Wall clock time and date at job start Sat Apr 11 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99662 * 2 1 4 4 H 1.48497 * 109.47274 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47229 * 119.99521 * 3 2 1 6 6 H 1.48505 * 109.47136 * 239.99316 * 3 2 1 7 7 C 1.38807 * 120.00329 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00392 * 174.07334 * 9 7 2 11 11 C 1.53001 * 109.54245 * 62.21960 * 10 9 7 12 12 N 1.46493 * 109.47144 * 54.85337 * 11 10 9 13 13 C 1.34781 * 120.00128 * 176.66213 * 12 11 10 14 14 O 1.21570 * 119.99641 * 0.02562 * 13 12 11 15 15 C 1.47694 * 120.00120 * 179.97438 * 13 12 11 16 16 C 1.39650 * 120.15456 * 359.73486 * 15 13 12 17 17 C 1.38069 * 119.85182 * 179.73781 * 16 15 13 18 18 F 1.35109 * 119.91919 * 180.27102 * 17 16 15 19 19 C 1.38658 * 120.16511 * 0.52914 * 17 16 15 20 20 C 1.38190 * 120.31259 * 359.72209 * 19 17 16 21 21 C 1.38309 * 120.14522 * 0.02562 * 20 19 17 22 22 F 1.35096 * 120.08209 * 179.97438 * 21 20 19 23 23 C 1.53187 * 109.53928 * 302.04468 * 10 9 7 24 24 C 1.53281 * 109.06117 * 297.02629 * 23 10 9 25 25 O 1.42902 * 109.46084 * 302.44489 * 24 23 10 26 26 C 1.42902 * 114.09734 * 61.16486 * 25 24 23 27 27 C 1.53093 * 109.41056 * 298.83631 * 26 25 24 28 28 H 0.96997 * 120.00385 * 0.02562 * 1 2 3 29 29 H 0.97007 * 120.00136 * 354.06937 * 9 7 2 30 30 H 1.09010 * 109.46895 * 174.85000 * 11 10 9 31 31 H 1.08997 * 109.47285 * 294.84563 * 11 10 9 32 32 H 0.97001 * 119.99999 * 356.66284 * 12 11 10 33 33 H 1.08000 * 120.07322 * 359.96954 * 16 15 13 34 34 H 1.08000 * 119.84022 * 179.69848 * 19 17 16 35 35 H 1.08002 * 119.91964 * 179.97438 * 20 19 17 36 36 H 1.08992 * 109.52113 * 57.01898 * 23 10 9 37 37 H 1.09003 * 109.51488 * 177.20787 * 23 10 9 38 38 H 1.08998 * 109.45249 * 182.45354 * 24 23 10 39 39 H 1.09001 * 109.46552 * 62.45010 * 24 23 10 40 40 H 1.09006 * 109.48123 * 178.85975 * 26 25 24 41 41 H 1.08997 * 109.49323 * 58.82113 * 26 25 24 42 42 H 1.09001 * 109.52311 * 297.70336 * 27 26 25 43 43 H 1.09003 * 109.57175 * 177.54589 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7464 -0.0006 5 1 3.1037 1.6966 1.2126 6 1 3.1040 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0523 -3.6534 -0.1299 11 6 3.0002 -3.8241 1.0589 12 7 2.2429 -3.7093 2.3077 13 6 2.8620 -3.8937 3.4906 14 8 4.0489 -4.1548 3.5213 15 6 2.0986 -3.7774 4.7496 16 6 0.7365 -3.4711 4.7184 17 6 0.0278 -3.3692 5.8989 18 9 -1.2913 -3.0783 5.8700 19 6 0.6675 -3.5595 7.1143 20 6 2.0163 -3.8578 7.1534 21 6 2.7376 -3.9680 5.9784 22 9 4.0562 -4.2591 6.0182 23 6 2.8591 -3.6490 -1.4321 24 6 1.8934 -3.5567 -2.6189 25 8 0.9745 -4.6501 -2.5711 26 6 0.1612 -4.6777 -1.3964 27 6 1.0554 -4.8159 -0.1615 28 1 -0.4850 0.8400 -0.0004 29 1 0.3594 -2.3903 0.0870 30 1 3.4723 -4.8054 1.0092 31 1 3.7669 -3.0500 1.0264 32 1 1.2960 -3.5006 2.2832 33 1 0.2378 -3.3178 3.7728 34 1 0.1091 -3.4738 8.0347 35 1 2.5082 -4.0043 8.1036 36 1 3.5327 -2.7922 -1.4403 37 1 3.4382 -4.5696 -1.5048 38 1 2.4581 -3.5971 -3.5503 39 1 1.3435 -2.6170 -2.5675 40 1 -0.5221 -5.5255 -1.4471 41 1 -0.4115 -3.7528 -1.3287 42 1 1.5982 -5.7600 -0.2087 43 1 0.4411 -4.7935 0.7386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569730421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:05 Heat of formation + Delta-G solvation = -149.674124 kcal Electronic energy + Delta-G solvation = -30521.233598 eV Core-core repulsion = 26009.027278 eV Total energy + Delta-G solvation = -4512.206320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.00358 -49.99405 -41.35950 -40.46637 -39.15896 -37.32817 -35.25063 -34.03802 -32.60076 -31.98043 -31.10644 -30.96138 -28.36245 -25.99795 -25.45924 -24.43203 -23.98126 -23.15278 -21.68024 -20.26842 -19.53486 -19.04583 -18.54308 -18.30628 -17.41704 -17.18596 -17.04584 -16.89087 -16.66782 -16.45161 -16.24304 -16.11861 -15.77088 -15.65062 -15.41063 -15.36120 -15.21699 -14.49392 -14.23864 -14.12391 -13.74202 -13.67653 -13.65975 -13.18083 -13.02957 -12.91073 -12.83623 -12.70668 -12.57460 -12.28335 -12.11749 -11.76828 -11.44432 -11.16307 -11.14084 -10.96062 -10.49534 -10.33615 -10.03917 -9.71010 -9.00104 -7.92689 -5.19329 -0.57313 -0.16365 1.44497 1.46894 1.50419 1.60596 2.07365 2.42527 2.54795 2.97822 3.01138 3.07250 3.39201 3.40897 3.54487 3.73018 3.83878 3.86717 3.95094 4.00475 4.13514 4.22466 4.40354 4.46960 4.58854 4.67413 4.74465 4.75150 4.79855 4.81009 4.85886 4.88397 4.92965 5.01539 5.07893 5.18996 5.26883 5.33141 5.44167 5.58992 5.60495 6.28840 6.36520 6.46079 7.09141 7.38724 8.06210 8.33801 9.28957 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009635 B = 0.004102 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.389252 B = 6823.732152 C = 7654.874328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.057 4.057 3 Si 0.946 3.054 4 H -0.299 1.299 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.216 4.216 8 H 0.065 0.935 9 N -0.712 5.712 10 C 0.186 3.814 11 C 0.124 3.876 12 N -0.688 5.688 13 C 0.547 3.453 14 O -0.573 6.573 15 C -0.159 4.159 16 C -0.094 4.094 17 C 0.078 3.922 18 F -0.134 7.134 19 C -0.080 4.080 20 C -0.119 4.119 21 C 0.126 3.874 22 F -0.129 7.129 23 C -0.149 4.149 24 C 0.075 3.925 25 O -0.397 6.397 26 C 0.065 3.935 27 C -0.144 4.144 28 H 0.248 0.752 29 H 0.378 0.622 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.407 0.593 33 H 0.149 0.851 34 H 0.191 0.809 35 H 0.188 0.812 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.035 0.965 40 H 0.112 0.888 41 H 0.038 0.962 42 H 0.089 0.911 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 -11.475 11.256 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.250 4.250 3 Si 0.778 3.222 4 H -0.225 1.225 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.348 4.348 8 H 0.083 0.917 9 N -0.353 5.353 10 C 0.095 3.905 11 C -0.002 4.002 12 N -0.338 5.338 13 C 0.334 3.666 14 O -0.455 6.455 15 C -0.163 4.163 16 C -0.113 4.113 17 C 0.059 3.941 18 F -0.113 7.113 19 C -0.098 4.098 20 C -0.137 4.137 21 C 0.106 3.894 22 F -0.107 7.107 23 C -0.189 4.189 24 C -0.001 4.001 25 O -0.316 6.316 26 C -0.012 4.012 27 C -0.182 4.182 28 H 0.057 0.943 29 H 0.212 0.788 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.245 0.755 33 H 0.167 0.833 34 H 0.208 0.792 35 H 0.206 0.794 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.054 0.946 40 H 0.130 0.870 41 H 0.056 0.944 42 H 0.108 0.892 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.349 -11.654 11.050 16.064 hybrid contribution -0.103 1.861 -0.161 1.871 sum -0.452 -9.793 10.889 14.651 Atomic orbital electron populations 1.69726 1.05813 1.25636 1.59560 1.25164 0.95957 0.99649 1.04226 0.85629 0.77484 0.81466 0.77621 1.22508 1.21786 1.20918 1.19146 0.90811 0.84718 1.40128 0.91707 1.42489 1.05826 0.99936 1.87036 1.20037 0.91827 0.86819 0.91788 1.21769 0.94599 1.00149 0.83697 1.45640 1.13960 1.69179 1.04977 1.18287 0.86610 0.77378 0.84286 1.90781 1.16223 1.50617 1.87870 1.19827 0.94588 1.08930 0.92939 1.21257 0.92216 0.98183 0.99685 1.17636 0.78622 1.03356 0.94484 1.91554 1.31455 1.90965 1.97328 1.21587 0.94131 0.96094 0.97997 1.21342 0.93836 1.00799 0.97707 1.18095 0.78452 0.99073 0.93814 1.91560 1.31948 1.90070 1.97161 1.22441 0.98658 1.02052 0.95731 1.22393 0.90616 0.88926 0.98182 1.87800 1.52658 1.49185 1.41964 1.22576 0.92502 1.01897 0.84208 1.22318 0.98470 0.98050 0.99312 0.94251 0.78825 0.91130 0.94155 0.75540 0.83343 0.79211 0.79429 0.91984 0.90303 0.88342 0.94614 0.86999 0.94392 0.89249 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.44 13.07 21.65 0.28 -53.15 16 2 C -0.06 -3.00 5.50 84.86 0.47 -2.53 16 3 Si 0.95 44.68 29.55 68.60 2.03 46.71 16 4 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.22 -10.61 8.67 84.03 0.73 -9.88 16 8 H 0.07 3.23 6.78 -2.91 -0.02 3.21 16 9 N -0.71 -29.73 3.61 -302.81 -1.09 -30.82 16 10 C 0.19 6.26 0.41 3.73 0.00 6.27 16 11 C 0.12 4.31 4.37 86.38 0.38 4.69 16 12 N -0.69 -23.07 5.08 -466.12 -2.37 -25.44 16 13 C 0.55 19.46 7.77 86.74 0.67 20.13 16 14 O -0.57 -24.23 15.34 -3.94 -0.06 -24.29 16 15 C -0.16 -4.58 5.88 -20.06 -0.12 -4.70 16 16 C -0.09 -2.31 9.51 22.57 0.21 -2.10 16 17 C 0.08 1.60 7.29 22.33 0.16 1.77 16 18 F -0.13 -2.96 17.26 44.97 0.78 -2.19 16 19 C -0.08 -1.12 10.01 22.36 0.22 -0.90 16 20 C -0.12 -1.88 10.01 22.28 0.22 -1.66 16 21 C 0.13 3.25 7.28 22.67 0.17 3.41 16 22 F -0.13 -3.99 15.55 44.97 0.70 -3.29 16 23 C -0.15 -4.88 4.80 30.75 0.15 -4.73 16 24 C 0.08 2.53 6.68 72.08 0.48 3.01 16 25 O -0.40 -12.89 10.77 -148.98 -1.60 -14.50 16 26 C 0.06 1.88 6.67 72.01 0.48 2.36 16 27 C -0.14 -3.96 4.80 30.68 0.15 -3.81 16 28 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.38 16.98 6.81 -92.70 -0.63 16.35 16 30 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.04 1.63 7.47 -2.39 -0.02 1.61 16 32 H 0.41 12.86 5.45 -92.71 -0.51 12.36 16 33 H 0.15 3.64 6.40 -2.91 -0.02 3.63 16 34 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 35 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.06 2.23 7.19 -2.39 -0.02 2.22 16 37 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 40 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 41 H 0.04 1.28 7.14 -2.39 -0.02 1.26 16 42 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.08 2.03 7.37 -2.39 -0.02 2.01 16 Total: -1.00 -65.72 358.70 2.98 -62.75 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -0.06 Total: 32.91 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 4.38 Total: 11.32 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -3.18 Total: -109.42 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -1.66 Total: -38.79 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 1.48 Total: -5.48 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -65.72 2.98 -62.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569730421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.929 kcal (2) G-P(sol) polarization free energy of solvation -65.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds