Wall clock time and date at job start Sat Apr 11 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86807 * 119.99338 * 2 1 4 4 H 1.48504 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47136 * 300.00401 * 3 2 1 6 6 H 1.48493 * 109.46902 * 60.00568 * 3 2 1 7 7 C 1.38791 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00028 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99856 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47254 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00180 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00247 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47345 * 179.97438 * 14 13 11 16 16 N 1.46905 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99870 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.46943 * 180.02562 * 17 16 15 19 19 N 1.31126 * 126.55345 * 89.71289 * 18 17 16 20 20 C 1.34496 * 105.61474 * 179.91639 * 19 18 17 21 21 C 1.50706 * 126.29005 * 180.12520 * 20 19 18 22 22 C 1.53781 * 113.61678 * 219.37519 * 21 20 19 23 23 C 1.53949 * 87.01917 * 220.04627 * 22 21 20 24 24 C 1.53775 * 113.61591 * 121.76642 * 21 20 19 25 25 N 1.29944 * 107.42615 * 0.34860 * 20 19 18 26 26 O 1.21302 * 110.24781 * 359.77670 * 25 20 19 27 27 H 0.96995 * 120.00491 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46873 * 60.00093 * 10 9 7 29 29 H 1.08998 * 109.47428 * 299.99755 * 10 9 7 30 30 H 0.97001 * 119.99992 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.46535 * 59.99860 * 14 13 11 32 32 H 1.08998 * 109.46918 * 300.00331 * 14 13 11 33 33 H 1.09001 * 109.47393 * 60.00416 * 15 14 13 34 34 H 1.08998 * 109.47408 * 300.00062 * 15 14 13 35 35 H 1.00901 * 110.99869 * 56.04956 * 16 15 14 36 36 H 1.09004 * 109.47031 * 299.99620 * 17 16 15 37 37 H 1.08995 * 109.47111 * 59.99900 * 17 16 15 38 38 H 1.08998 * 112.84773 * 350.57145 * 21 20 19 39 39 H 1.09005 * 113.61200 * 334.57043 * 22 21 20 40 40 H 1.09001 * 113.61409 * 105.46377 * 22 21 20 41 41 H 1.09002 * 113.53754 * 270.81236 * 23 22 21 42 42 H 1.09005 * 113.74038 * 139.94192 * 23 22 21 43 43 H 1.08998 * 113.61467 * 254.53554 * 24 21 20 44 44 H 1.09000 * 113.61420 * 25.43136 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7103 1.3467 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5162 -3.8912 -0.0021 11 6 1.9878 -5.3027 -0.0017 12 8 0.7915 -5.5023 -0.0009 13 7 2.8446 -6.3429 -0.0033 14 6 2.3311 -7.7150 -0.0034 15 6 3.5031 -8.6983 -0.0059 16 7 2.9881 -10.0741 -0.0067 17 6 4.0879 -11.0479 -0.0085 18 6 3.5221 -12.4447 -0.0099 19 7 3.2234 -13.1652 -1.0640 20 6 2.7559 -14.3316 -0.5845 21 6 2.2791 -15.5048 -1.4014 22 6 1.0385 -16.1997 -0.8158 23 6 1.6963 -17.5332 -1.2149 24 6 3.0478 -16.8061 -1.1178 25 7 2.7865 -14.2594 0.7126 26 8 3.2235 -13.1834 1.0630 27 1 -0.4850 0.8400 0.0004 28 1 3.1254 -3.7315 0.8875 29 1 3.1241 -3.7308 -0.8925 30 1 3.8014 -6.1832 -0.0043 31 1 1.7214 -7.8745 -0.8928 32 1 1.7234 -7.8756 0.8871 33 1 4.1131 -8.5389 0.8832 34 1 4.1104 -8.5376 -0.8967 35 1 2.3676 -10.2275 -0.7875 36 1 4.6998 -10.9033 -0.8990 37 1 4.7013 -10.9049 0.8810 38 1 2.1895 -15.2731 -2.4627 39 1 0.9330 -16.0699 0.2613 40 1 0.1195 -15.9847 -1.3610 41 1 1.4461 -17.8567 -2.2253 42 1 1.5712 -18.3232 -0.4743 43 1 3.7487 -17.0800 -1.9064 44 1 3.4928 -16.8425 -0.1234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123798963.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:28 Heat of formation + Delta-G solvation = 51.179044 kcal Electronic energy + Delta-G solvation = -24824.072092 eV Core-core repulsion = 20906.708556 eV Total energy + Delta-G solvation = -3917.363536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.99052 -39.40722 -39.25255 -37.46278 -35.93328 -34.56581 -32.76566 -32.43490 -30.33486 -28.50442 -27.40455 -26.23983 -25.92193 -25.41900 -23.79721 -22.54432 -22.20207 -20.41447 -19.77342 -18.48533 -18.26515 -17.84049 -16.67232 -16.32777 -16.24850 -16.11937 -15.85771 -15.34876 -15.16891 -14.81797 -14.73023 -14.05305 -13.82969 -13.51014 -13.38714 -13.16580 -13.09659 -13.04274 -12.74471 -12.55559 -12.26114 -11.99829 -11.88241 -11.56518 -11.52143 -11.49396 -11.07716 -11.07431 -11.02778 -11.01945 -10.76611 -10.29309 -9.81642 -9.45722 -9.19165 -9.08700 -8.94104 -8.24013 -6.50878 -6.22456 -3.93150 0.68040 1.73291 2.31816 2.91941 3.07387 3.10722 3.21104 3.26176 3.30720 3.50868 3.58581 3.96132 4.02837 4.06440 4.19509 4.21634 4.27698 4.43284 4.53503 4.67648 4.77102 4.83999 5.05639 5.08763 5.12896 5.15898 5.16839 5.18105 5.25831 5.34521 5.38064 5.48803 5.57224 5.58236 5.67559 5.78949 5.85532 5.87954 6.11972 6.17754 6.52338 6.63733 7.59028 7.64946 7.76406 8.34621 8.58007 9.23036 10.85047 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.042005 B = 0.001287 C = 0.001266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.419943 B =21748.612468 C =22105.920719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.515 6.515 13 N -0.739 5.739 14 C 0.122 3.878 15 C 0.052 3.948 16 N -0.682 5.682 17 C 0.153 3.847 18 C 0.186 3.814 19 N -0.477 5.477 20 C 0.181 3.819 21 C -0.028 4.028 22 C -0.129 4.129 23 C -0.138 4.138 24 C -0.127 4.127 25 N -0.379 5.379 26 O 0.089 5.911 27 H 0.268 0.732 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.354 0.646 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.408 -32.634 -2.201 34.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.389 6.389 13 N -0.395 5.395 14 C -0.003 4.003 15 C -0.078 4.078 16 N -0.316 5.316 17 C 0.022 3.978 18 C -0.035 4.035 19 N -0.212 5.212 20 C -0.092 4.092 21 C -0.048 4.048 22 C -0.167 4.167 23 C -0.176 4.176 24 C -0.165 4.165 25 N -0.084 5.084 26 O 0.030 5.970 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.232 0.768 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.173 0.827 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.843 -33.628 -1.424 34.801 hybrid contribution 2.800 1.640 -0.882 3.362 sum 11.643 -31.989 -2.306 34.120 Atomic orbital electron populations 1.70026 1.05960 1.27369 1.46921 1.24991 0.95014 0.99031 0.94520 0.86118 0.79578 0.81894 0.77910 1.19612 1.20575 1.20556 1.22907 0.94943 0.91636 1.58880 0.90859 1.85428 1.04897 0.96360 1.96715 1.23529 1.06608 0.95270 1.04969 1.20306 0.86490 0.86228 0.75133 1.90717 1.15369 1.85550 1.47242 1.45869 1.09990 1.05288 1.78312 1.21106 0.95483 0.80382 1.03300 1.22128 0.97063 0.86497 1.02069 1.60264 1.17686 1.02126 1.51515 1.20321 0.92591 0.79996 1.04857 1.28553 0.96389 0.97852 0.80732 1.71900 1.17137 1.03149 1.28969 1.25655 0.99742 0.95442 0.88345 1.21098 0.97893 0.87171 0.98623 1.23034 0.96346 0.95351 1.01997 1.22827 0.95622 0.96735 1.02399 1.22979 0.97187 0.93547 1.02823 1.74579 1.17290 1.00965 1.15601 1.85327 1.57221 1.18904 1.35562 0.92219 0.89139 0.89191 0.76831 0.91629 0.90440 0.89461 0.93644 0.82677 0.89928 0.86801 0.86163 0.89228 0.90454 0.89517 0.90642 0.90504 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.00 6.16 36.01 0.22 -2.77 16 11 C 0.53 9.61 7.85 -10.99 -0.09 9.52 16 12 O -0.52 -11.57 15.86 5.55 0.09 -11.48 16 13 N -0.74 -8.95 5.56 -60.30 -0.33 -9.29 16 14 C 0.12 1.27 5.93 -4.04 -0.02 1.24 16 15 C 0.05 0.32 5.80 -3.82 -0.02 0.30 16 16 N -0.68 -4.50 6.49 -115.06 -0.75 -5.25 16 17 C 0.15 0.79 6.31 -4.98 -0.03 0.75 16 18 C 0.19 1.52 8.03 -13.06 -0.10 1.42 16 19 N -0.48 -4.59 11.55 -9.87 -0.11 -4.71 16 20 C 0.18 1.72 7.26 -156.37 -1.14 0.59 16 21 C -0.03 -0.19 4.28 -90.96 -0.39 -0.58 16 22 C -0.13 -0.77 7.63 -25.83 -0.20 -0.97 16 23 C -0.14 -0.62 8.09 -25.83 -0.21 -0.83 16 24 C -0.13 -0.70 7.63 -25.92 -0.20 -0.90 16 25 N -0.38 -3.94 11.80 30.90 0.36 -3.58 16 26 O 0.09 0.87 11.31 18.10 0.20 1.07 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 29 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.40 3.48 8.47 -40.82 -0.35 3.13 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.35 2.46 8.72 -39.29 -0.34 2.11 16 36 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.65 7.81 -51.93 -0.41 0.24 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -36.10 392.26 -9.66 -45.76 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.55 Total: -0.42 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.98 Total: -5.06 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.10 Total: -48.14 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.29 Total: -10.41 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.10 -9.66 -45.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123798963.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.941 kcal (2) G-P(sol) polarization free energy of solvation -36.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds