Wall clock time and date at job start Sat Apr 11 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00123 * 2 1 4 4 H 1.48501 * 109.47402 * 240.00172 * 3 2 1 5 5 H 1.48502 * 109.46991 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47188 * 119.99823 * 3 2 1 7 7 C 1.38816 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00072 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99868 * 0.02562 * 7 2 1 10 10 C 1.47134 * 125.60931 * 359.97402 * 9 7 2 11 11 C 1.54581 * 107.33297 * 179.10553 * 10 9 7 12 12 C 1.53713 * 102.77980 * 339.11863 * 11 10 9 13 13 C 1.52884 * 111.74870 * 273.38767 * 12 11 10 14 14 C 1.54754 * 104.51866 * 238.20511 * 13 12 11 15 15 N 1.48473 * 104.57138 * 336.47825 * 14 13 12 16 16 C 1.34776 * 127.63538 * 218.63290 * 15 14 13 17 17 O 1.21614 * 119.99770 * 173.64125 * 16 15 14 18 18 C 1.47377 * 120.00182 * 353.64304 * 16 15 14 19 19 C 1.36420 * 127.19427 * 172.04851 * 18 16 15 20 20 O 1.33650 * 108.39551 * 179.83659 * 19 18 16 21 21 C 1.34221 * 110.90828 * 0.45166 * 20 19 18 22 22 C 1.50709 * 125.43427 * 179.72200 * 21 20 19 23 23 F 1.39897 * 109.47070 * 30.00368 * 22 21 20 24 24 F 1.39892 * 109.46579 * 150.00073 * 22 21 20 25 25 C 1.34171 * 109.12311 * 359.72495 * 21 20 19 26 26 C 1.48492 * 104.64573 * 38.56541 * 15 14 13 27 27 C 1.47706 * 125.60584 * 180.02562 * 9 7 2 28 28 H 0.96995 * 120.00116 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.87737 * 59.66266 * 10 9 7 30 30 H 1.09000 * 109.99110 * 298.60332 * 10 9 7 31 31 H 1.09004 * 110.75275 * 220.79981 * 11 10 9 32 32 H 1.08994 * 110.91300 * 97.51042 * 11 10 9 33 33 H 1.08999 * 110.44714 * 357.00131 * 13 12 11 34 34 H 1.09003 * 110.44551 * 119.41170 * 13 12 11 35 35 H 1.09010 * 110.39520 * 95.18580 * 14 13 12 36 36 H 1.09000 * 110.40132 * 217.59049 * 14 13 12 37 37 H 1.07995 * 125.79977 * 0.02562 * 19 18 16 38 38 H 1.08995 * 109.47033 * 270.00252 * 22 21 20 39 39 H 1.08007 * 127.01730 * 180.02562 * 25 21 20 40 40 H 1.08994 * 110.46831 * 203.14747 * 26 15 14 41 41 H 1.08992 * 110.46868 * 80.54315 * 26 15 14 42 42 H 1.08998 * 110.39292 * 83.75504 * 27 9 7 43 43 H 1.09000 * 110.39153 * 321.36453 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1388 -2.5318 -0.0017 11 6 -0.4529 -4.0452 -0.0261 12 6 0.8485 -4.6539 -0.5725 13 6 0.8650 -4.6771 -2.1011 14 6 1.0500 -6.1699 -2.4644 15 7 1.6900 -6.7695 -1.2664 16 6 2.6555 -7.7092 -1.2325 17 8 3.1640 -8.0206 -0.1726 18 6 3.0951 -8.3594 -2.4799 19 6 4.1504 -9.2091 -2.6395 20 8 4.2048 -9.5776 -3.9230 21 6 3.2251 -8.9940 -4.6309 22 6 2.9868 -9.1758 -6.1079 23 9 3.4115 -10.4513 -6.4951 24 9 1.6219 -9.0359 -6.3806 25 6 2.4918 -8.2228 -3.8137 26 6 1.0309 -6.1022 -0.1151 27 6 1.9356 -3.7333 -0.0017 28 1 -0.4850 0.8400 0.0004 29 1 -0.5582 -2.0520 -0.8860 30 1 -0.5575 -2.0810 0.8980 31 1 -1.2879 -4.2556 -0.6944 32 1 -0.6607 -4.4156 0.9777 33 1 -0.0786 -4.3027 -2.4978 34 1 1.6983 -4.0864 -2.4819 35 1 0.0835 -6.6377 -2.6524 36 1 1.6980 -6.2716 -3.3350 37 1 4.8250 -9.5317 -1.8604 38 1 3.5471 -8.4226 -6.6617 39 1 1.6334 -7.6244 -4.0810 40 1 1.6693 -6.1459 0.7672 41 1 0.0641 -6.5621 0.0895 42 1 2.1928 -4.0337 1.0139 43 1 2.8197 -3.7493 -0.6390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041604719.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:32 Heat of formation + Delta-G solvation = -71.379324 kcal Electronic energy + Delta-G solvation = -29722.534705 eV Core-core repulsion = 25213.723502 eV Total energy + Delta-G solvation = -4508.811203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.58670 -47.61169 -43.06639 -40.15405 -38.33020 -35.75183 -33.64784 -32.54877 -31.57336 -30.32912 -29.34286 -28.47802 -26.47832 -25.98153 -24.53154 -22.97582 -22.58130 -21.49199 -20.24500 -19.80555 -18.91398 -18.24303 -17.81888 -17.68359 -16.85276 -16.63159 -16.57353 -16.39434 -15.60511 -15.39310 -14.68174 -14.45389 -14.30231 -14.13189 -13.95193 -13.85162 -13.69890 -13.37118 -13.24881 -13.07309 -12.70309 -12.67148 -12.05155 -11.97584 -11.90069 -11.47124 -11.30216 -11.02316 -10.88543 -10.77834 -10.31879 -10.21310 -10.13140 -10.00935 -9.92946 -9.77193 -9.64655 -9.33902 -8.68605 -8.59331 -6.82764 -5.71454 -3.04370 0.92301 1.36730 1.94862 2.84667 3.14398 3.26734 3.40020 3.44599 3.45514 3.53859 4.16172 4.22426 4.29261 4.48075 4.49893 4.64033 4.73633 4.90668 4.98515 5.06988 5.25794 5.37471 5.43032 5.46741 5.55940 5.65913 5.72163 5.82318 5.90999 5.95506 5.99903 6.21980 6.34773 6.39958 6.42763 6.50517 6.57594 6.74026 6.84942 7.50805 7.55367 7.61254 7.81941 8.07197 8.25490 9.22337 9.82212 10.48564 11.40202 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016730 B = 0.002541 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.237281 B =11018.105447 C =11430.892423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.132 4.132 12 C -0.086 4.086 13 C -0.110 4.110 14 C 0.088 3.912 15 N -0.612 5.612 16 C 0.608 3.392 17 O -0.544 6.544 18 C -0.233 4.233 19 C 0.072 3.928 20 O -0.155 6.155 21 C -0.104 4.104 22 C 0.365 3.635 23 F -0.191 7.191 24 F -0.183 7.183 25 C -0.139 4.139 26 C 0.123 3.877 27 C 0.152 3.848 28 H 0.252 0.748 29 H 0.046 0.954 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.227 0.773 38 H 0.141 0.859 39 H 0.176 0.824 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.019 0.981 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.010 -19.375 -11.845 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.170 4.170 12 C -0.088 4.088 13 C -0.148 4.148 14 C -0.035 4.035 15 N -0.344 5.344 16 C 0.398 3.602 17 O -0.424 6.424 18 C -0.237 4.237 19 C 0.001 3.999 20 O -0.050 6.050 21 C -0.154 4.154 22 C 0.311 3.689 23 F -0.172 7.172 24 F -0.164 7.164 25 C -0.158 4.158 26 C 0.001 3.999 27 C 0.026 3.974 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.244 0.756 38 H 0.158 0.842 39 H 0.193 0.807 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.037 0.963 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.467 -19.592 -11.444 22.953 hybrid contribution 0.171 1.002 0.120 1.024 sum 3.638 -18.590 -11.323 22.069 Atomic orbital electron populations 1.69944 1.04833 1.25083 1.57194 1.24776 0.95707 0.97575 1.02349 0.86213 0.78459 0.83281 0.77892 1.21222 1.21616 1.21219 1.19004 0.90379 0.82462 1.43693 0.90639 1.44549 1.01592 0.99728 1.87211 1.21177 0.84289 0.87935 1.01056 1.22814 0.94778 0.99700 0.99733 1.21629 0.98765 0.93195 0.95186 1.22337 1.03622 0.93728 0.95124 1.23012 0.97491 0.94417 0.88551 1.48886 1.37193 1.38730 1.09640 1.16647 0.78323 0.78364 0.86907 1.90814 1.55851 1.64474 1.31214 1.21451 1.01257 1.06560 0.94457 1.24621 0.97849 0.94567 0.82886 1.83769 1.44910 1.56865 1.19500 1.22626 0.94711 1.03111 0.94926 1.19560 0.78454 0.83917 0.86990 1.93056 1.89590 1.42666 1.91879 1.93073 1.33552 1.95881 1.93861 1.23194 1.01218 1.00471 0.90908 1.22282 0.96966 0.91140 0.89533 1.21406 0.93473 0.85781 0.96767 0.93751 0.93586 0.93995 0.91840 0.92202 0.89979 0.90308 0.90892 0.89795 0.75637 0.84184 0.80675 0.89584 0.90882 0.96317 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.70 10.31 55.49 0.57 -26.13 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.23 -6.28 10.28 -15.06 -0.15 -6.43 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -15.08 3.41 -170.50 -0.58 -15.66 16 10 C 0.18 4.19 5.33 -2.87 -0.02 4.18 16 11 C -0.13 -2.27 5.76 -25.53 -0.15 -2.41 16 12 C -0.09 -1.40 0.81 -153.97 -0.12 -1.52 16 13 C -0.11 -1.55 6.27 -25.87 -0.16 -1.71 16 14 C 0.09 0.98 5.75 -2.03 -0.01 0.96 16 15 N -0.61 -8.36 3.33 -170.66 -0.57 -8.93 16 16 C 0.61 8.80 7.89 -12.54 -0.10 8.70 16 17 O -0.54 -9.53 17.19 5.27 0.09 -9.44 16 18 C -0.23 -2.66 6.21 -103.28 -0.64 -3.30 16 19 C 0.07 0.68 11.91 30.08 0.36 1.04 16 20 O -0.16 -1.45 10.50 7.64 0.08 -1.37 16 21 C -0.10 -0.90 6.90 -35.74 -0.25 -1.15 16 22 C 0.36 2.35 5.82 36.01 0.21 2.55 16 23 F -0.19 -1.60 17.30 2.25 0.04 -1.56 16 24 F -0.18 -1.40 17.01 2.25 0.04 -1.37 16 25 C -0.14 -1.30 8.86 -37.46 -0.33 -1.63 16 26 C 0.12 1.78 6.21 -2.95 -0.02 1.76 16 27 C 0.15 3.12 6.12 -3.14 -0.02 3.10 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.05 1.18 7.39 -51.93 -0.38 0.79 16 30 H 0.04 1.10 7.49 -51.93 -0.39 0.71 16 31 H 0.06 0.96 7.71 -51.93 -0.40 0.56 16 32 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 33 H 0.08 1.12 7.51 -51.93 -0.39 0.73 16 34 H 0.08 1.25 7.54 -51.93 -0.39 0.85 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.08 0.80 4.95 -51.93 -0.26 0.54 16 37 H 0.23 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.14 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.18 1.37 5.41 -52.48 -0.28 1.08 16 40 H 0.09 1.37 7.32 -51.93 -0.38 0.99 16 41 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 42 H 0.02 0.40 7.74 -51.93 -0.40 0.00 16 43 H 0.04 0.77 7.74 -51.93 -0.40 0.37 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -33.52 356.79 -6.80 -40.32 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.32 Total: -2.03 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.50 Total: 3.82 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.58 Total: -50.72 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.17 Total: -10.82 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.08 Total: -2.92 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.52 -6.80 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041604719.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.055 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds