Wall clock time and date at job start Sat Apr 11 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99726 * 2 1 4 4 H 1.48504 * 109.47116 * 274.97626 * 3 2 1 5 5 H 1.48499 * 109.47191 * 34.97676 * 3 2 1 6 6 H 1.48497 * 109.47417 * 154.97630 * 3 2 1 7 7 C 1.38810 * 120.00276 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00081 * 171.22845 * 7 2 1 9 9 N 1.36932 * 119.99860 * 351.22477 * 7 2 1 10 10 C 1.47117 * 125.77014 * 3.96650 * 9 7 2 11 11 C 1.54566 * 107.25494 * 182.61287 * 10 9 7 12 12 C 1.54410 * 102.44941 * 21.67513 * 11 10 9 13 13 H 1.09000 * 110.72011 * 80.55570 * 12 11 10 14 14 C 1.48214 * 125.76538 * 183.99133 * 9 7 2 15 15 H 1.08997 * 112.30834 * 33.43118 * 14 9 7 16 16 C 1.53012 * 107.11376 * 270.83726 * 14 9 7 17 17 C 1.52737 * 110.80370 * 191.92990 * 16 14 9 18 18 C 1.53460 * 108.43884 * 63.77131 * 17 16 14 19 19 N 1.45116 * 111.61104 * 203.41597 * 12 11 10 20 20 C 1.34770 * 119.58196 * 248.62496 * 19 12 11 21 21 O 1.21694 * 119.99912 * 352.27613 * 20 19 12 22 22 C 1.46660 * 120.00319 * 172.27103 * 20 19 12 23 23 C 1.36538 * 125.98677 * 172.40179 * 22 20 19 24 24 C 1.40371 * 106.70534 * 179.85146 * 23 22 20 25 25 C 1.35122 * 107.11385 * 0.41038 * 24 23 22 26 26 C 1.50701 * 125.61710 * 179.77558 * 25 24 23 27 27 F 1.39900 * 109.47639 * 299.98815 * 26 25 24 28 28 F 1.39910 * 109.46854 * 59.98490 * 26 25 24 29 29 O 1.33925 * 108.77022 * 359.74638 * 25 24 23 30 30 H 0.97000 * 120.00398 * 0.02562 * 1 2 3 31 31 H 1.09012 * 109.88375 * 63.20033 * 10 9 7 32 32 H 1.09002 * 109.88900 * 302.02871 * 10 9 7 33 33 H 1.09004 * 110.81096 * 263.43192 * 11 10 9 34 34 H 1.09003 * 110.97960 * 139.99762 * 11 10 9 35 35 H 1.09004 * 109.21359 * 312.27312 * 16 14 9 36 36 H 1.08998 * 109.21004 * 71.58922 * 16 14 9 37 37 H 1.08998 * 109.64046 * 304.08712 * 17 16 14 38 38 H 1.09001 * 109.81601 * 183.55846 * 17 16 14 39 39 H 1.09006 * 109.83210 * 182.40093 * 18 17 16 40 40 H 1.08998 * 109.89275 * 61.47358 * 18 17 16 41 41 H 1.07999 * 126.65044 * 359.96306 * 23 22 20 42 42 H 1.08003 * 126.44290 * 180.15190 * 24 23 22 43 43 H 1.09006 * 109.47468 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5041 2.6200 0.8026 6 1 3.5963 1.4123 0.5922 7 6 2.0103 -1.2021 -0.0005 8 1 3.0808 -1.2075 -0.1432 9 7 1.3377 -2.3811 0.1799 10 6 -0.1208 -2.5290 0.3026 11 6 -0.4100 -4.0257 0.5584 12 6 0.9384 -4.5354 1.1118 13 1 1.0382 -4.2911 2.1694 14 6 1.9562 -3.7240 0.2849 15 1 2.9311 -3.6935 0.7713 16 6 2.0583 -4.2850 -1.1350 17 6 2.4081 -5.7715 -1.1070 18 6 1.2582 -6.5280 -0.4285 19 7 1.0898 -5.9654 0.9170 20 6 1.0761 -6.7875 1.9849 21 8 1.0791 -6.3236 3.1099 22 6 1.0575 -8.2411 1.7911 23 6 1.1885 -9.1829 2.7710 24 6 1.1090 -10.4346 2.1409 25 6 0.9443 -10.2049 0.8196 26 6 0.8154 -11.2629 -0.2458 27 9 1.9677 -12.0562 -0.2572 28 9 -0.2995 -12.0638 0.0248 29 8 0.9137 -8.8821 0.6127 30 1 -0.4851 0.8400 -0.0004 31 1 -0.6048 -2.2103 -0.6207 32 1 -0.4849 -1.9328 1.1394 33 1 -0.6647 -4.5352 -0.3710 34 1 -1.2031 -4.1495 1.2958 35 1 1.1035 -4.1507 -1.6433 36 1 2.8327 -3.7445 -1.6793 37 1 3.3285 -5.9208 -0.5425 38 1 2.5387 -6.1396 -2.1247 39 1 1.5035 -7.5878 -0.3581 40 1 0.3399 -6.3983 -1.0012 41 1 1.3250 -9.0001 3.8267 42 1 1.1722 -11.3999 2.6213 43 1 0.6927 -10.7862 -1.2184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049869421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:56 Heat of formation + Delta-G solvation = -88.421342 kcal Electronic energy + Delta-G solvation = -30362.455999 eV Core-core repulsion = 25852.905799 eV Total energy + Delta-G solvation = -4509.550200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.12623 -48.13708 -44.04452 -41.62733 -39.52944 -36.94492 -34.55085 -34.15151 -33.82473 -32.34640 -30.88576 -29.89852 -27.91543 -26.34524 -25.90967 -23.87434 -23.28069 -22.78176 -21.99372 -21.62411 -20.04592 -19.13212 -18.74664 -18.61364 -18.45478 -18.24983 -17.49271 -17.28296 -16.78713 -16.22179 -15.95311 -15.66979 -15.29484 -15.13974 -14.99623 -14.75337 -14.51193 -14.48891 -14.35146 -14.25039 -14.10825 -14.00557 -13.78621 -13.50108 -13.12909 -12.76559 -12.69238 -12.40622 -12.36387 -12.31320 -12.06969 -11.94179 -11.77193 -11.57817 -11.37235 -11.26470 -11.16274 -10.68137 -10.12814 -9.70500 -8.91051 -7.86852 -5.20231 -0.33327 0.95755 1.02927 1.45105 1.47480 1.56271 1.74158 1.90768 2.48851 2.72072 3.06528 3.30929 3.35053 3.52536 3.65888 3.68221 3.81536 3.86410 3.88290 3.98727 4.06700 4.07773 4.26733 4.36692 4.40199 4.51674 4.60776 4.64208 4.67150 4.76015 4.84343 4.96203 5.02511 5.09793 5.13276 5.29444 5.38083 5.47005 5.52933 5.57703 5.61748 5.72146 6.16181 6.18049 6.78387 7.07906 7.73933 8.39374 9.24068 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026800 B = 0.002620 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.506115 B =10683.317841 C =11008.630145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.271 1.271 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.617 5.617 10 C 0.192 3.808 11 C -0.133 4.133 12 C 0.143 3.857 13 H 0.078 0.922 14 C 0.151 3.849 15 H 0.052 0.948 16 C -0.120 4.120 17 C -0.121 4.121 18 C 0.094 3.906 19 N -0.579 5.579 20 C 0.593 3.407 21 O -0.556 6.556 22 C -0.059 4.059 23 C -0.121 4.121 24 C -0.162 4.162 25 C -0.082 4.082 26 C 0.363 3.637 27 F -0.189 7.189 28 F -0.191 7.191 29 O -0.135 6.135 30 H 0.247 0.753 31 H 0.015 0.985 32 H 0.010 0.990 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.172 0.828 42 H 0.185 0.815 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 -26.353 -2.959 26.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.366 4.366 8 H 0.100 0.900 9 N -0.342 5.342 10 C 0.066 3.934 11 C -0.172 4.172 12 C 0.038 3.962 13 H 0.096 0.904 14 C 0.044 3.956 15 H 0.070 0.930 16 C -0.160 4.160 17 C -0.159 4.159 18 C -0.026 4.026 19 N -0.309 5.309 20 C 0.381 3.619 21 O -0.437 6.437 22 C -0.111 4.111 23 C -0.142 4.142 24 C -0.181 4.181 25 C -0.134 4.134 26 C 0.309 3.691 27 F -0.170 7.170 28 F -0.172 7.172 29 O -0.032 6.032 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.029 0.971 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.125 0.875 39 H 0.138 0.862 40 H 0.105 0.895 41 H 0.190 0.810 42 H 0.202 0.798 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.845 -25.736 -2.693 25.942 hybrid contribution 0.177 1.471 0.525 1.572 sum 2.022 -24.265 -2.168 24.445 Atomic orbital electron populations 1.70170 1.06260 1.25302 1.57948 1.25598 0.96513 1.00803 1.02689 0.85138 0.77813 0.79545 0.77298 1.21245 1.22267 1.19542 1.19363 0.91859 0.83678 1.41653 0.90030 1.44923 1.02351 1.01718 1.85201 1.20859 0.84135 0.90648 0.97740 1.22941 0.96342 0.96601 1.01327 1.21432 0.96103 0.78582 1.00048 0.90393 1.21531 0.94493 0.84680 0.94867 0.92974 1.21928 1.01373 0.95782 0.96936 1.21882 0.97703 0.93868 1.02479 1.22553 1.00132 0.99129 0.80791 1.47559 1.69454 1.06026 1.07818 1.17036 0.76821 0.83453 0.84563 1.90873 1.52740 1.75563 1.24509 1.21846 1.12745 0.92230 0.84314 1.22248 0.99773 0.90910 1.01259 1.21995 1.03292 1.00253 0.92568 1.23563 1.08738 0.83612 0.97535 1.19501 0.71640 0.80150 0.97804 1.93073 1.50662 1.75856 1.97432 1.93074 1.52950 1.75485 1.95655 1.84160 1.70266 1.17153 1.31604 0.94384 0.96661 0.97133 0.89777 0.91089 0.92702 0.93021 0.91586 0.87474 0.86170 0.89532 0.81019 0.79800 0.80736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.94 10.40 21.65 0.23 -56.71 16 2 C -0.06 -3.57 5.47 84.86 0.46 -3.10 16 3 Si 0.97 45.88 29.56 68.60 2.03 47.90 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.24 -13.13 10.28 84.03 0.86 -12.27 16 8 H 0.08 4.34 7.84 -2.91 -0.02 4.32 16 9 N -0.62 -31.15 2.91 -667.04 -1.94 -33.10 16 10 C 0.19 9.45 5.19 86.79 0.45 9.90 16 11 C -0.13 -4.99 6.08 31.61 0.19 -4.79 16 12 C 0.14 5.28 3.13 46.14 0.14 5.42 16 13 H 0.08 3.32 6.93 -2.39 -0.02 3.30 16 14 C 0.15 6.05 3.60 45.08 0.16 6.22 16 15 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 16 C -0.12 -3.91 5.10 30.51 0.16 -3.75 16 17 C -0.12 -2.67 6.11 30.66 0.19 -2.48 16 18 C 0.09 2.00 5.76 86.48 0.50 2.50 16 19 N -0.58 -16.90 2.73 -799.09 -2.18 -19.08 16 20 C 0.59 17.94 7.60 86.44 0.66 18.60 16 21 O -0.56 -20.97 16.20 -4.33 -0.07 -21.04 16 22 C -0.06 -1.36 6.73 24.07 0.16 -1.20 16 23 C -0.12 -2.39 10.63 22.39 0.24 -2.15 16 24 C -0.16 -2.44 10.77 22.07 0.24 -2.20 16 25 C -0.08 -1.17 6.75 24.97 0.17 -1.00 16 26 C 0.36 3.25 5.76 71.24 0.41 3.66 16 27 F -0.19 -2.25 17.32 44.97 0.78 -1.47 16 28 F -0.19 -2.35 17.32 44.97 0.78 -1.57 16 29 O -0.14 -2.36 7.20 -5.00 -0.04 -2.40 16 30 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.02 0.83 7.61 -2.38 -0.02 0.81 16 32 H 0.01 0.59 7.33 -2.39 -0.02 0.57 16 33 H 0.08 2.76 6.81 -2.38 -0.02 2.75 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.05 1.90 7.12 -2.39 -0.02 1.88 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.12 2.04 4.22 -25.77 -0.11 1.93 16 40 H 0.09 1.68 7.53 -2.39 -0.02 1.66 16 41 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 42 H 0.18 1.87 8.06 -2.91 -0.02 1.84 16 43 H 0.18 0.23 8.14 -2.38 -0.02 0.21 16 Total: -1.00 -71.27 352.60 5.52 -65.75 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 0.95 Total: 8.37 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 4.99 Total: 13.33 kcal Atomic # 7 Polarization: -104.99 SS G_CDS: -3.90 Total: -108.89 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.11 Total: -23.44 kcal Atomic # 9 Polarization: -4.59 SS G_CDS: 1.56 Total: -3.04 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -71.27 5.52 -65.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049869421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.675 kcal (2) G-P(sol) polarization free energy of solvation -71.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds