Wall clock time and date at job start Sat Apr 11 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99649 * 2 1 4 4 H 1.48500 * 109.47168 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47133 * 299.99522 * 3 2 1 6 6 H 1.48504 * 109.47255 * 59.99889 * 3 2 1 7 7 C 1.38811 * 120.00372 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99979 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99737 * 0.02562 * 7 2 1 10 10 C 1.47559 * 125.67820 * 0.03903 * 9 7 2 11 11 C 1.55181 * 105.00890 * 203.83170 * 10 9 7 12 12 C 1.53659 * 101.41661 * 324.50139 * 11 10 9 13 13 C 1.53649 * 111.41458 * 155.02717 * 12 11 10 14 14 C 1.55440 * 101.31295 * 87.06647 * 13 12 11 15 15 N 1.47561 * 104.87658 * 35.82543 * 14 13 12 16 16 C 1.34783 * 125.66905 * 156.03371 * 15 14 13 17 17 O 1.21610 * 119.99468 * 185.25100 * 16 15 14 18 18 C 1.47376 * 120.00235 * 5.26024 * 16 15 14 19 19 C 1.36410 * 127.19351 * 186.68733 * 18 16 15 20 20 O 1.33653 * 108.39836 * 179.76825 * 19 18 16 21 21 C 1.34215 * 110.90740 * 0.44325 * 20 19 18 22 22 C 1.50701 * 125.43642 * 179.81307 * 21 20 19 23 23 F 1.39897 * 109.46941 * 29.69740 * 22 21 20 24 24 F 1.39901 * 109.46885 * 149.69484 * 22 21 20 25 25 C 1.34173 * 109.12106 * 359.55146 * 21 20 19 26 26 C 1.47398 * 108.65526 * 335.77238 * 15 14 13 27 27 C 1.47408 * 125.67157 * 179.97438 * 9 7 2 28 28 H 0.97002 * 120.00256 * 0.02562 * 1 2 3 29 29 H 1.09001 * 110.33418 * 322.71112 * 10 9 7 30 30 H 1.09001 * 110.33977 * 84.83830 * 10 9 7 31 31 H 1.09009 * 111.03542 * 206.46951 * 11 10 9 32 32 H 1.08996 * 111.03779 * 82.53726 * 11 10 9 33 33 H 1.09003 * 111.03718 * 205.29505 * 13 12 11 34 34 H 1.09002 * 111.03450 * 329.19086 * 13 12 11 35 35 H 1.09000 * 110.48386 * 276.93877 * 14 13 12 36 36 H 1.09000 * 110.30776 * 154.62251 * 14 13 12 37 37 H 1.08008 * 125.80300 * 0.05102 * 19 18 16 38 38 H 1.08996 * 109.47173 * 269.69125 * 22 21 20 39 39 H 1.08009 * 127.01984 * 180.26064 * 25 21 20 40 40 H 1.09003 * 109.98741 * 121.71927 * 26 15 14 41 41 H 1.08998 * 109.98569 * 242.98777 * 26 15 14 42 42 H 1.08994 * 109.98617 * 58.57142 * 27 9 7 43 43 H 1.08995 * 110.01787 * 297.27870 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1427 -2.5340 -0.0008 11 6 -0.4075 -3.9378 0.6053 12 6 0.7836 -4.7368 0.0539 13 6 1.1149 -5.9402 0.9500 14 6 0.1669 -7.0251 0.3664 15 7 0.1373 -6.7612 -1.0852 16 6 -0.1577 -7.6633 -2.0421 17 8 -0.0587 -7.3593 -3.2155 18 6 -0.6004 -9.0179 -1.6666 19 6 -0.8134 -10.0765 -2.5001 20 8 -1.2023 -11.1218 -1.7636 21 6 -1.2660 -10.7944 -0.4635 22 6 -1.6715 -11.7225 0.6524 23 9 -1.3263 -13.0357 0.3153 24 9 -1.0104 -11.3539 1.8289 25 6 -0.9055 -9.5105 -0.3154 26 6 0.4778 -5.3454 -1.3140 27 6 1.9330 -3.7312 0.0005 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6007 -1.7620 0.6175 30 1 -0.5278 -2.4806 -1.0191 31 1 -1.3524 -4.3467 0.2472 32 1 -0.3854 -3.9042 1.6946 33 1 2.1601 -6.2307 0.8443 34 1 0.8726 -5.7307 1.9919 35 1 -0.8326 -6.9260 0.7898 36 1 0.5651 -8.0206 0.5623 37 1 -0.6848 -10.0722 -3.5725 38 1 -2.7487 -11.6578 0.8055 39 1 -0.8506 -8.9528 0.6079 40 1 1.3538 -5.2724 -1.9585 41 1 -0.3656 -4.8288 -1.7722 42 1 2.5731 -3.8506 0.8746 43 1 2.5144 -3.8778 -0.9097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041604710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:28 Heat of formation + Delta-G solvation = -95.241007 kcal Electronic energy + Delta-G solvation = -29625.362262 eV Core-core repulsion = 25115.516339 eV Total energy + Delta-G solvation = -4509.845923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.09310 -48.13136 -43.78894 -41.48516 -39.68578 -37.27225 -34.78712 -34.02840 -32.35744 -31.99382 -30.71707 -29.87347 -27.63195 -27.03588 -26.08214 -24.26421 -23.41801 -22.41535 -22.11318 -20.57985 -20.23502 -19.02060 -18.72367 -18.56956 -18.23479 -17.55729 -17.26591 -17.21137 -16.85436 -16.80903 -16.39914 -15.84634 -15.60506 -15.10970 -14.97397 -14.72729 -14.51649 -14.41846 -14.22316 -14.01296 -13.77915 -13.74979 -13.59680 -13.43135 -13.14519 -12.92042 -12.85280 -12.65827 -12.51317 -12.37541 -11.98723 -11.82150 -11.56232 -11.47265 -11.26886 -11.17852 -11.01480 -10.74419 -10.09457 -9.71190 -8.88461 -7.77486 -5.21417 0.15827 0.62251 1.32693 1.46384 1.47269 1.57463 1.82819 2.13654 2.49408 2.68273 3.09379 3.27003 3.36682 3.50785 3.62926 3.65042 3.69725 3.78794 3.83498 3.87056 3.94858 4.17858 4.27146 4.36250 4.42768 4.56121 4.62366 4.70868 4.73285 4.74708 4.87454 4.93028 4.98772 5.00491 5.05415 5.19679 5.27355 5.34866 5.47315 5.63832 5.70846 5.82781 6.31162 6.40790 6.96523 7.11126 7.78208 8.42127 9.24633 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026816 B = 0.002305 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.895138 B =12146.833234 C =12715.619739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.289 1.289 7 C -0.236 4.236 8 H 0.080 0.920 9 N -0.626 5.626 10 C 0.154 3.846 11 C -0.110 4.110 12 C -0.071 4.071 13 C -0.109 4.109 14 C 0.094 3.906 15 N -0.607 5.607 16 C 0.596 3.404 17 O -0.589 6.589 18 C -0.260 4.260 19 C 0.085 3.915 20 O -0.158 6.158 21 C -0.105 4.105 22 C 0.365 3.635 23 F -0.204 7.204 24 F -0.189 7.189 25 C -0.138 4.138 26 C 0.135 3.865 27 C 0.147 3.853 28 H 0.246 0.754 29 H 0.072 0.928 30 H -0.023 1.023 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.245 0.755 38 H 0.187 0.813 39 H 0.193 0.807 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 -27.019 4.629 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.216 1.216 7 C -0.365 4.365 8 H 0.098 0.902 9 N -0.352 5.352 10 C 0.029 3.971 11 C -0.148 4.148 12 C -0.072 4.072 13 C -0.147 4.147 14 C -0.027 4.027 15 N -0.339 5.339 16 C 0.388 3.612 17 O -0.472 6.472 18 C -0.264 4.264 19 C 0.014 3.986 20 O -0.052 6.052 21 C -0.154 4.154 22 C 0.312 3.688 23 F -0.185 7.185 24 F -0.170 7.170 25 C -0.157 4.157 26 C 0.013 3.987 27 C 0.022 3.978 28 H 0.056 0.944 29 H 0.090 0.910 30 H -0.005 1.005 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.261 0.739 38 H 0.203 0.797 39 H 0.210 0.790 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -5.309 -27.029 3.923 27.823 hybrid contribution 0.662 1.739 -0.665 1.976 sum -4.647 -25.290 3.259 25.919 Atomic orbital electron populations 1.70064 1.06182 1.24878 1.58804 1.25617 0.96637 1.00941 1.02893 0.84997 0.78111 0.79460 0.76689 1.19137 1.22298 1.21565 1.19487 0.91012 0.83810 1.42175 0.90173 1.44949 1.02695 1.00861 1.86743 1.21773 0.83990 0.95261 0.96081 1.22723 0.96486 0.94916 1.00714 1.21381 0.96402 0.95243 0.94191 1.22754 1.00308 0.91664 0.99948 1.23075 1.01301 1.00459 0.77904 1.48475 1.67443 1.09644 1.08315 1.17228 0.76535 0.83649 0.83811 1.90790 1.56475 1.80523 1.19365 1.21251 1.15134 0.94949 0.95098 1.24996 0.92867 0.82521 0.98251 1.83806 1.66788 1.37478 1.17142 1.23104 1.11260 0.96729 0.84285 1.20084 0.98674 0.73751 0.76319 1.93034 1.94392 1.38572 1.92499 1.93065 1.84517 1.91380 1.48025 1.23322 1.00370 0.93934 0.98038 1.21611 0.99566 0.80439 0.97122 1.21277 0.94178 0.84229 0.98165 0.94404 0.90966 1.00507 0.90500 0.89926 0.89684 0.87083 0.88721 0.87711 0.73926 0.79664 0.78995 0.92946 0.93192 0.93850 0.96703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.89 10.09 21.65 0.22 -56.67 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 3 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.24 -13.26 10.28 84.03 0.86 -12.39 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.63 -32.06 3.41 -693.06 -2.36 -34.43 16 10 C 0.15 7.52 5.85 86.92 0.51 8.03 16 11 C -0.11 -3.76 5.85 31.56 0.18 -3.58 16 12 C -0.07 -2.22 0.61 -51.86 -0.03 -2.25 16 13 C -0.11 -2.26 5.94 31.65 0.19 -2.07 16 14 C 0.09 1.68 5.09 87.02 0.44 2.12 16 15 N -0.61 -16.29 3.34 -816.26 -2.73 -19.01 16 16 C 0.60 17.17 7.84 86.65 0.68 17.85 16 17 O -0.59 -21.76 17.27 -4.06 -0.07 -21.83 16 18 C -0.26 -5.37 6.20 -18.99 -0.12 -5.49 16 19 C 0.09 1.41 11.91 67.39 0.80 2.22 16 20 O -0.16 -2.45 10.50 4.46 0.05 -2.40 16 21 C -0.10 -1.38 6.90 24.76 0.17 -1.21 16 22 C 0.36 3.04 5.82 71.24 0.41 3.45 16 23 F -0.20 -2.71 17.30 44.97 0.78 -1.93 16 24 F -0.19 -2.06 17.01 44.97 0.76 -1.30 16 25 C -0.14 -2.02 8.81 23.65 0.21 -1.81 16 26 C 0.14 4.50 6.03 86.15 0.52 5.01 16 27 C 0.15 5.85 6.51 86.14 0.56 6.41 16 28 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.07 4.02 5.89 -2.39 -0.01 4.01 16 30 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 31 H 0.08 2.36 7.94 -2.38 -0.02 2.34 16 32 H 0.08 2.58 7.82 -2.39 -0.02 2.56 16 33 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 34 H 0.11 1.88 7.78 -2.39 -0.02 1.87 16 35 H 0.09 1.35 7.79 -2.39 -0.02 1.33 16 36 H 0.10 1.41 5.90 -2.39 -0.01 1.39 16 37 H 0.24 2.90 8.06 -2.91 -0.02 2.88 16 38 H 0.19 -0.11 8.14 -2.39 -0.02 -0.12 16 39 H 0.19 1.98 5.22 -2.91 -0.02 1.96 16 40 H 0.05 1.93 7.44 -2.39 -0.02 1.91 16 41 H 0.05 1.88 7.78 -2.39 -0.02 1.87 16 42 H 0.04 1.63 7.86 -2.39 -0.02 1.61 16 43 H 0.02 0.62 7.41 -2.39 -0.02 0.61 16 Total: -1.00 -76.96 356.29 5.59 -71.37 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 1.05 Total: 5.33 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 5.86 Total: 12.85 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -4.87 Total: -110.11 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.02 Total: -24.23 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 1.54 Total: -3.23 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -76.96 5.59 -71.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041604710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.870 kcal (2) G-P(sol) polarization free energy of solvation -76.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds