Wall clock time and date at job start Sat Apr 11 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99726 * 2 1 4 4 H 1.48504 * 109.47116 * 274.97626 * 3 2 1 5 5 H 1.48499 * 109.47191 * 34.97676 * 3 2 1 6 6 H 1.48497 * 109.47417 * 154.97630 * 3 2 1 7 7 C 1.38810 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00081 * 171.22845 * 7 2 1 9 9 N 1.36932 * 119.99860 * 351.22477 * 7 2 1 10 10 C 1.47117 * 125.77014 * 3.96650 * 9 7 2 11 11 C 1.54566 * 107.25494 * 182.61287 * 10 9 7 12 12 C 1.54410 * 102.44941 * 21.67513 * 11 10 9 13 13 H 1.09000 * 110.72011 * 80.55570 * 12 11 10 14 14 C 1.48214 * 125.76538 * 183.99133 * 9 7 2 15 15 H 1.08997 * 112.30834 * 33.43118 * 14 9 7 16 16 C 1.53012 * 107.11376 * 270.83726 * 14 9 7 17 17 C 1.52737 * 110.80370 * 191.92990 * 16 14 9 18 18 C 1.53460 * 108.43884 * 63.77131 * 17 16 14 19 19 N 1.45116 * 111.61104 * 203.41597 * 12 11 10 20 20 C 1.34770 * 119.58196 * 248.62496 * 19 12 11 21 21 O 1.21694 * 119.99912 * 352.27613 * 20 19 12 22 22 C 1.46660 * 120.00319 * 172.27103 * 20 19 12 23 23 C 1.36538 * 125.98677 * 172.40179 * 22 20 19 24 24 C 1.40371 * 106.70534 * 179.85146 * 23 22 20 25 25 C 1.35122 * 107.11385 * 0.41038 * 24 23 22 26 26 C 1.50701 * 125.61710 * 179.77558 * 25 24 23 27 27 F 1.39900 * 109.47639 * 299.98815 * 26 25 24 28 28 F 1.39910 * 109.46854 * 59.98490 * 26 25 24 29 29 O 1.33925 * 108.77022 * 359.74638 * 25 24 23 30 30 H 0.97000 * 120.00398 * 0.02562 * 1 2 3 31 31 H 1.09012 * 109.88375 * 63.20033 * 10 9 7 32 32 H 1.09002 * 109.88900 * 302.02871 * 10 9 7 33 33 H 1.09004 * 110.81096 * 263.43192 * 11 10 9 34 34 H 1.09003 * 110.97960 * 139.99762 * 11 10 9 35 35 H 1.09004 * 109.21359 * 312.27312 * 16 14 9 36 36 H 1.08998 * 109.21004 * 71.58922 * 16 14 9 37 37 H 1.08998 * 109.64046 * 304.08712 * 17 16 14 38 38 H 1.09001 * 109.81601 * 183.55846 * 17 16 14 39 39 H 1.09006 * 109.83210 * 182.40093 * 18 17 16 40 40 H 1.08998 * 109.89275 * 61.47358 * 18 17 16 41 41 H 1.07999 * 126.65044 * 359.96306 * 23 22 20 42 42 H 1.08003 * 126.44290 * 180.15190 * 24 23 22 43 43 H 1.09006 * 109.47468 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5041 2.6200 0.8026 6 1 3.5963 1.4123 0.5922 7 6 2.0103 -1.2021 -0.0005 8 1 3.0808 -1.2075 -0.1432 9 7 1.3377 -2.3811 0.1799 10 6 -0.1208 -2.5290 0.3026 11 6 -0.4100 -4.0257 0.5584 12 6 0.9384 -4.5354 1.1118 13 1 1.0382 -4.2911 2.1694 14 6 1.9562 -3.7240 0.2849 15 1 2.9311 -3.6935 0.7713 16 6 2.0583 -4.2850 -1.1350 17 6 2.4081 -5.7715 -1.1070 18 6 1.2582 -6.5280 -0.4285 19 7 1.0898 -5.9654 0.9170 20 6 1.0761 -6.7875 1.9849 21 8 1.0791 -6.3236 3.1099 22 6 1.0575 -8.2411 1.7911 23 6 1.1885 -9.1829 2.7710 24 6 1.1090 -10.4346 2.1409 25 6 0.9443 -10.2049 0.8196 26 6 0.8154 -11.2629 -0.2458 27 9 1.9677 -12.0562 -0.2572 28 9 -0.2995 -12.0638 0.0248 29 8 0.9137 -8.8821 0.6127 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6048 -2.2103 -0.6207 32 1 -0.4849 -1.9328 1.1394 33 1 -0.6647 -4.5352 -0.3710 34 1 -1.2031 -4.1495 1.2958 35 1 1.1035 -4.1507 -1.6433 36 1 2.8327 -3.7445 -1.6793 37 1 3.3285 -5.9208 -0.5425 38 1 2.5387 -6.1396 -2.1247 39 1 1.5035 -7.5878 -0.3581 40 1 0.3399 -6.3983 -1.0012 41 1 1.3250 -9.0001 3.8267 42 1 1.1722 -11.3999 2.6213 43 1 0.6927 -10.7862 -1.2184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049869421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:57 Heat of formation + Delta-G solvation = -70.692972 kcal Electronic energy + Delta-G solvation = -30361.687240 eV Core-core repulsion = 25852.905799 eV Total energy + Delta-G solvation = -4508.781441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.58621 -47.59019 -43.22852 -40.30717 -38.10157 -35.47180 -33.65909 -32.54240 -32.37173 -31.43598 -29.14960 -28.40611 -26.99861 -24.84958 -24.36904 -22.81229 -22.10020 -21.93168 -20.68268 -20.10002 -18.85085 -18.12250 -17.97186 -17.71502 -17.46634 -16.95580 -16.64058 -16.01683 -14.92675 -14.80575 -14.57288 -14.42614 -14.40719 -14.18200 -13.94049 -13.87152 -13.59658 -13.55614 -13.37828 -13.20269 -12.98918 -12.56624 -12.11488 -12.02164 -11.80891 -11.42464 -11.05400 -11.02790 -10.89115 -10.68357 -10.61017 -10.42029 -10.35779 -10.12261 -9.93219 -9.69670 -9.68123 -9.23943 -8.62465 -8.43421 -6.91224 -5.76837 -3.09033 0.55067 1.77229 1.82888 2.86702 2.99500 3.37957 3.39128 3.44626 3.46329 3.62821 4.04060 4.32791 4.37994 4.45186 4.45786 4.88449 5.06111 5.14424 5.16056 5.22591 5.29661 5.36843 5.47493 5.52979 5.54746 5.76910 5.77467 5.86934 5.91407 6.03671 6.11402 6.24229 6.24632 6.32884 6.42325 6.51024 6.64075 6.84640 6.98668 7.34587 7.50263 7.55660 7.77298 7.97511 8.18659 9.15722 9.75883 10.41418 11.35123 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.002620 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.506115 B =10683.317841 C =11008.630145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.597 5.597 10 C 0.180 3.820 11 C -0.151 4.151 12 C 0.128 3.872 13 H 0.106 0.894 14 C 0.157 3.843 15 H 0.062 0.938 16 C -0.131 4.131 17 C -0.132 4.132 18 C 0.095 3.905 19 N -0.578 5.578 20 C 0.592 3.408 21 O -0.515 6.515 22 C -0.032 4.032 23 C -0.131 4.131 24 C -0.154 4.154 25 C -0.096 4.096 26 C 0.360 3.640 27 F -0.184 7.184 28 F -0.184 7.184 29 O -0.138 6.138 30 H 0.253 0.747 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.169 0.831 42 H 0.162 0.838 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -23.208 -1.562 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.321 5.321 10 C 0.055 3.945 11 C -0.190 4.190 12 C 0.024 3.976 13 H 0.124 0.876 14 C 0.048 3.952 15 H 0.080 0.920 16 C -0.171 4.171 17 C -0.170 4.170 18 C -0.026 4.026 19 N -0.309 5.309 20 C 0.378 3.622 21 O -0.392 6.392 22 C -0.085 4.085 23 C -0.151 4.151 24 C -0.174 4.174 25 C -0.147 4.147 26 C 0.306 3.694 27 F -0.165 7.165 28 F -0.165 7.165 29 O -0.035 6.035 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.186 0.814 42 H 0.180 0.820 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.014 -22.532 -1.271 22.591 hybrid contribution 0.393 0.630 0.061 0.745 sum 1.407 -21.902 -1.210 21.981 Atomic orbital electron populations 1.69967 1.04934 1.25185 1.56414 1.24804 0.95667 0.97638 1.02033 0.86148 0.78807 0.83658 0.77436 1.21713 1.21609 1.20610 1.19013 0.91458 0.82404 1.42832 0.90363 1.44687 1.01760 1.00459 1.85226 1.21184 0.84509 0.87900 1.00867 1.23138 0.95815 1.00103 0.99993 1.21955 0.97134 0.76426 1.02079 0.87601 1.21335 0.94896 0.86309 0.92627 0.91996 1.22150 1.02174 0.92757 1.00051 1.21927 0.97596 0.97323 1.00202 1.22292 0.99682 0.98042 0.82620 1.47591 1.69379 1.07577 1.06315 1.16750 0.77980 0.82193 0.85292 1.90900 1.50963 1.74366 1.23007 1.22519 1.09227 0.93713 0.83044 1.22017 1.01655 0.90373 1.01103 1.21691 1.03294 1.00028 0.92360 1.22982 1.11184 0.83916 0.96664 1.19101 0.72258 0.80975 0.97057 1.93078 1.50228 1.75723 1.97441 1.93081 1.52543 1.75313 1.95538 1.84254 1.70128 1.16506 1.32599 0.93681 0.93745 0.93124 0.92095 0.91871 0.91721 0.91925 0.91751 0.91035 0.88595 0.90791 0.81395 0.82027 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.41 10.40 55.49 0.58 -25.83 16 2 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 3 Si 0.91 21.78 29.56 -169.99 -5.03 16.75 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.23 -6.17 10.28 -15.06 -0.15 -6.33 16 8 H 0.08 2.05 7.84 -52.49 -0.41 1.63 16 9 N -0.60 -14.54 2.91 -162.19 -0.47 -15.01 16 10 C 0.18 4.24 5.19 -2.88 -0.01 4.22 16 11 C -0.15 -2.81 6.08 -25.17 -0.15 -2.96 16 12 C 0.13 2.32 3.13 -67.30 -0.21 2.11 16 13 H 0.11 2.16 6.93 -51.93 -0.36 1.80 16 14 C 0.16 3.09 3.60 -66.35 -0.24 2.86 16 15 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 16 C -0.13 -2.20 5.10 -26.86 -0.14 -2.34 16 17 C -0.13 -1.66 6.11 -26.63 -0.16 -1.83 16 18 C 0.10 1.17 5.76 -3.64 -0.02 1.14 16 19 N -0.58 -8.79 2.73 -166.56 -0.46 -9.24 16 20 C 0.59 9.17 7.60 -12.86 -0.10 9.08 16 21 O -0.51 -9.53 16.20 5.19 0.08 -9.44 16 22 C -0.03 -0.41 6.73 -36.80 -0.25 -0.65 16 23 C -0.13 -1.42 10.63 -39.39 -0.42 -1.84 16 24 C -0.15 -1.41 10.77 -39.89 -0.43 -1.84 16 25 C -0.10 -0.86 6.75 -35.42 -0.24 -1.10 16 26 C 0.36 2.39 5.76 36.01 0.21 2.60 16 27 F -0.18 -1.44 17.32 2.25 0.04 -1.40 16 28 F -0.18 -1.47 17.32 2.25 0.04 -1.43 16 29 O -0.14 -1.46 7.20 5.01 0.04 -1.42 16 30 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.04 1.15 7.61 -51.92 -0.39 0.75 16 32 H 0.05 1.34 7.33 -51.93 -0.38 0.95 16 33 H 0.06 1.04 6.81 -51.93 -0.35 0.69 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.16 7.12 -51.93 -0.37 0.79 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 1.02 4.22 -53.40 -0.23 0.79 16 40 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 41 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.16 1.11 8.06 -52.48 -0.42 0.68 16 43 H 0.13 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -30.96 352.60 -7.68 -38.64 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.40 Total: 0.17 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.41 Total: 2.90 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.35 Total: -50.08 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.12 Total: -10.86 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.08 Total: -2.83 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.96 -7.68 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049869421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.049 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds