Wall clock time and date at job start Sat Apr 11 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48501 * 109.47306 * 269.99626 * 3 2 1 5 5 H 1.48503 * 109.47245 * 29.99794 * 3 2 1 6 6 H 1.48499 * 109.47366 * 149.99902 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00117 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00208 * 0.02562 * 7 2 1 10 10 C 1.46887 * 125.57880 * 0.03756 * 9 7 2 11 11 C 1.54063 * 107.70613 * 176.99587 * 10 9 7 12 12 C 1.54064 * 103.73955 * 342.86824 * 11 10 9 13 13 H 1.09000 * 109.16386 * 273.54667 * 12 11 10 14 14 C 1.47653 * 125.58483 * 180.02562 * 9 7 2 15 15 H 1.09003 * 110.56077 * 321.68279 * 14 9 7 16 16 C 1.52923 * 107.99557 * 82.70175 * 14 9 7 17 17 C 1.53269 * 109.61230 * 170.88753 * 16 14 9 18 18 C 1.53050 * 109.31256 * 295.36753 * 17 16 14 19 19 N 1.44192 * 111.76963 * 153.26183 * 12 11 10 20 20 C 1.34774 * 117.75836 * 93.51210 * 19 12 11 21 21 O 1.21617 * 119.99479 * 173.72913 * 20 19 12 22 22 C 1.47379 * 120.00256 * 353.72801 * 20 19 12 23 23 C 1.36415 * 127.19237 * 350.85507 * 22 20 19 24 24 O 1.33654 * 108.39631 * 179.83579 * 23 22 20 25 25 C 1.34214 * 110.90930 * 0.44842 * 24 23 22 26 26 C 1.50695 * 125.44168 * 179.72525 * 25 24 23 27 27 F 1.39907 * 109.46760 * 30.00188 * 26 25 24 28 28 F 1.39898 * 109.47498 * 150.00206 * 26 25 24 29 29 C 1.34182 * 109.12309 * 359.72745 * 25 24 23 30 30 H 0.97004 * 119.99983 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.81393 * 296.54697 * 10 9 7 32 32 H 1.09005 * 109.80849 * 57.44728 * 10 9 7 33 33 H 1.08996 * 110.57079 * 101.43340 * 11 10 9 34 34 H 1.09001 * 110.56913 * 224.15547 * 11 10 9 35 35 H 1.09003 * 109.41614 * 291.94440 * 16 14 9 36 36 H 1.09003 * 109.41476 * 51.74456 * 16 14 9 37 37 H 1.09007 * 109.50496 * 175.24568 * 17 16 14 38 38 H 1.09003 * 109.11028 * 55.25386 * 17 16 14 39 39 H 1.08999 * 109.45608 * 293.43137 * 18 17 16 40 40 H 1.09002 * 109.44331 * 173.47641 * 18 17 16 41 41 H 1.08003 * 125.79977 * 0.02562 * 23 22 20 42 42 H 1.08993 * 109.47081 * 270.00225 * 26 25 24 43 43 H 1.07999 * 127.02143 * 180.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1364 -2.5309 -0.0008 11 6 -0.4602 -4.0352 -0.0772 12 6 0.8593 -4.6696 -0.5569 13 1 0.8928 -4.6452 -1.6461 14 6 1.9358 -3.7326 0.0016 15 1 2.8237 -3.7505 -0.6305 16 6 2.2982 -4.0858 1.4447 17 6 2.7234 -5.5562 1.5232 18 6 1.5314 -6.4475 1.1668 19 7 0.9840 -6.0384 -0.1210 20 6 0.5647 -7.0053 -0.9611 21 8 0.7545 -8.1745 -0.6855 22 6 -0.1236 -6.6458 -2.2137 23 6 -0.5647 -5.4100 -2.5869 24 8 -1.1303 -5.5106 -3.7936 25 6 -1.0910 -6.7768 -4.2370 26 6 -1.6405 -7.2587 -5.5548 27 9 -1.5657 -6.2268 -6.4965 28 9 -0.8907 -8.3524 -6.0009 29 6 -0.4842 -7.5452 -3.3194 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5495 -2.1102 0.9159 32 1 -0.5569 -2.0181 -0.8659 33 1 -0.7343 -4.4183 0.9057 34 1 -1.2594 -4.2189 -0.7952 35 1 3.1080 -3.4396 1.7835 36 1 1.4272 -3.9387 2.0834 37 1 3.0615 -5.7838 2.5342 38 1 3.5355 -5.7311 0.8174 39 1 0.7639 -6.3516 1.9347 40 1 1.8590 -7.4855 1.1086 41 1 -0.4699 -4.5037 -2.0071 42 1 -2.6803 -7.5591 -5.4268 43 1 -0.2983 -8.6073 -3.3808 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049672049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:50 Heat of formation + Delta-G solvation = -53.821910 kcal Electronic energy + Delta-G solvation = -30787.463545 eV Core-core repulsion = 26279.413688 eV Total energy + Delta-G solvation = -4508.049856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.37998 -47.40329 -42.90496 -40.50514 -38.14904 -35.18240 -34.02175 -32.87294 -32.23760 -31.06193 -29.33429 -28.52813 -26.35087 -25.36443 -24.53202 -23.09512 -21.93986 -21.37776 -20.80918 -20.01853 -18.95584 -18.02479 -17.74387 -17.53057 -17.29875 -16.68958 -16.20929 -16.03252 -15.45914 -14.95635 -14.81175 -14.41772 -14.24702 -13.97867 -13.86568 -13.75491 -13.54533 -13.44855 -13.15798 -12.97534 -12.70734 -12.58729 -12.20237 -12.12978 -11.74396 -11.35260 -11.21202 -11.04579 -10.88525 -10.78705 -10.58227 -10.26820 -10.15724 -10.11434 -10.01150 -9.78464 -9.75211 -8.96462 -8.73492 -8.47774 -7.02461 -5.85034 -3.20154 1.14425 1.60538 2.24776 2.94716 3.27543 3.33162 3.39019 3.40336 3.51935 3.80402 4.32750 4.37696 4.41217 4.47818 4.71053 4.79919 4.92284 5.02970 5.16465 5.20900 5.31079 5.31376 5.40527 5.41348 5.53781 5.64222 5.72711 5.87618 5.94898 6.00381 6.02239 6.07190 6.20994 6.26609 6.38575 6.63179 6.66509 6.76331 6.88513 7.36211 7.39779 7.41953 7.66504 8.08852 8.20165 9.06865 9.66262 10.28719 11.26214 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.003756 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.008618 B = 7452.757355 C = 9315.349079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.003 4.003 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.595 5.595 10 C 0.176 3.824 11 C -0.176 4.176 12 C 0.104 3.896 13 H 0.097 0.903 14 C 0.163 3.837 15 H 0.058 0.942 16 C -0.129 4.129 17 C -0.132 4.132 18 C 0.117 3.883 19 N -0.581 5.581 20 C 0.583 3.417 21 O -0.544 6.544 22 C -0.243 4.243 23 C 0.024 3.976 24 O -0.152 6.152 25 C -0.114 4.114 26 C 0.366 3.634 27 F -0.190 7.190 28 F -0.185 7.185 29 C -0.105 4.105 30 H 0.254 0.746 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.257 0.743 42 H 0.139 0.861 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 -13.812 -4.792 15.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.200 4.200 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.320 5.320 10 C 0.051 3.949 11 C -0.215 4.215 12 C -0.001 4.001 13 H 0.114 0.886 14 C 0.054 3.946 15 H 0.076 0.924 16 C -0.169 4.169 17 C -0.171 4.171 18 C -0.005 4.005 19 N -0.312 5.312 20 C 0.373 3.627 21 O -0.423 6.423 22 C -0.248 4.248 23 C -0.046 4.046 24 O -0.047 6.047 25 C -0.164 4.164 26 C 0.312 3.688 27 F -0.171 7.171 28 F -0.166 7.166 29 C -0.125 4.125 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.272 0.728 42 H 0.156 0.844 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.411 -13.914 -4.830 15.119 hybrid contribution 0.585 0.901 0.155 1.086 sum -2.826 -13.013 -4.675 14.113 Atomic orbital electron populations 1.69924 1.04892 1.25325 1.56632 1.24784 0.95717 0.97693 1.01773 0.86112 0.78614 0.83319 0.77656 1.21489 1.21639 1.20657 1.19010 0.90499 0.81927 1.44417 0.90248 1.44503 1.01219 0.99268 1.87038 1.21135 0.84713 0.87004 1.02048 1.23438 0.95858 1.00616 1.01587 1.21928 0.97876 0.80705 0.99556 0.88599 1.20875 0.93660 0.85673 0.94359 0.92378 1.22150 1.01796 0.93596 0.99401 1.21897 0.97240 0.96413 1.01571 1.21363 0.95898 0.99787 0.83421 1.46904 1.61233 1.05841 1.17215 1.17304 0.78109 0.85213 0.82094 1.90742 1.57402 1.18287 1.75859 1.21497 1.10772 0.93781 0.98715 1.27161 0.92610 1.01293 0.83496 1.83857 1.62186 1.27798 1.30850 1.22603 1.10653 0.84078 0.99039 1.19519 0.95364 0.74791 0.79105 1.93064 1.97415 1.59661 1.66966 1.93059 1.79901 1.54087 1.89589 1.22498 0.98003 1.00806 0.91224 0.93562 0.93510 0.92531 0.90756 0.91153 0.91395 0.91987 0.90966 0.91786 0.91925 0.89124 0.72823 0.84393 0.81551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.05 10.29 55.49 0.57 -24.48 16 2 C 0.00 -0.08 5.49 -17.43 -0.10 -0.17 16 3 Si 0.91 20.93 29.55 -169.99 -5.02 15.91 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.23 -5.85 10.27 -15.06 -0.15 -6.01 16 8 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.60 -13.36 2.94 -163.73 -0.48 -13.84 16 10 C 0.18 3.73 5.39 -3.28 -0.02 3.71 16 11 C -0.18 -2.83 5.67 -25.62 -0.15 -2.97 16 12 C 0.10 1.64 2.19 -68.47 -0.15 1.49 16 13 H 0.10 1.50 4.37 -51.93 -0.23 1.27 16 14 C 0.16 2.96 3.24 -67.21 -0.22 2.74 16 15 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.13 -2.12 5.40 -26.63 -0.14 -2.26 16 17 C -0.13 -1.75 6.06 -26.57 -0.16 -1.91 16 18 C 0.12 1.61 6.33 -4.40 -0.03 1.58 16 19 N -0.58 -8.75 2.80 -168.79 -0.47 -9.23 16 20 C 0.58 9.37 7.57 -12.54 -0.09 9.27 16 21 O -0.54 -9.91 16.20 5.26 0.09 -9.83 16 22 C -0.24 -3.54 6.04 -103.28 -0.62 -4.17 16 23 C 0.02 0.33 8.99 30.08 0.27 0.60 16 24 O -0.15 -2.06 10.50 7.65 0.08 -1.98 16 25 C -0.11 -1.36 6.90 -35.74 -0.25 -1.61 16 26 C 0.37 3.30 5.82 36.00 0.21 3.51 16 27 F -0.19 -2.13 17.30 2.25 0.04 -2.09 16 28 F -0.19 -1.85 17.01 2.25 0.04 -1.81 16 29 C -0.11 -1.35 10.55 -37.45 -0.40 -1.75 16 30 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 31 H 0.05 1.12 7.60 -51.93 -0.39 0.73 16 32 H 0.06 1.32 7.25 -51.93 -0.38 0.95 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 0.99 5.71 -51.93 -0.30 0.69 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.26 6.90 -51.93 -0.36 0.90 16 41 H 0.26 3.53 2.75 -52.48 -0.14 3.38 16 42 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.17 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 347.68 15.07 5.24 5.24 Total: -1.00 -29.78 347.68 -7.06 -36.85 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.14 Total: 3.19 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.99 Total: 2.06 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.38 Total: -47.54 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.17 Total: -11.80 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.08 Total: -3.90 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.78 -7.06 -36.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049672049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.974 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds