Wall clock time and date at job start Sat Apr 11 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00237 * 2 1 4 4 H 1.48499 * 109.47143 * 270.00796 * 3 2 1 5 5 H 1.48501 * 109.46861 * 30.00491 * 3 2 1 6 6 H 1.48493 * 109.47073 * 150.00145 * 3 2 1 7 7 C 1.38818 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99602 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.47206 * 125.89120 * 359.97438 * 9 7 2 11 11 C 1.54721 * 107.24417 * 183.75943 * 10 9 7 12 12 C 1.54204 * 102.06618 * 21.51491 * 11 10 9 13 13 H 1.08994 * 108.73498 * 78.17142 * 12 11 10 14 14 C 1.50940 * 112.77540 * 199.86882 * 12 11 10 15 15 N 1.46703 * 111.14498 * 70.07906 * 14 12 11 16 16 C 1.34772 * 121.36460 * 232.20490 * 15 14 12 17 17 O 1.21614 * 120.00364 * 183.71819 * 16 15 14 18 18 C 1.47387 * 119.99548 * 3.71366 * 16 15 14 19 19 C 1.36409 * 127.19277 * 318.67947 * 18 16 15 20 20 O 1.33657 * 108.39666 * 180.02562 * 19 18 16 21 21 C 1.34218 * 110.90438 * 0.02562 * 20 19 18 22 22 C 1.50704 * 125.43176 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47244 * 30.02799 * 22 21 20 24 24 F 1.39898 * 109.46555 * 150.02476 * 22 21 20 25 25 C 1.34168 * 109.12727 * 359.97438 * 21 20 19 26 26 C 1.47219 * 117.27979 * 52.47039 * 15 14 12 27 27 C 1.52208 * 107.66183 * 301.92069 * 26 15 14 28 28 C 1.48637 * 125.88743 * 180.02562 * 9 7 2 29 29 H 1.08999 * 112.00607 * 31.84153 * 28 9 7 30 30 H 0.97000 * 119.99975 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.88830 * 303.16483 * 10 9 7 32 32 H 1.08996 * 109.89080 * 64.18569 * 10 9 7 33 33 H 1.09007 * 110.91162 * 263.32476 * 11 10 9 34 34 H 1.08998 * 110.91825 * 139.71056 * 11 10 9 35 35 H 1.09002 * 109.14138 * 309.64821 * 14 12 11 36 36 H 1.08994 * 109.14082 * 190.51111 * 14 12 11 37 37 H 1.08003 * 125.80449 * 0.02562 * 19 18 16 38 38 H 1.08995 * 109.47044 * 270.02300 * 22 21 20 39 39 H 1.08000 * 127.02286 * 179.97438 * 25 21 20 40 40 H 1.09003 * 109.80303 * 61.20653 * 26 15 14 41 41 H 1.09005 * 109.80242 * 182.07819 * 26 15 14 42 42 H 1.09000 * 108.54009 * 297.34060 * 27 26 15 43 43 H 1.09001 * 109.31230 * 178.32721 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1388 -2.5391 0.0005 11 6 -0.4437 -4.0529 0.0970 12 6 0.8648 -4.6078 0.6950 13 1 0.8741 -4.4048 1.7658 14 6 1.0322 -6.0895 0.4607 15 7 1.2926 -6.3754 -0.9545 16 6 0.5588 -7.2786 -1.6342 17 8 0.8388 -7.5458 -2.7871 18 6 -0.5830 -7.9425 -0.9803 19 6 -0.6392 -8.4185 0.2968 20 8 -1.8502 -8.9476 0.4969 21 6 -2.6073 -8.8416 -0.6062 22 6 -4.0264 -9.3305 -0.7422 23 9 -4.6617 -9.2703 0.5028 24 9 -4.7123 -8.5225 -1.6553 25 6 -1.8992 -8.2311 -1.5684 26 6 2.3922 -5.6397 -1.6003 27 6 2.0933 -4.1531 -1.4684 28 6 1.9326 -3.7448 -0.0005 29 1 2.8831 -3.7669 0.5326 30 1 -0.4850 0.8400 0.0004 31 1 -0.5645 -2.0198 0.8591 32 1 -0.5542 -2.1328 -0.9216 33 1 -0.6304 -4.4759 -0.8902 34 1 -1.2857 -4.2386 0.7638 35 1 0.1223 -6.6050 0.7680 36 1 1.8675 -6.4538 1.0586 37 1 0.1592 -8.3753 1.0229 38 1 -4.0232 -10.3603 -1.0991 39 1 -2.2286 -7.9995 -2.5706 40 1 3.3335 -5.8694 -1.1010 41 1 2.4542 -5.9171 -2.6526 42 1 1.1690 -3.9365 -2.0042 43 1 2.9076 -3.5808 -1.9128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036801791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:48 Heat of formation + Delta-G solvation = -74.675327 kcal Electronic energy + Delta-G solvation = -30399.820061 eV Core-core repulsion = 25890.865932 eV Total energy + Delta-G solvation = -4508.954128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.46879 -47.49517 -42.99360 -40.17570 -38.20715 -35.26578 -33.46104 -32.51649 -32.22699 -30.97907 -29.45167 -28.29681 -26.40730 -25.54568 -24.05670 -23.28966 -22.15520 -21.48970 -20.18472 -20.00002 -18.85466 -18.13305 -17.80624 -17.51061 -17.02085 -16.70852 -16.41051 -16.06408 -15.69730 -15.10174 -14.78008 -14.47396 -14.33201 -13.97602 -13.85594 -13.82437 -13.51458 -13.22315 -13.16150 -13.07805 -12.80321 -12.66220 -12.02798 -11.91554 -11.75706 -11.64060 -11.36956 -11.07973 -10.84293 -10.72399 -10.23691 -10.12678 -10.03810 -9.96645 -9.76452 -9.70578 -9.61335 -9.13786 -8.65716 -8.51785 -6.87339 -5.72244 -3.06096 1.00798 1.58823 2.04806 2.71072 3.14913 3.38699 3.39228 3.43610 3.45642 3.67012 4.23712 4.27688 4.36074 4.46470 4.58248 4.76230 4.87673 5.16803 5.21521 5.26015 5.30979 5.42261 5.47709 5.55639 5.60735 5.73979 5.80034 5.81592 5.90394 5.99780 6.12382 6.32369 6.34268 6.47975 6.48529 6.58722 6.64214 6.87052 7.04473 7.43592 7.53935 7.60944 7.81332 8.14011 8.22555 9.19331 9.79334 10.46693 11.39027 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016283 B = 0.002996 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.134869 B = 9344.845673 C =10256.932312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.601 5.601 10 C 0.179 3.821 11 C -0.137 4.137 12 C -0.115 4.115 13 H 0.083 0.917 14 C 0.109 3.891 15 N -0.595 5.595 16 C 0.589 3.411 17 O -0.539 6.539 18 C -0.221 4.221 19 C 0.034 3.966 20 O -0.154 6.154 21 C -0.105 4.105 22 C 0.366 3.634 23 F -0.190 7.190 24 F -0.182 7.182 25 C -0.108 4.108 26 C 0.115 3.885 27 C -0.144 4.144 28 C 0.168 3.832 29 H 0.061 0.939 30 H 0.252 0.748 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.223 0.777 38 H 0.140 0.860 39 H 0.167 0.833 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 -21.439 1.594 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.325 5.325 10 C 0.054 3.946 11 C -0.175 4.175 12 C -0.135 4.135 13 H 0.101 0.899 14 C -0.014 4.014 15 N -0.328 5.328 16 C 0.377 3.623 17 O -0.417 6.417 18 C -0.225 4.225 19 C -0.037 4.037 20 O -0.050 6.050 21 C -0.155 4.155 22 C 0.312 3.688 23 F -0.171 7.171 24 F -0.163 7.163 25 C -0.128 4.128 26 C -0.007 4.007 27 C -0.185 4.185 28 C 0.060 3.940 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.239 0.761 38 H 0.156 0.844 39 H 0.185 0.815 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.695 -21.394 1.261 21.748 hybrid contribution 0.422 1.331 -0.080 1.398 sum -3.272 -20.064 1.181 20.363 Atomic orbital electron populations 1.69960 1.04883 1.25001 1.56989 1.24794 0.95680 0.97616 1.02322 0.86142 0.78560 0.83633 0.77552 1.21662 1.21734 1.20727 1.19037 0.90379 0.82369 1.43790 0.90486 1.44924 1.01413 0.99380 1.86781 1.21186 0.84285 0.88234 1.00851 1.22775 0.95498 0.99818 0.99413 1.21868 0.98236 0.92322 1.01094 0.89892 1.21469 1.01429 0.97467 0.81059 1.47977 1.33426 1.39359 1.11992 1.17138 0.80825 0.78951 0.85372 1.90786 1.69896 1.63971 1.17048 1.21485 0.96835 1.09127 0.95095 1.24769 0.86141 0.95963 0.96784 1.83737 1.22142 1.63280 1.35811 1.22555 0.95303 1.10343 0.87251 1.19526 0.79853 0.94695 0.74690 1.93060 1.83323 1.97412 1.43350 1.93082 1.79976 1.76751 1.66534 1.22529 0.91402 0.98306 1.00513 1.21653 0.87872 0.92326 0.98864 1.22426 1.02780 0.92693 1.00591 1.21145 0.94504 0.86089 0.92285 0.92118 0.93786 0.93115 0.94686 0.92741 0.92460 0.89983 0.91228 0.76061 0.84351 0.81531 0.91441 0.89443 0.91596 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.35 55.49 0.57 -26.30 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.13 10.31 -15.06 -0.16 -6.29 16 8 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.60 -14.56 2.90 -161.76 -0.47 -15.03 16 10 C 0.18 4.27 5.12 -2.75 -0.01 4.25 16 11 C -0.14 -2.49 5.89 -25.20 -0.15 -2.64 16 12 C -0.12 -1.81 2.89 -90.55 -0.26 -2.07 16 13 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 14 C 0.11 1.29 5.10 -4.97 -0.03 1.26 16 15 N -0.60 -8.18 2.80 -175.94 -0.49 -8.67 16 16 C 0.59 8.74 7.66 -12.54 -0.10 8.64 16 17 O -0.54 -9.77 16.60 5.26 0.09 -9.68 16 18 C -0.22 -2.70 5.61 -103.27 -0.58 -3.28 16 19 C 0.03 0.31 9.74 30.07 0.29 0.60 16 20 O -0.15 -1.54 10.50 7.63 0.08 -1.46 16 21 C -0.11 -1.04 6.90 -35.74 -0.25 -1.28 16 22 C 0.37 2.79 5.82 36.01 0.21 3.00 16 23 F -0.19 -1.82 17.30 2.25 0.04 -1.78 16 24 F -0.18 -1.71 17.01 2.25 0.04 -1.68 16 25 C -0.11 -1.23 10.68 -37.46 -0.40 -1.63 16 26 C 0.11 1.65 6.44 -4.05 -0.03 1.62 16 27 C -0.14 -2.52 5.20 -27.03 -0.14 -2.66 16 28 C 0.17 3.13 3.61 -66.17 -0.24 2.89 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.05 1.35 7.24 -51.93 -0.38 0.97 16 32 H 0.03 0.95 7.66 -51.93 -0.40 0.55 16 33 H 0.05 1.02 7.43 -51.93 -0.39 0.63 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.84 4.17 -51.93 -0.22 0.62 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.22 1.26 6.93 -52.48 -0.36 0.90 16 38 H 0.14 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.32 7.08 -51.93 -0.37 0.96 16 42 H 0.07 1.34 6.97 -51.93 -0.36 0.97 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -33.56 353.44 -7.16 -40.73 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.40 Total: -0.44 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.92 Total: 2.11 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.39 Total: -50.01 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.17 Total: -11.14 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.08 Total: -3.46 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.56 -7.16 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036801791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.950 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds