Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48497 * 109.47274 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47229 * 119.99521 * 3 2 1 6 6 H 1.48505 * 109.47136 * 239.99316 * 3 2 1 7 7 C 1.38807 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00392 * 174.07334 * 9 7 2 11 11 C 1.53001 * 109.54245 * 62.21960 * 10 9 7 12 12 N 1.46493 * 109.47144 * 54.85337 * 11 10 9 13 13 C 1.34781 * 120.00128 * 176.66213 * 12 11 10 14 14 O 1.21570 * 119.99641 * 0.02562 * 13 12 11 15 15 C 1.47694 * 120.00120 * 179.97438 * 13 12 11 16 16 C 1.39650 * 120.15456 * 359.73486 * 15 13 12 17 17 C 1.38069 * 119.85182 * 179.73781 * 16 15 13 18 18 F 1.35109 * 119.91919 * 180.27102 * 17 16 15 19 19 C 1.38658 * 120.16511 * 0.52914 * 17 16 15 20 20 C 1.38190 * 120.31259 * 359.72209 * 19 17 16 21 21 C 1.38309 * 120.14522 * 0.02562 * 20 19 17 22 22 F 1.35096 * 120.08209 * 179.97438 * 21 20 19 23 23 C 1.53187 * 109.53928 * 302.04468 * 10 9 7 24 24 C 1.53281 * 109.06117 * 297.02629 * 23 10 9 25 25 O 1.42902 * 109.46084 * 302.44489 * 24 23 10 26 26 C 1.42902 * 114.09734 * 61.16486 * 25 24 23 27 27 C 1.53093 * 109.41056 * 298.83631 * 26 25 24 28 28 H 0.96997 * 120.00385 * 0.02562 * 1 2 3 29 29 H 0.97007 * 120.00136 * 354.06937 * 9 7 2 30 30 H 1.09010 * 109.46895 * 174.85000 * 11 10 9 31 31 H 1.08997 * 109.47285 * 294.84563 * 11 10 9 32 32 H 0.97001 * 119.99999 * 356.66284 * 12 11 10 33 33 H 1.08000 * 120.07322 * 359.96954 * 16 15 13 34 34 H 1.08000 * 119.84022 * 179.69848 * 19 17 16 35 35 H 1.08002 * 119.91964 * 179.97438 * 20 19 17 36 36 H 1.08992 * 109.52113 * 57.01898 * 23 10 9 37 37 H 1.09003 * 109.51488 * 177.20787 * 23 10 9 38 38 H 1.08998 * 109.45249 * 182.45354 * 24 23 10 39 39 H 1.09001 * 109.46552 * 62.45010 * 24 23 10 40 40 H 1.09006 * 109.48123 * 178.85975 * 26 25 24 41 41 H 1.08997 * 109.49323 * 58.82113 * 26 25 24 42 42 H 1.09001 * 109.52311 * 297.70336 * 27 26 25 43 43 H 1.09003 * 109.57175 * 177.54589 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7464 -0.0006 5 1 3.1037 1.6966 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0523 -3.6534 -0.1299 11 6 3.0002 -3.8241 1.0589 12 7 2.2429 -3.7093 2.3077 13 6 2.8620 -3.8937 3.4906 14 8 4.0489 -4.1548 3.5213 15 6 2.0986 -3.7774 4.7496 16 6 0.7365 -3.4711 4.7184 17 6 0.0278 -3.3692 5.8989 18 9 -1.2913 -3.0783 5.8700 19 6 0.6675 -3.5595 7.1143 20 6 2.0163 -3.8578 7.1534 21 6 2.7376 -3.9680 5.9784 22 9 4.0562 -4.2591 6.0182 23 6 2.8591 -3.6490 -1.4321 24 6 1.8934 -3.5567 -2.6189 25 8 0.9745 -4.6501 -2.5711 26 6 0.1612 -4.6777 -1.3964 27 6 1.0554 -4.8159 -0.1615 28 1 -0.4850 0.8400 -0.0004 29 1 0.3594 -2.3903 0.0870 30 1 3.4723 -4.8054 1.0092 31 1 3.7669 -3.0500 1.0264 32 1 1.2960 -3.5006 2.2832 33 1 0.2378 -3.3178 3.7728 34 1 0.1091 -3.4738 8.0347 35 1 2.5082 -4.0043 8.1036 36 1 3.5327 -2.7922 -1.4403 37 1 3.4382 -4.5696 -1.5048 38 1 2.4581 -3.5971 -3.5503 39 1 1.3435 -2.6170 -2.5675 40 1 -0.5221 -5.5255 -1.4471 41 1 -0.4115 -3.7528 -1.3287 42 1 1.5982 -5.7600 -0.2087 43 1 0.4411 -4.7935 0.7386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569730421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -130.994828 kcal Electronic energy + Delta-G solvation = -30520.423603 eV Core-core repulsion = 26009.027278 eV Total energy + Delta-G solvation = -4511.396325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.07274 -48.92056 -40.05049 -39.18449 -38.04136 -35.86044 -33.66895 -32.43693 -31.52915 -30.66429 -30.16666 -29.22658 -27.01040 -24.47180 -24.10664 -23.13549 -22.86172 -21.91126 -20.39622 -18.88884 -18.27045 -17.53872 -17.35991 -17.19332 -16.29026 -16.06755 -15.65062 -15.55995 -15.44547 -15.30861 -14.89357 -14.66089 -14.46609 -14.37303 -14.33149 -13.84623 -13.71786 -13.40176 -13.04580 -12.73543 -12.64103 -12.36321 -12.13018 -11.95637 -11.76532 -11.66216 -11.48449 -10.94640 -10.92891 -10.82244 -10.42101 -10.08729 -9.84469 -9.76833 -9.67127 -9.55372 -9.25289 -8.82951 -8.80726 -8.57313 -7.16602 -5.92165 -3.23311 0.40134 0.74242 2.70064 3.32579 3.35829 3.41197 3.42833 3.56080 3.90514 3.96330 4.28974 4.36128 4.46414 4.49976 4.78447 4.91710 5.11896 5.18936 5.31930 5.32706 5.47181 5.51585 5.55522 5.61114 5.63789 5.73888 5.75111 5.81211 5.96974 6.04162 6.06984 6.16111 6.27397 6.38248 6.47042 6.49101 6.51277 6.68519 6.74750 6.85609 7.59737 7.69992 7.81527 8.24769 8.44437 9.37623 9.86882 10.23716 11.29249 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009635 B = 0.004102 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.389252 B = 6823.732152 C = 7654.874328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.004 4.004 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.188 3.812 11 C 0.117 3.883 12 N -0.691 5.691 13 C 0.551 3.449 14 O -0.534 6.534 15 C -0.135 4.135 16 C -0.089 4.089 17 C 0.084 3.916 18 F -0.131 7.131 19 C -0.104 4.104 20 C -0.138 4.138 21 C 0.146 3.854 22 F -0.111 7.111 23 C -0.151 4.151 24 C 0.070 3.930 25 O -0.393 6.393 26 C 0.066 3.934 27 C -0.151 4.151 28 H 0.257 0.743 29 H 0.384 0.616 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.402 0.598 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 -10.027 9.537 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.732 3.268 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.096 3.904 11 C -0.009 4.009 12 N -0.341 5.341 13 C 0.336 3.664 14 O -0.413 6.413 15 C -0.140 4.140 16 C -0.109 4.109 17 C 0.064 3.936 18 F -0.109 7.109 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.126 3.874 22 F -0.089 7.089 23 C -0.192 4.192 24 C -0.007 4.007 25 O -0.312 6.312 26 C -0.011 4.011 27 C -0.190 4.190 28 H 0.067 0.933 29 H 0.219 0.781 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.239 0.761 33 H 0.170 0.830 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.130 -10.181 9.340 13.817 hybrid contribution -0.255 1.494 0.318 1.549 sum -0.125 -8.686 9.658 12.990 Atomic orbital electron populations 1.69622 1.05014 1.25998 1.56999 1.24690 0.95401 0.97539 1.02392 0.86364 0.78672 0.83763 0.77967 1.21732 1.21291 1.21178 1.19009 0.90980 0.83601 1.43437 0.91204 1.42486 1.06164 0.99496 1.87363 1.19850 0.91347 0.87425 0.91798 1.21902 0.95143 1.00517 0.83301 1.45661 1.13870 1.69412 1.05161 1.17799 0.86837 0.78449 0.83283 1.90816 1.14558 1.48693 1.87225 1.20042 0.93995 1.06061 0.93861 1.21316 0.92835 0.97817 0.98886 1.17480 0.78786 1.03260 0.94046 1.91557 1.31181 1.90900 1.97290 1.21143 0.94462 0.99248 0.97486 1.20968 0.93920 1.03021 0.97762 1.17684 0.78865 0.98060 0.92839 1.91608 1.30543 1.89699 1.97054 1.22474 0.98887 1.01604 0.96196 1.22484 0.90823 0.90261 0.97097 1.87799 1.52602 1.49696 1.41085 1.22457 0.92411 1.01670 0.84546 1.22358 0.98961 0.98709 0.98929 0.93343 0.78076 0.92358 0.91304 0.76072 0.82977 0.83335 0.83112 0.90365 0.92598 0.90372 0.91197 0.90058 0.92159 0.91131 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.36 13.07 55.49 0.73 -24.64 16 2 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 3 Si 0.90 21.32 29.55 -169.99 -5.02 16.29 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.24 -5.78 8.67 -15.06 -0.13 -5.91 16 8 H 0.07 1.71 6.78 -52.49 -0.36 1.35 16 9 N -0.71 -14.70 3.61 -47.06 -0.17 -14.87 16 10 C 0.19 3.20 0.41 -131.63 -0.05 3.15 16 11 C 0.12 2.03 4.37 -4.05 -0.02 2.02 16 12 N -0.69 -11.48 5.08 -61.30 -0.31 -11.79 16 13 C 0.55 9.62 7.77 -12.40 -0.10 9.52 16 14 O -0.53 -10.99 15.34 5.30 0.08 -10.91 16 15 C -0.14 -1.97 5.88 -104.92 -0.62 -2.58 16 16 C -0.09 -1.13 9.51 -39.12 -0.37 -1.50 16 17 C 0.08 0.95 7.29 -39.49 -0.29 0.67 16 18 F -0.13 -1.58 17.26 2.25 0.04 -1.55 16 19 C -0.10 -0.95 10.01 -39.44 -0.39 -1.35 16 20 C -0.14 -1.34 10.01 -39.57 -0.40 -1.73 16 21 C 0.15 1.96 7.28 -38.97 -0.28 1.68 16 22 F -0.11 -1.72 15.55 2.25 0.04 -1.69 16 23 C -0.15 -2.54 4.80 -26.49 -0.13 -2.67 16 24 C 0.07 1.19 6.68 37.30 0.25 1.44 16 25 O -0.39 -6.70 10.77 -35.23 -0.38 -7.08 16 26 C 0.07 1.01 6.67 37.21 0.25 1.26 16 27 C -0.15 -2.22 4.80 -26.59 -0.13 -2.35 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 29 H 0.38 8.50 6.81 -40.82 -0.28 8.22 16 30 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 31 H 0.07 1.36 7.47 -51.93 -0.39 0.97 16 32 H 0.40 6.32 5.45 -40.82 -0.22 6.09 16 33 H 0.15 1.86 6.40 -52.49 -0.34 1.52 16 34 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.08 1.40 7.19 -51.93 -0.37 1.03 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.39 7.75 -51.93 -0.40 0.99 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 1.03 7.14 -51.93 -0.37 0.66 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.92 7.37 -51.93 -0.38 0.53 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -29.41 358.70 -7.31 -36.72 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -5.20 Total: 12.64 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.50 Total: 1.47 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.24 Total: -51.30 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.30 Total: -17.98 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.07 Total: -3.23 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.41 -7.31 -36.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569730421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.277 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds