Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99926 * 2 1 4 4 H 1.48501 * 109.47124 * 239.99792 * 3 2 1 5 5 H 1.48493 * 109.47570 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46880 * 120.00564 * 3 2 1 7 7 C 1.38811 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00016 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99876 * 359.97438 * 7 2 1 10 10 C 1.48375 * 126.56415 * 359.97438 * 9 7 2 11 11 C 1.55466 * 106.97649 * 185.54301 * 10 9 7 12 12 C 1.53432 * 101.67436 * 22.59515 * 11 10 9 13 13 H 1.09000 * 111.14466 * 78.82263 * 12 11 10 14 14 C 1.45424 * 126.02100 * 180.87344 * 9 7 2 15 15 H 1.09001 * 107.61334 * 264.00658 * 14 9 7 16 16 C 1.51093 * 120.14336 * 29.03124 * 14 9 7 17 17 C 1.53873 * 107.39844 * 184.07830 * 16 14 9 18 18 C 1.52715 * 111.52437 * 303.04099 * 17 16 14 19 19 N 1.45724 * 116.37116 * 207.28231 * 12 11 10 20 20 C 1.34774 * 122.23163 * 350.99634 * 19 12 11 21 21 O 1.21703 * 119.99818 * 354.39446 * 20 19 12 22 22 C 1.46654 * 120.00214 * 174.40125 * 20 19 12 23 23 C 1.36543 * 125.98847 * 185.57415 * 22 20 19 24 24 C 1.40361 * 106.71059 * 179.97438 * 23 22 20 25 25 C 1.35130 * 107.11112 * 359.97438 * 24 23 22 26 26 C 1.50709 * 125.61328 * 180.02562 * 25 24 23 27 27 F 1.39898 * 109.47175 * 300.00643 * 26 25 24 28 28 F 1.39896 * 109.47028 * 60.01033 * 26 25 24 29 29 O 1.33924 * 108.77016 * 359.77799 * 25 24 23 30 30 H 0.97009 * 120.00061 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.96290 * 66.16203 * 10 9 7 32 32 H 1.08998 * 109.99279 * 304.93962 * 10 9 7 33 33 H 1.09000 * 110.98615 * 264.49963 * 11 10 9 34 34 H 1.09003 * 110.99125 * 140.70011 * 11 10 9 35 35 H 1.08998 * 109.88140 * 64.58280 * 16 14 9 36 36 H 1.09000 * 109.88108 * 303.57319 * 16 14 9 37 37 H 1.09001 * 109.06846 * 63.56472 * 17 16 14 38 38 H 1.08997 * 109.06943 * 182.58120 * 17 16 14 39 39 H 1.08997 * 109.16364 * 168.93512 * 18 17 16 40 40 H 1.09006 * 109.15663 * 288.12337 * 18 17 16 41 41 H 1.08007 * 126.64438 * 359.97438 * 23 22 20 42 42 H 1.07997 * 126.44338 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.46606 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1486 -2.5576 0.0005 11 6 -0.4304 -4.0798 0.1437 12 6 0.8717 -4.5776 0.7849 13 1 0.8901 -4.3646 1.8537 14 6 1.9162 -3.7168 0.0169 15 1 1.9644 -4.0699 -1.0133 16 6 3.2602 -3.9410 0.6699 17 6 3.6485 -5.4106 0.4306 18 6 2.5852 -6.3658 0.9683 19 7 1.2346 -5.9640 0.5206 20 6 0.3952 -6.8226 -0.0915 21 8 -0.7430 -6.4793 -0.3519 22 6 0.8533 -8.1705 -0.4436 23 6 0.1476 -9.0972 -1.1561 24 6 0.9628 -10.2353 -1.2566 25 6 2.1160 -9.9568 -0.6098 26 6 3.2879 -10.8930 -0.4625 27 9 2.8793 -12.0492 0.2108 28 9 3.7717 -11.2373 -1.7292 29 8 2.0483 -8.7099 -0.1257 30 1 -0.4851 0.8401 0.0004 31 1 -0.5664 -2.1884 -0.9361 32 1 -0.5852 -2.0178 0.8408 33 1 -0.5866 -4.5413 -0.8314 34 1 -1.2822 -4.2593 0.7997 35 1 3.1896 -3.7458 1.7399 36 1 4.0046 -3.2831 0.2215 37 1 3.7685 -5.5775 -0.6399 38 1 4.5951 -5.6148 0.9309 39 1 2.7956 -7.3736 0.6102 40 1 2.6174 -6.3602 2.0578 41 1 -0.8456 -8.9775 -1.5634 42 1 0.7152 -11.1595 -1.7575 43 1 4.0766 -10.4009 0.1066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049869424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = -64.773272 kcal Electronic energy + Delta-G solvation = -30475.417038 eV Core-core repulsion = 25966.892295 eV Total energy + Delta-G solvation = -4508.524743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.57486 -47.57903 -43.17064 -40.27341 -37.87071 -35.57332 -33.65980 -32.72831 -32.33513 -31.38185 -29.08170 -28.34155 -26.98385 -24.79381 -24.48522 -22.62930 -22.00138 -21.50805 -21.02002 -19.91825 -19.49811 -18.28592 -17.94096 -17.70696 -17.15538 -16.56343 -16.50201 -15.73228 -15.10751 -14.78120 -14.73608 -14.47206 -14.41616 -14.02434 -13.92848 -13.84842 -13.58900 -13.49411 -13.39692 -13.32775 -12.84747 -12.54010 -12.31616 -11.92355 -11.79792 -11.59058 -11.11119 -10.88774 -10.75245 -10.66324 -10.53140 -10.46515 -10.15805 -10.10037 -9.91276 -9.67078 -9.42439 -9.16492 -8.62313 -8.38526 -6.86348 -5.72257 -3.06848 0.59845 1.80447 1.86185 2.86932 3.08602 3.39008 3.39550 3.43762 3.45292 3.63845 4.05131 4.32279 4.39423 4.47726 4.48637 4.80994 4.99907 5.12873 5.18158 5.27026 5.30241 5.37303 5.40934 5.55976 5.64828 5.77172 5.83464 5.90929 5.92128 5.98151 6.18529 6.21565 6.31487 6.35574 6.49397 6.63929 6.70206 6.80083 7.06521 7.41608 7.55456 7.61803 7.80280 8.05903 8.22317 9.16979 9.80392 10.47134 11.39647 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.002786 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.907179 B =10047.897761 C =10806.536541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.175 3.825 11 C -0.131 4.131 12 C 0.115 3.885 13 H 0.085 0.915 14 C 0.158 3.842 15 H 0.019 0.981 16 C -0.116 4.116 17 C -0.128 4.128 18 C 0.097 3.903 19 N -0.586 5.586 20 C 0.597 3.403 21 O -0.504 6.504 22 C -0.032 4.032 23 C -0.133 4.133 24 C -0.154 4.154 25 C -0.098 4.098 26 C 0.360 3.640 27 F -0.184 7.184 28 F -0.184 7.184 29 O -0.140 6.140 30 H 0.254 0.746 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.169 0.831 42 H 0.162 0.838 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 -22.293 1.223 23.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.358 4.358 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.050 3.950 11 C -0.169 4.169 12 C 0.012 3.988 13 H 0.103 0.897 14 C 0.049 3.951 15 H 0.036 0.964 16 C -0.154 4.154 17 C -0.167 4.167 18 C -0.025 4.025 19 N -0.317 5.317 20 C 0.383 3.617 21 O -0.381 6.381 22 C -0.084 4.084 23 C -0.153 4.153 24 C -0.173 4.173 25 C -0.150 4.150 26 C 0.306 3.694 27 F -0.165 7.165 28 F -0.165 7.165 29 O -0.037 6.037 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.186 0.814 42 H 0.179 0.821 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.161 -21.721 1.223 22.611 hybrid contribution 0.396 0.634 -0.138 0.760 sum 6.556 -21.087 1.084 22.109 Atomic orbital electron populations 1.69928 1.04899 1.25261 1.56598 1.24808 0.95675 0.97648 1.02128 0.86223 0.78483 0.83316 0.77858 1.21184 1.21598 1.21178 1.18955 0.90333 0.82245 1.44231 0.90377 1.44215 1.01664 0.99285 1.86563 1.21729 0.83491 0.88459 1.01293 1.22963 0.94586 0.98188 1.01198 1.22585 0.98998 0.77478 0.99774 0.89733 1.20861 0.91249 0.87258 0.95722 0.96385 1.21429 0.98538 0.94164 1.01318 1.21893 0.97534 0.95518 1.01722 1.22208 0.81313 0.99248 0.99725 1.47979 1.15180 1.11665 1.56901 1.16631 0.85088 0.81087 0.78912 1.90922 1.17597 1.74747 1.54872 1.22724 0.84517 0.96384 1.04819 1.22010 1.01757 0.91576 0.99949 1.21683 0.92984 1.00765 1.01857 1.22989 0.99457 0.87036 1.05503 1.19088 0.91134 0.80303 0.78832 1.93074 1.92078 1.51597 1.79777 1.93079 1.88115 1.92891 1.42376 1.84173 1.34335 1.23908 1.61299 0.93611 0.94030 0.92437 0.90332 0.91629 0.91634 0.91226 0.91732 0.90636 0.88492 0.91005 0.81388 0.82070 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.46 55.49 0.58 -26.31 16 2 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.23 9.95 -15.06 -0.15 -6.38 16 8 H 0.08 2.02 7.36 -52.49 -0.39 1.64 16 9 N -0.59 -14.88 3.36 -162.91 -0.55 -15.43 16 10 C 0.17 4.31 5.48 -1.70 -0.01 4.30 16 11 C -0.13 -2.69 4.98 -25.20 -0.13 -2.82 16 12 C 0.12 2.12 3.28 -66.73 -0.22 1.91 16 13 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 14 C 0.16 3.21 2.61 -68.07 -0.18 3.03 16 15 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 16 C -0.12 -1.90 5.50 -27.24 -0.15 -2.05 16 17 C -0.13 -1.56 5.93 -26.42 -0.16 -1.72 16 18 C 0.10 1.15 6.31 -3.44 -0.02 1.13 16 19 N -0.59 -9.07 2.91 -165.44 -0.48 -9.56 16 20 C 0.60 9.48 7.60 -12.87 -0.10 9.38 16 21 O -0.50 -9.36 13.82 5.19 0.07 -9.28 16 22 C -0.03 -0.41 6.89 -36.80 -0.25 -0.66 16 23 C -0.13 -1.50 10.63 -39.40 -0.42 -1.92 16 24 C -0.15 -1.46 10.77 -39.89 -0.43 -1.89 16 25 C -0.10 -0.92 6.75 -35.41 -0.24 -1.16 16 26 C 0.36 2.46 5.76 36.01 0.21 2.67 16 27 F -0.18 -1.47 17.32 2.25 0.04 -1.43 16 28 F -0.18 -1.51 17.32 2.25 0.04 -1.47 16 29 O -0.14 -1.51 7.17 5.02 0.04 -1.48 16 30 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.04 1.13 7.81 -51.93 -0.41 0.72 16 32 H 0.06 1.55 7.19 -51.93 -0.37 1.17 16 33 H 0.08 1.68 6.32 -51.93 -0.33 1.35 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 36 H 0.07 1.19 7.74 -51.93 -0.40 0.79 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.01 3.97 -54.05 -0.21 0.80 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.17 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 43 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -31.66 351.01 -7.80 -39.46 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.47 Total: -0.16 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.34 Total: 3.56 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.45 Total: -51.30 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.11 Total: -10.76 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.08 Total: -2.90 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.66 -7.80 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049869424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.313 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds