532 0.87950 1.24085 0.94119 1.00325 0.98288 1.23574 0.98105 0.83317 0.91776 0.84388 1.23227 0.78978 1.00008 1.00621 1.49121 1.10110 1.59374 1.14821 1.18173 0.85652 0.77419 0.83300 1.90765 1.15875 1.58444 1.79689 1.19656 1.02904 0.94396 0.96923 1.21350 0.94156 0.99202 0.95286 1.21706 0.98382 0.97332 0.94452 1.21769 0.94216 0.91924 0.99875 1.21432 0.97488 1.03495 0.90284 1.17872 0.95731 0.88288 0.93350 1.49165 1.35419 1.13528 1.14419 1.28602 0.91568 0.83391 1.01915 1.74306 1.21170 1.24655 1.00705 1.78105 1.13420 0.95718 1.20247 1.83211 1.11068 1.17321 0.94259 0.94783 0.96527 0.98464 0.88923 0.90003 0.89579 0.91922 0.86013 0.81377 0.78985 0.79322 0.68070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.89 10.56 21.65 0.23 -58.66 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 3 Si 0.98 44.86 29.55 68.60 2.03 46.89 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.23 -11.96 10.38 84.04 0.87 -11.09 16 8 H 0.10 4.73 7.83 -2.91 -0.02 4.71 16 9 N -0.61 -29.62 3.02 -649.60 -1.96 -31.59 16 10 C 0.19 9.94 4.74 86.97 0.41 10.35 16 11 C 0.10 4.41 5.22 46.87 0.24 4.66 16 12 H 0.10 4.56 8.07 -2.39 -0.02 4.54 16 13 C -0.13 -4.45 6.83 33.59 0.23 -4.23 16 14 C 0.14 4.92 5.53 46.93 0.26 5.18 16 15 H 0.14 4.04 8.14 -2.38 -0.02 4.02 16 16 C 0.10 3.13 5.31 87.16 0.46 3.59 16 17 N -0.60 -23.39 2.95 -772.21 -2.28 -25.67 16 18 C 0.57 22.45 6.03 86.72 0.52 22.97 16 19 O -0.57 -27.43 14.99 -3.98 -0.06 -27.49 16 20 C -0.13 -3.83 5.31 -20.00 -0.11 -3.94 16 21 C -0.08 -1.81 8.63 22.52 0.19 -1.62 16 22 C -0.10 -1.16 10.03 22.24 0.22 -0.93 16 23 C -0.06 -0.34 10.03 22.30 0.22 -0.11 16 24 C -0.11 -0.93 9.48 22.35 0.21 -0.71 16 25 C 0.14 3.06 6.70 38.44 0.26 3.32 16 26 N -0.33 -8.73 3.81 -190.39 -0.72 -9.46 16 27 C 0.24 4.32 12.15 180.17 2.19 6.51 16 28 N -0.36 -10.08 12.15 -60.09 -0.73 -10.81 16 29 N -0.08 -2.91 13.39 37.02 0.50 -2.42 16 30 N -0.07 -2.73 9.77 37.02 0.36 -2.37 16 31 H 0.24 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.02 0.97 7.46 -2.38 -0.02 0.95 16 33 H 0.00 -0.17 7.68 -2.39 -0.02 -0.19 16 34 H 0.09 2.74 8.14 -2.39 -0.02 2.73 16 35 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 2.17 6.70 -2.39 -0.02 2.16 16 38 H 0.12 3.22 6.85 -2.91 -0.02 3.20 16 39 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 40 H 0.19 -0.69 8.06 -2.91 -0.02 -0.71 16 41 H 0.19 -0.30 6.92 -2.91 -0.02 -0.32 16 42 H 0.30 0.35 7.23 -2.91 -0.02 0.33 16 Total: -1.00 -91.27 349.08 5.09 -86.18 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.07 Total: 4.94 kcal Atomic # 6 Polarization: 23.79 SS G_CDS: 6.66 Total: 30.45 kcal Atomic # 7 Polarization: -136.36 SS G_CDS: -4.61 Total: -140.97 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.06 Total: -27.49 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -91.27 5.09 -86.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032776032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 263.019 kcal (2) G-P(sol) polarization free energy of solvation -91.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds