Wall clock time and date at job start Sat Apr 11 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99649 * 2 1 4 4 H 1.48500 * 109.47168 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47133 * 299.99522 * 3 2 1 6 6 H 1.48504 * 109.47255 * 59.99889 * 3 2 1 7 7 C 1.38811 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99979 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99737 * 0.02562 * 7 2 1 10 10 C 1.47559 * 125.67820 * 0.03903 * 9 7 2 11 11 C 1.55181 * 105.00890 * 203.83170 * 10 9 7 12 12 C 1.53659 * 101.41661 * 324.50139 * 11 10 9 13 13 C 1.53649 * 111.41458 * 155.02717 * 12 11 10 14 14 C 1.55440 * 101.31295 * 87.06647 * 13 12 11 15 15 N 1.47561 * 104.87658 * 35.82543 * 14 13 12 16 16 C 1.34783 * 125.66905 * 156.03371 * 15 14 13 17 17 O 1.21610 * 119.99468 * 185.25100 * 16 15 14 18 18 C 1.47376 * 120.00235 * 5.26024 * 16 15 14 19 19 C 1.36410 * 127.19351 * 186.68733 * 18 16 15 20 20 O 1.33653 * 108.39836 * 179.76825 * 19 18 16 21 21 C 1.34215 * 110.90740 * 0.44325 * 20 19 18 22 22 C 1.50701 * 125.43642 * 179.81307 * 21 20 19 23 23 F 1.39897 * 109.46941 * 29.69740 * 22 21 20 24 24 F 1.39901 * 109.46885 * 149.69484 * 22 21 20 25 25 C 1.34173 * 109.12106 * 359.55146 * 21 20 19 26 26 C 1.47398 * 108.65526 * 335.77238 * 15 14 13 27 27 C 1.47408 * 125.67157 * 179.97438 * 9 7 2 28 28 H 0.97002 * 120.00256 * 0.02562 * 1 2 3 29 29 H 1.09001 * 110.33418 * 322.71112 * 10 9 7 30 30 H 1.09001 * 110.33977 * 84.83830 * 10 9 7 31 31 H 1.09009 * 111.03542 * 206.46951 * 11 10 9 32 32 H 1.08996 * 111.03779 * 82.53726 * 11 10 9 33 33 H 1.09003 * 111.03718 * 205.29505 * 13 12 11 34 34 H 1.09002 * 111.03450 * 329.19086 * 13 12 11 35 35 H 1.09000 * 110.48386 * 276.93877 * 14 13 12 36 36 H 1.09000 * 110.30776 * 154.62251 * 14 13 12 37 37 H 1.08008 * 125.80300 * 0.05102 * 19 18 16 38 38 H 1.08996 * 109.47173 * 269.69125 * 22 21 20 39 39 H 1.08009 * 127.01984 * 180.26064 * 25 21 20 40 40 H 1.09003 * 109.98741 * 121.71927 * 26 15 14 41 41 H 1.08998 * 109.98569 * 242.98777 * 26 15 14 42 42 H 1.08994 * 109.98617 * 58.57142 * 27 9 7 43 43 H 1.08995 * 110.01787 * 297.27870 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1427 -2.5340 -0.0008 11 6 -0.4075 -3.9378 0.6053 12 6 0.7836 -4.7368 0.0539 13 6 1.1149 -5.9402 0.9500 14 6 0.1669 -7.0251 0.3664 15 7 0.1373 -6.7612 -1.0852 16 6 -0.1577 -7.6633 -2.0421 17 8 -0.0587 -7.3593 -3.2155 18 6 -0.6004 -9.0179 -1.6666 19 6 -0.8134 -10.0765 -2.5001 20 8 -1.2023 -11.1218 -1.7636 21 6 -1.2660 -10.7944 -0.4635 22 6 -1.6715 -11.7225 0.6524 23 9 -1.3263 -13.0357 0.3153 24 9 -1.0104 -11.3539 1.8289 25 6 -0.9055 -9.5105 -0.3154 26 6 0.4778 -5.3454 -1.3140 27 6 1.9330 -3.7312 0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6007 -1.7620 0.6175 30 1 -0.5278 -2.4806 -1.0191 31 1 -1.3524 -4.3467 0.2472 32 1 -0.3854 -3.9042 1.6946 33 1 2.1601 -6.2307 0.8443 34 1 0.8726 -5.7307 1.9919 35 1 -0.8326 -6.9260 0.7898 36 1 0.5651 -8.0206 0.5623 37 1 -0.6848 -10.0722 -3.5725 38 1 -2.7487 -11.6578 0.8055 39 1 -0.8506 -8.9528 0.6079 40 1 1.3538 -5.2724 -1.9585 41 1 -0.3656 -4.8288 -1.7722 42 1 2.5731 -3.8506 0.8746 43 1 2.5144 -3.8778 -0.9097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041604710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:28 Heat of formation + Delta-G solvation = -74.232726 kcal Electronic energy + Delta-G solvation = -29624.451275 eV Core-core repulsion = 25115.516339 eV Total energy + Delta-G solvation = -4508.934936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.60959 -47.63483 -43.08802 -40.26400 -38.36157 -35.77810 -33.66851 -32.59047 -31.59037 -30.58416 -29.20234 -28.43303 -26.49990 -26.06979 -24.52382 -23.03159 -22.46678 -21.55743 -20.32526 -19.83300 -18.90835 -18.26491 -17.87094 -17.69269 -16.87052 -16.59882 -16.54950 -16.43563 -15.79642 -15.35483 -14.85661 -14.47963 -14.31955 -14.11507 -13.96727 -13.82376 -13.70428 -13.46519 -13.10161 -13.07868 -12.81268 -12.41157 -12.10495 -12.03084 -11.94337 -11.76004 -11.34721 -11.20319 -10.94339 -10.81942 -10.31541 -10.29853 -10.14666 -10.02763 -9.92957 -9.77159 -9.52074 -9.36015 -8.67346 -8.59839 -6.85133 -5.66686 -3.08141 0.90212 1.35257 1.92869 2.88185 3.14920 3.23046 3.39243 3.44915 3.47278 3.51094 4.13648 4.20552 4.27443 4.47527 4.47696 4.58950 4.63421 4.84943 4.91611 5.07313 5.24639 5.32154 5.37234 5.41093 5.49356 5.64710 5.74782 5.86030 5.90538 5.97687 6.09315 6.18386 6.19852 6.30794 6.40729 6.51762 6.56915 6.71771 6.79488 7.47489 7.49328 7.61331 7.83503 8.07620 8.33828 9.20504 9.81142 10.45911 11.37471 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.002305 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.895138 B =12146.833234 C =12715.619739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.131 4.131 12 C -0.082 4.082 13 C -0.118 4.118 14 C 0.093 3.907 15 N -0.607 5.607 16 C 0.600 3.400 17 O -0.542 6.542 18 C -0.233 4.233 19 C 0.072 3.928 20 O -0.156 6.156 21 C -0.105 4.105 22 C 0.365 3.635 23 F -0.191 7.191 24 F -0.183 7.183 25 C -0.138 4.138 26 C 0.130 3.870 27 C 0.151 3.849 28 H 0.251 0.749 29 H 0.106 0.894 30 H 0.012 0.988 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.227 0.773 38 H 0.141 0.859 39 H 0.175 0.825 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 -24.513 2.688 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.169 4.169 12 C -0.083 4.083 13 C -0.156 4.156 14 C -0.030 4.030 15 N -0.340 5.340 16 C 0.389 3.611 17 O -0.421 6.421 18 C -0.238 4.238 19 C 0.001 3.999 20 O -0.051 6.051 21 C -0.155 4.155 22 C 0.311 3.689 23 F -0.172 7.172 24 F -0.164 7.164 25 C -0.158 4.158 26 C 0.008 3.992 27 C 0.025 3.975 28 H 0.062 0.938 29 H 0.124 0.876 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.244 0.756 38 H 0.158 0.842 39 H 0.192 0.808 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.240 -24.473 1.941 25.103 hybrid contribution 0.612 0.995 0.007 1.168 sum -4.627 -23.478 1.947 24.009 Atomic orbital electron populations 1.69807 1.04886 1.24661 1.57741 1.24785 0.95731 0.97724 1.02476 0.86002 0.78660 0.83627 0.77233 1.20537 1.21769 1.21764 1.19120 0.90535 0.82409 1.42879 0.90422 1.44634 1.01875 0.99629 1.86906 1.21992 0.84633 0.92339 0.98269 1.22918 0.95048 0.98825 1.00156 1.21550 0.98702 0.94687 0.93327 1.22727 0.99301 0.93906 0.99701 1.22813 1.00173 0.99640 0.80336 1.48440 1.67835 1.11003 1.06676 1.16727 0.77396 0.82531 0.84423 1.90823 1.54407 1.79454 1.17436 1.21466 1.12796 0.96329 0.93172 1.24624 0.94733 0.83052 0.97533 1.83769 1.67060 1.37685 1.16541 1.22627 1.12189 0.96418 0.84250 1.19553 0.96717 0.75087 0.77541 1.93058 1.94120 1.37607 1.92399 1.93077 1.84080 1.91402 1.47803 1.23213 1.00388 0.93594 0.98562 1.21909 1.01367 0.78588 0.97312 1.21089 0.92729 0.85429 0.98254 0.93790 0.87645 0.96991 0.92320 0.91632 0.90509 0.89411 0.90972 0.90325 0.75637 0.84236 0.80753 0.90937 0.90744 0.95194 0.95780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.65 10.09 55.49 0.56 -26.09 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.22 -6.09 10.28 -15.06 -0.15 -6.24 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 9 N -0.60 -15.11 3.41 -170.41 -0.58 -15.69 16 10 C 0.15 3.59 5.85 -2.31 -0.01 3.58 16 11 C -0.13 -2.31 5.85 -25.23 -0.15 -2.45 16 12 C -0.08 -1.32 0.61 -154.02 -0.09 -1.41 16 13 C -0.12 -1.44 5.94 -25.10 -0.15 -1.59 16 14 C 0.09 1.00 5.09 -2.17 -0.01 0.99 16 15 N -0.61 -8.53 3.34 -171.98 -0.57 -9.10 16 16 C 0.60 8.81 7.84 -12.54 -0.10 8.71 16 17 O -0.54 -9.77 17.27 5.27 0.09 -9.67 16 18 C -0.23 -2.63 6.20 -103.28 -0.64 -3.27 16 19 C 0.07 0.66 11.91 30.07 0.36 1.02 16 20 O -0.16 -1.41 10.50 7.65 0.08 -1.33 16 21 C -0.11 -0.87 6.90 -35.74 -0.25 -1.12 16 22 C 0.36 2.19 5.82 36.01 0.21 2.40 16 23 F -0.19 -1.54 17.30 2.25 0.04 -1.50 16 24 F -0.18 -1.33 17.01 2.25 0.04 -1.29 16 25 C -0.14 -1.24 8.81 -37.46 -0.33 -1.57 16 26 C 0.13 2.13 6.03 -3.65 -0.02 2.11 16 27 C 0.15 3.02 6.51 -3.64 -0.02 3.00 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.11 2.81 5.89 -51.93 -0.31 2.51 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.94 7.94 -51.92 -0.41 0.53 16 32 H 0.07 1.11 7.82 -51.93 -0.41 0.70 16 33 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 34 H 0.09 0.97 7.78 -51.93 -0.40 0.56 16 35 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 36 H 0.08 0.71 5.90 -51.93 -0.31 0.40 16 37 H 0.23 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.14 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.18 1.29 5.22 -52.48 -0.27 1.02 16 40 H 0.07 1.27 7.44 -51.93 -0.39 0.89 16 41 H 0.07 1.34 7.78 -51.93 -0.40 0.94 16 42 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 43 H 0.02 0.50 7.41 -51.93 -0.38 0.11 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -33.42 356.29 -6.79 -40.21 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.33 Total: -1.59 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.46 Total: 3.73 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.60 Total: -50.88 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.17 Total: -11.00 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.42 -6.79 -40.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041604710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.022 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds