Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99761 * 2 1 4 4 H 1.48505 * 109.46768 * 239.99635 * 3 2 1 5 5 H 1.48496 * 109.47582 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47021 * 120.00210 * 3 2 1 7 7 C 1.38811 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99412 * 196.90741 * 7 2 1 9 9 N 1.36928 * 120.00352 * 16.90698 * 7 2 1 10 10 C 1.47149 * 120.98293 * 206.24836 * 9 7 2 11 11 C 1.53301 * 108.38639 * 230.51175 * 10 9 7 12 12 O 1.42952 * 109.26276 * 307.72310 * 11 10 9 13 13 C 1.42968 * 114.17016 * 62.49936 * 12 11 10 14 14 H 1.08997 * 109.51268 * 57.45149 * 13 12 11 15 15 C 1.52999 * 109.51037 * 177.54733 * 13 12 11 16 16 N 1.46503 * 109.47458 * 299.89784 * 15 13 12 17 17 C 1.34779 * 119.99760 * 180.02562 * 16 15 13 18 18 O 1.21542 * 120.00275 * 359.97438 * 17 16 15 19 19 C 1.47846 * 119.99306 * 179.97438 * 17 16 15 20 20 C 1.39594 * 120.14659 * 0.02562 * 19 17 16 21 21 C 1.37935 * 119.85045 * 179.97438 * 20 19 17 22 22 C 1.38384 * 120.14793 * 359.97438 * 21 20 19 23 23 C 1.38338 * 120.29138 * 359.97438 * 22 21 20 24 24 C 1.50703 * 119.92688 * 180.02562 * 23 22 21 25 25 F 1.39901 * 109.47234 * 30.00120 * 24 23 22 26 26 F 1.39904 * 109.46948 * 149.99924 * 24 23 22 27 27 C 1.37978 * 120.14229 * 359.79092 * 23 22 21 28 28 C 1.47153 * 120.98270 * 26.22426 * 9 7 2 29 29 H 0.97001 * 119.99834 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.68593 * 350.24087 * 10 9 7 31 31 H 1.09001 * 109.68196 * 110.75433 * 10 9 7 32 32 H 1.08996 * 109.50795 * 67.62119 * 11 10 9 33 33 H 1.08998 * 109.51200 * 187.77529 * 11 10 9 34 34 H 1.08999 * 109.47113 * 59.89669 * 15 13 12 35 35 H 1.09004 * 109.47081 * 179.89570 * 15 13 12 36 36 H 0.96996 * 119.99846 * 359.97438 * 16 15 13 37 37 H 1.07993 * 120.07618 * 0.02562 * 20 19 17 38 38 H 1.07998 * 119.92837 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.85612 * 180.02562 * 22 21 20 40 40 H 1.08994 * 109.47084 * 270.00012 * 24 23 22 41 41 H 1.08003 * 120.07287 * 180.22925 * 27 23 22 42 42 H 1.09005 * 109.67992 * 9.76513 * 28 9 7 43 43 H 1.08995 * 109.71779 * 249.22614 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2222 0.2726 9 7 1.3700 -2.3625 -0.3438 10 6 1.8339 -3.6632 0.1644 11 6 1.9810 -4.6217 -1.0230 12 8 0.7653 -4.6310 -1.7750 13 6 0.4241 -3.3682 -2.3519 14 1 1.2368 -3.0301 -2.9947 15 6 -0.8550 -3.5130 -3.1788 16 7 -0.6379 -4.4922 -4.2467 17 6 -1.6342 -4.7835 -5.1064 18 8 -2.7127 -4.2343 -4.9956 19 6 -1.4149 -5.7713 -6.1844 20 6 -0.1775 -6.4044 -6.3141 21 6 0.0203 -7.3253 -7.3218 22 6 -1.0048 -7.6226 -8.2026 23 6 -2.2338 -6.9997 -8.0789 24 6 -3.3445 -7.3301 -9.0423 25 9 -3.2062 -8.6523 -9.4779 26 9 -4.5787 -7.1769 -8.4014 27 6 -2.4462 -6.0801 -7.0724 28 6 0.1972 -2.3456 -1.2325 29 1 -0.4850 0.8401 -0.0004 30 1 2.7973 -3.5415 0.6595 31 1 1.1060 -4.0622 0.8709 32 1 2.8000 -4.2885 -1.6604 33 1 2.1898 -5.6266 -0.6560 34 1 -1.6672 -3.8512 -2.5354 35 1 -1.1155 -2.5494 -3.6168 36 1 0.2229 -4.9303 -4.3353 37 1 0.6229 -6.1742 -5.6267 38 1 0.9769 -7.8161 -7.4230 39 1 -0.8450 -8.3448 -8.9896 40 1 -3.2942 -6.6582 -9.8991 41 1 -3.4073 -5.5971 -6.9746 42 1 0.0769 -1.3513 -1.6626 43 1 -0.6961 -2.6119 -0.6677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035579613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -130.066189 kcal Electronic energy + Delta-G solvation = -28843.207578 eV Core-core repulsion = 24331.851521 eV Total energy + Delta-G solvation = -4511.356056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -49.36648 -47.37960 -40.38763 -38.88633 -38.23654 -34.94857 -34.39296 -32.71716 -31.65729 -31.34200 -30.71236 -27.50305 -26.57545 -25.79830 -23.81356 -23.28315 -22.34746 -21.71045 -20.51534 -19.68620 -18.51851 -17.85550 -17.53884 -17.04854 -16.54744 -16.36536 -16.09899 -15.89465 -15.27166 -14.86825 -14.76648 -14.51647 -14.37185 -14.17424 -14.04355 -13.87656 -13.64605 -13.46699 -13.29330 -13.03285 -12.93474 -12.78408 -12.45551 -12.21903 -11.92729 -11.58936 -11.31943 -11.14302 -10.87545 -10.78566 -10.47355 -10.33320 -10.12451 -9.95036 -9.71100 -9.49370 -9.41841 -9.15048 -8.92901 -8.59450 -6.81208 -5.89136 -3.33121 0.42785 0.78198 2.62324 3.07086 3.31691 3.34338 3.38427 3.39053 3.51164 3.76894 4.12477 4.20036 4.39553 4.43617 4.50752 4.55953 4.69471 4.79915 5.07279 5.12232 5.23947 5.31055 5.48298 5.48958 5.55577 5.79405 5.84165 5.86961 5.87904 5.88535 5.96106 6.05906 6.17209 6.29851 6.32964 6.43811 6.56952 6.73061 7.01019 7.42258 7.52961 7.65778 7.77106 8.20262 8.28260 9.05837 9.68780 10.25653 11.19017 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021883 B = 0.002133 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.243688 B =13126.149213 C =13717.335538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.391 6.391 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.132 3.868 16 N -0.712 5.712 17 C 0.553 3.447 18 O -0.536 6.536 19 C -0.128 4.128 20 C -0.067 4.067 21 C -0.126 4.126 22 C -0.066 4.066 23 C -0.181 4.181 24 C 0.316 3.684 25 F -0.200 7.200 26 F -0.196 7.196 27 C -0.029 4.029 28 C 0.152 3.848 29 H 0.257 0.743 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.401 0.599 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.146 0.854 42 H 0.097 0.903 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 -15.625 -18.198 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.005 4.005 14 H 0.074 0.926 15 C 0.008 3.992 16 N -0.363 5.363 17 C 0.339 3.661 18 O -0.414 6.414 19 C -0.131 4.131 20 C -0.086 4.086 21 C -0.144 4.144 22 C -0.084 4.084 23 C -0.181 4.181 24 C 0.262 3.738 25 F -0.181 7.181 26 F -0.177 7.177 27 C -0.048 4.048 28 C 0.026 3.974 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.237 0.763 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.164 0.836 42 H 0.115 0.885 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.099 -15.225 -18.065 23.650 hybrid contribution 1.009 0.762 0.186 1.278 sum -0.090 -14.463 -17.878 22.996 Atomic orbital electron populations 1.70007 1.05252 1.25964 1.53319 1.25068 0.95366 0.98537 1.00602 0.86322 0.78895 0.83097 0.78170 1.20961 1.21476 1.20785 1.19138 0.92630 0.84464 1.42529 0.91372 1.44035 1.33716 1.01392 1.52640 1.21602 0.98664 0.87551 0.93959 1.23009 0.86108 0.99648 0.94017 1.87774 1.42298 1.31510 1.69441 1.23161 0.94917 0.86540 0.95880 0.92570 1.21487 0.97941 0.92278 0.87459 1.45890 1.15375 1.44039 1.30990 1.18149 0.84347 0.82009 0.81614 1.90793 1.24841 1.52575 1.73238 1.20018 0.94970 0.99974 0.98108 1.21550 0.96033 0.94088 0.96929 1.21114 0.99573 0.98520 0.95209 1.21124 0.91677 0.97112 0.98531 1.20380 0.96094 1.02008 0.99665 1.20282 0.79406 0.80872 0.93239 1.92997 1.95737 1.38916 1.90457 1.93029 1.45239 1.95525 1.83933 1.21045 0.99317 0.93685 0.90790 1.21308 0.89535 0.97580 0.89005 0.93286 0.91948 0.95521 0.93858 0.89976 0.90434 0.89692 0.76329 0.84802 0.84535 0.84665 0.85836 0.83622 0.88530 0.94983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 11.14 55.49 0.62 -24.94 16 2 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 3 Si 0.91 21.11 29.59 -169.99 -5.03 16.08 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.26 -6.88 9.65 -15.06 -0.15 -7.02 16 8 H 0.07 1.76 7.88 -52.48 -0.41 1.35 16 9 N -0.59 -14.50 3.05 -171.83 -0.52 -15.02 16 10 C 0.11 2.20 6.74 -3.53 -0.02 2.17 16 11 C 0.05 0.84 6.98 37.31 0.26 1.10 16 12 O -0.39 -6.95 10.14 -35.23 -0.36 -7.31 16 13 C 0.05 0.99 2.86 -26.58 -0.08 0.92 16 14 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.13 2.18 5.37 -4.04 -0.02 2.16 16 16 N -0.71 -9.90 5.40 -61.25 -0.33 -10.23 16 17 C 0.55 8.12 7.77 -12.33 -0.10 8.02 16 18 O -0.54 -9.81 16.35 5.33 0.09 -9.72 16 19 C -0.13 -1.47 5.87 -104.97 -0.62 -2.09 16 20 C -0.07 -0.59 9.54 -39.19 -0.37 -0.96 16 21 C -0.13 -0.90 10.03 -39.64 -0.40 -1.29 16 22 C -0.07 -0.48 9.39 -39.49 -0.37 -0.85 16 23 C -0.18 -1.58 5.73 -104.68 -0.60 -2.18 16 24 C 0.32 2.37 5.65 36.01 0.20 2.58 16 25 F -0.20 -1.70 16.47 2.25 0.04 -1.66 16 26 F -0.20 -1.97 16.47 2.25 0.04 -1.93 16 27 C -0.03 -0.32 8.94 -39.19 -0.35 -0.67 16 28 C 0.15 3.51 4.73 -3.53 -0.02 3.49 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.40 4.66 6.39 -40.82 -0.26 4.40 16 37 H 0.13 0.95 6.41 -52.49 -0.34 0.61 16 38 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.14 0.71 7.59 -52.49 -0.40 0.31 16 40 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.15 1.70 7.19 -52.48 -0.38 1.32 16 42 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -32.38 365.20 -8.13 -40.51 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.46 Total: 3.36 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -2.71 Total: 5.37 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.24 Total: -50.19 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.27 Total: -17.04 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.07 Total: -3.59 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.38 -8.13 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035579613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.556 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds