Wall clock time and date at job start Sat Apr 11 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 119.99871 * 2 1 4 4 H 1.48508 * 109.47236 * 274.15282 * 3 2 1 5 5 H 1.48497 * 109.47095 * 34.15034 * 3 2 1 6 6 H 1.48500 * 109.47335 * 154.15420 * 3 2 1 7 7 C 1.38817 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99696 * 197.02582 * 7 2 1 9 9 N 1.36932 * 120.00057 * 17.02035 * 7 2 1 10 10 C 1.47160 * 120.98076 * 26.61431 * 9 7 2 11 11 C 1.53298 * 108.38242 * 129.44332 * 10 9 7 12 12 O 1.42959 * 109.26737 * 52.27718 * 11 10 9 13 13 C 1.42961 * 114.16568 * 297.49976 * 12 11 10 14 14 H 1.08994 * 109.51736 * 302.54700 * 13 12 11 15 15 C 1.52999 * 109.50797 * 182.44674 * 13 12 11 16 16 N 1.46504 * 109.47120 * 65.10244 * 15 13 12 17 17 C 1.34775 * 119.99608 * 180.26920 * 16 15 13 18 18 O 1.21554 * 120.00609 * 359.73238 * 17 16 15 19 19 C 1.47845 * 119.99724 * 179.72178 * 17 16 15 20 20 C 1.39581 * 120.14432 * 359.73499 * 19 17 16 21 21 C 1.37958 * 119.85437 * 179.79096 * 20 19 17 22 22 C 1.38355 * 120.14353 * 0.47802 * 21 20 19 23 23 C 1.50703 * 119.85386 * 179.76923 * 22 21 20 24 24 F 1.39901 * 109.47134 * 29.98170 * 23 22 21 25 25 F 1.39903 * 109.47179 * 149.97792 * 23 22 21 26 26 C 1.38362 * 120.29244 * 359.74812 * 22 21 20 27 27 C 1.37952 * 120.14586 * 0.02562 * 26 22 21 28 28 C 1.47152 * 120.98262 * 206.58942 * 9 7 2 29 29 H 0.97001 * 120.00458 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.67669 * 249.16220 * 10 9 7 31 31 H 1.09000 * 109.67973 * 9.68313 * 10 9 7 32 32 H 1.09002 * 109.50827 * 172.22832 * 11 10 9 33 33 H 1.09004 * 109.50860 * 292.37425 * 11 10 9 34 34 H 1.08996 * 109.47376 * 305.10081 * 15 13 12 35 35 H 1.09005 * 109.47355 * 185.10223 * 15 13 12 36 36 H 0.97001 * 119.99924 * 0.02562 * 16 15 13 37 37 H 1.08004 * 120.07147 * 359.97438 * 20 19 17 38 38 H 1.07997 * 119.92701 * 180.22833 * 21 20 19 39 39 H 1.08998 * 109.47035 * 269.97777 * 23 22 21 40 40 H 1.08003 * 119.92599 * 179.97438 * 26 22 21 41 41 H 1.08007 * 120.07526 * 179.97438 * 27 26 22 42 42 H 1.09001 * 109.68083 * 110.83844 * 28 9 7 43 43 H 1.08995 * 109.71244 * 350.30343 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4098 2.0972 -1.3965 5 1 1.4942 2.6257 0.7859 6 1 3.5888 1.4165 0.6104 7 6 2.0103 -1.2022 -0.0005 8 1 3.0548 -1.2227 0.2733 9 7 1.3706 -2.3619 -0.3482 10 6 0.2046 -2.3442 -1.2457 11 6 0.4386 -3.3678 -2.3626 12 8 0.7739 -4.6306 -1.7825 13 6 1.9841 -4.6222 -1.0214 14 1 2.8088 -4.2910 -1.6524 15 6 2.2716 -6.0327 -0.5032 16 7 2.5350 -6.9246 -1.6353 17 6 2.8092 -8.2262 -1.4181 18 8 2.8430 -8.6590 -0.2827 19 6 3.0689 -9.1275 -2.5608 20 6 3.0253 -8.6350 -3.8661 21 6 3.2729 -9.4804 -4.9278 22 6 3.5541 -10.8161 -4.7014 23 6 3.8183 -11.7350 -5.8663 24 9 4.3902 -11.0063 -6.9147 25 9 4.6965 -12.7494 -5.4702 26 6 3.5942 -11.3118 -3.4103 27 6 3.3531 -10.4760 -2.3395 28 6 1.8293 -3.6629 0.1643 29 1 -0.4851 0.8400 0.0004 30 1 -0.6928 -2.6094 -0.6868 31 1 0.0883 -1.3498 -1.6768 32 1 -0.4684 -3.4702 -2.9584 33 1 1.2571 -3.0314 -2.9990 34 1 1.4091 -6.3980 0.0541 35 1 3.1433 -6.0089 0.1509 36 1 2.5084 -6.5791 -2.5413 37 1 2.8013 -7.5936 -4.0444 38 1 3.2431 -9.0998 -5.9380 39 1 2.8797 -12.1769 -6.2006 40 1 3.8139 -12.3555 -3.2404 41 1 3.3843 -10.8642 -1.3321 42 1 1.0953 -4.0608 0.8650 43 1 2.7889 -3.5424 0.6668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035541124.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:24 Heat of formation + Delta-G solvation = -150.993042 kcal Electronic energy + Delta-G solvation = -28551.188965 eV Core-core repulsion = 24038.925452 eV Total energy + Delta-G solvation = -4512.263513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.97923 -48.00682 -41.38070 -40.20553 -39.37283 -36.55524 -35.87750 -33.66566 -33.21790 -32.35370 -31.90333 -29.33294 -28.02658 -26.73531 -24.99715 -23.93109 -23.82336 -23.03106 -21.77498 -21.14344 -19.36148 -18.84788 -18.42669 -18.24285 -18.11498 -17.54511 -17.23956 -16.89973 -16.27979 -16.11543 -16.00701 -15.66038 -15.58741 -15.41348 -15.02308 -14.87899 -14.71696 -14.59662 -14.52048 -14.26051 -14.12701 -13.96129 -13.67267 -13.28957 -13.22546 -13.02038 -12.71259 -12.54095 -12.21540 -12.17464 -12.08552 -12.03370 -11.88738 -11.38137 -11.14751 -10.81029 -10.55954 -10.34720 -10.10895 -10.02017 -8.76814 -7.92549 -5.40215 -0.44789 0.25789 1.46531 1.47524 1.57017 1.65645 2.00196 2.47122 2.61776 2.75932 2.76839 3.22483 3.26293 3.46178 3.49637 3.62998 3.85271 3.92487 3.97790 4.02466 4.05135 4.23423 4.25004 4.43729 4.47098 4.50857 4.58346 4.61195 4.70893 4.74489 4.89136 4.91856 5.04053 5.08788 5.19832 5.23051 5.24378 5.29286 5.54748 5.60550 5.68486 6.24114 6.31507 6.42439 7.05043 7.07307 7.72951 8.26529 9.13514 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023218 B = 0.001943 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.661576 B =14409.947967 C =14929.118150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.142 3.858 11 C 0.054 3.946 12 O -0.389 6.389 13 C 0.079 3.921 14 H 0.072 0.928 15 C 0.140 3.860 16 N -0.704 5.704 17 C 0.553 3.447 18 O -0.578 6.578 19 C -0.131 4.131 20 C -0.083 4.083 21 C -0.093 4.093 22 C -0.148 4.148 23 C 0.311 3.689 24 F -0.207 7.207 25 F -0.209 7.209 26 C -0.094 4.094 27 C -0.072 4.072 28 C 0.116 3.884 29 H 0.252 0.748 30 H -0.002 1.002 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.414 0.586 37 H 0.152 0.848 38 H 0.160 0.840 39 H 0.166 0.834 40 H 0.155 0.845 41 H 0.136 0.864 42 H 0.018 0.982 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.375 -23.048 -14.679 28.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.799 3.201 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.023 4.023 12 O -0.308 6.308 13 C 0.020 3.980 14 H 0.090 0.910 15 C 0.015 3.985 16 N -0.356 5.356 17 C 0.341 3.659 18 O -0.459 6.459 19 C -0.134 4.134 20 C -0.101 4.101 21 C -0.111 4.111 22 C -0.149 4.149 23 C 0.258 3.742 24 F -0.189 7.189 25 F -0.190 7.190 26 C -0.112 4.112 27 C -0.091 4.091 28 C -0.011 4.011 29 H 0.061 0.939 30 H 0.016 0.984 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.252 0.748 37 H 0.169 0.831 38 H 0.177 0.823 39 H 0.183 0.817 40 H 0.173 0.827 41 H 0.154 0.846 42 H 0.035 0.965 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.227 -23.341 -13.889 27.865 hybrid contribution 0.206 1.688 0.235 1.717 sum 6.434 -21.653 -13.653 26.394 Atomic orbital electron populations 1.70190 1.06734 1.26078 1.55129 1.25845 0.96103 1.01672 1.00997 0.85192 0.78115 0.79213 0.77542 1.20905 1.22355 1.19206 1.19557 0.93044 0.85535 1.41409 0.90936 1.44348 1.34241 1.01915 1.53219 1.21322 0.88012 0.98425 0.90606 1.23162 1.00877 0.83508 0.94762 1.87804 1.42326 1.32063 1.68645 1.22641 0.87654 0.94006 0.93722 0.91007 1.21246 1.01685 0.86783 0.88752 1.45748 1.70228 1.08408 1.11202 1.18626 0.76209 0.82243 0.88791 1.90761 1.53659 1.76486 1.24984 1.20056 1.05219 0.94841 0.93252 1.21542 0.96746 1.01262 0.90579 1.21140 0.97396 0.91810 1.00758 1.20890 1.03031 0.95837 0.95131 1.20722 0.90751 0.80704 0.82033 1.92995 1.87522 1.78845 1.59501 1.92991 1.73219 1.61415 1.91368 1.21081 0.98134 1.01389 0.90616 1.21339 0.95513 0.91805 1.00460 1.21603 0.98840 0.86288 0.94323 0.93927 0.98359 0.91499 0.87236 0.92865 0.91691 0.89113 0.74821 0.83058 0.82288 0.81729 0.82694 0.84585 0.96451 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.34 11.17 21.65 0.24 -54.10 16 2 C -0.05 -2.76 4.94 84.86 0.42 -2.34 16 3 Si 0.97 43.64 29.59 68.60 2.03 45.67 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 7 C -0.27 -14.20 9.64 84.04 0.81 -13.39 16 8 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 9 N -0.61 -30.09 3.05 -697.52 -2.13 -32.21 16 10 C 0.14 6.66 5.44 86.35 0.47 7.13 16 11 C 0.05 1.91 6.98 72.08 0.50 2.41 16 12 O -0.39 -13.17 10.33 -148.98 -1.54 -14.71 16 13 C 0.08 2.52 2.81 30.69 0.09 2.61 16 14 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 15 C 0.14 3.89 5.34 86.38 0.46 4.35 16 16 N -0.70 -16.69 5.46 -465.96 -2.54 -19.23 16 17 C 0.55 14.40 7.77 86.79 0.67 15.08 16 18 O -0.58 -19.39 16.35 -3.89 -0.06 -19.45 16 19 C -0.13 -2.61 5.87 -20.09 -0.12 -2.73 16 20 C -0.08 -1.20 9.54 22.53 0.21 -0.99 16 21 C -0.09 -1.11 9.38 22.23 0.21 -0.90 16 22 C -0.15 -1.77 5.74 -19.81 -0.11 -1.89 16 23 C 0.31 2.80 5.65 71.24 0.40 3.20 16 24 F -0.21 -2.65 16.47 44.97 0.74 -1.91 16 25 F -0.21 -2.72 16.47 44.97 0.74 -1.98 16 26 C -0.09 -1.28 9.38 22.23 0.21 -1.07 16 27 C -0.07 -1.32 9.60 22.52 0.22 -1.10 16 28 C 0.12 4.66 6.02 86.35 0.52 5.18 16 29 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 30 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.07 3.49 6.17 -2.39 -0.01 3.47 16 32 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 33 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 36 H 0.41 7.83 6.51 -92.71 -0.60 7.22 16 37 H 0.15 1.61 6.41 -2.91 -0.02 1.59 16 38 H 0.16 1.23 7.59 -2.91 -0.02 1.21 16 39 H 0.17 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.16 1.50 7.59 -2.91 -0.02 1.48 16 41 H 0.14 2.62 7.65 -2.91 -0.02 2.60 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 2.76 7.96 -2.39 -0.02 2.74 16 Total: -1.00 -70.77 365.54 2.90 -67.87 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.45 Total: 14.49 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 4.96 Total: 15.56 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -4.43 Total: -105.55 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.60 Total: -34.16 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 1.48 Total: -3.89 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -70.77 2.90 -67.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035541124.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.122 kcal (2) G-P(sol) polarization free energy of solvation -70.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds