Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00007 * 2 1 4 4 H 1.48504 * 109.47357 * 274.98858 * 3 2 1 5 5 H 1.48504 * 109.47283 * 34.98842 * 3 2 1 6 6 H 1.48505 * 109.47471 * 154.99005 * 3 2 1 7 7 C 1.38812 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00066 * 187.06177 * 7 2 1 9 9 N 1.36941 * 119.99985 * 7.05988 * 7 2 1 10 10 C 1.47022 * 125.64853 * 354.88058 * 9 7 2 11 11 C 1.54325 * 107.26934 * 178.90520 * 10 9 7 12 12 C 1.55157 * 102.94104 * 337.80644 * 11 10 9 13 13 O 1.42901 * 111.03764 * 277.41261 * 12 11 10 14 14 C 1.53004 * 110.99780 * 153.57866 * 12 11 10 15 15 N 1.46502 * 109.46600 * 191.35032 * 14 12 11 16 16 C 1.34775 * 119.99780 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00426 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99903 * 179.97438 * 16 15 14 19 19 C 1.50705 * 109.46874 * 179.97438 * 18 16 15 20 20 C 1.38231 * 119.98541 * 100.00288 * 19 18 16 21 21 C 1.38192 * 120.05114 * 179.97438 * 20 19 18 22 22 C 1.38498 * 120.02043 * 0.02562 * 21 20 19 23 23 F 1.35105 * 120.00689 * 179.97438 * 22 21 20 24 24 C 1.38392 * 119.97889 * 359.97438 * 22 21 20 25 25 C 1.38442 * 119.94809 * 359.72904 * 24 22 21 26 26 F 1.35103 * 120.01762 * 180.26645 * 25 24 22 27 27 C 1.47421 * 125.64672 * 174.83645 * 9 7 2 28 28 H 0.96993 * 119.99719 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.87933 * 298.32514 * 10 9 7 30 30 H 1.09003 * 109.87651 * 59.48781 * 10 9 7 31 31 H 1.08995 * 110.72078 * 96.17174 * 11 10 9 32 32 H 1.08996 * 110.71455 * 219.44353 * 11 10 9 33 33 H 0.96695 * 113.99846 * 173.67529 * 13 12 11 34 34 H 1.08995 * 109.47548 * 311.34473 * 14 12 11 35 35 H 1.08999 * 109.47490 * 71.35620 * 14 12 11 36 36 H 0.97001 * 120.00471 * 359.97438 * 15 14 12 37 37 H 1.08997 * 109.47369 * 299.99476 * 18 16 15 38 38 H 1.08997 * 109.47524 * 59.99653 * 18 16 15 39 39 H 1.08004 * 119.97733 * 359.97228 * 20 19 18 40 40 H 1.07991 * 119.98800 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.02738 * 179.97438 * 24 22 21 42 42 H 1.09001 * 110.37214 * 323.00688 * 27 9 7 43 43 H 1.09004 * 110.36652 * 85.21649 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2057 0.1144 9 7 1.3334 -2.3835 -0.1468 10 6 -0.1281 -2.5321 -0.2054 11 6 -0.4285 -4.0329 -0.4032 12 6 0.8921 -4.5743 -1.0116 13 8 0.9400 -4.3438 -2.4211 14 6 1.0727 -6.0604 -0.6955 15 7 2.4355 -6.4712 -1.0421 16 6 2.8245 -7.7470 -0.8486 17 8 2.0464 -8.5549 -0.3871 18 6 4.2262 -8.1698 -1.2056 19 6 4.4041 -9.6336 -0.8941 20 6 4.3218 -10.5704 -1.9072 21 6 4.4852 -11.9130 -1.6231 22 6 4.7311 -12.3212 -0.3227 23 9 4.8903 -13.6338 -0.0453 24 6 4.8137 -11.3841 0.6923 25 6 4.6559 -10.0389 0.4056 26 9 4.7416 -9.1225 1.3945 27 6 1.9496 -3.7169 -0.2725 28 1 -0.4849 0.8400 0.0004 29 1 -0.5737 -2.1845 0.7267 30 1 -0.5254 -1.9607 -1.0444 31 1 -0.6384 -4.5134 0.5523 32 1 -1.2580 -4.1719 -1.0965 33 1 1.7851 -4.5769 -2.8292 34 1 0.9017 -6.2291 0.3677 35 1 0.3585 -6.6447 -1.2757 36 1 3.0577 -5.8253 -1.4115 37 1 4.3970 -8.0009 -2.2688 38 1 4.9408 -7.5858 -0.6256 39 1 4.1297 -10.2530 -2.9215 40 1 4.4212 -12.6440 -2.4154 41 1 5.0050 -11.7016 1.7067 42 1 2.8667 -3.6573 -0.8586 43 1 2.1566 -4.1336 0.7132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569748816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -121.845320 kcal Electronic energy + Delta-G solvation = -29054.814510 eV Core-core repulsion = 24543.814937 eV Total energy + Delta-G solvation = -4510.999573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.35216 -49.27101 -40.23803 -39.13158 -38.29460 -35.11422 -34.20942 -33.12138 -32.11281 -31.18974 -29.75727 -28.68341 -27.32644 -25.60809 -23.69509 -23.57595 -22.39827 -20.86428 -20.08913 -19.86756 -18.57108 -17.73770 -17.57912 -16.95693 -16.65928 -16.28006 -16.12580 -15.84011 -15.56887 -15.48982 -15.19817 -14.75635 -14.71545 -14.41361 -14.18585 -14.09801 -13.62923 -13.56853 -13.20653 -12.88929 -12.54142 -12.29392 -12.18267 -12.05328 -11.95752 -11.74198 -11.72854 -11.01800 -10.92031 -10.73750 -10.41083 -10.28110 -10.13277 -9.93839 -9.78477 -9.46584 -9.42237 -9.14543 -8.97207 -8.59452 -6.86413 -5.75691 -3.08260 0.53999 0.64469 2.50433 2.82156 3.21570 3.37961 3.42714 3.45223 3.51289 4.01174 4.12433 4.16940 4.43975 4.44572 4.47346 4.64043 4.68590 4.89218 4.98866 5.07492 5.10727 5.34072 5.39900 5.41813 5.48679 5.54905 5.62413 5.63775 5.79196 5.81661 5.93390 6.14167 6.28138 6.31737 6.37063 6.40537 6.52099 6.57188 7.33947 7.49456 7.62671 7.80516 7.96310 8.08441 8.22178 9.17349 9.77857 10.43259 11.36441 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024575 B = 0.002122 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.076001 B =13189.816637 C =13629.994031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.077 0.923 9 N -0.598 5.598 10 C 0.180 3.820 11 C -0.128 4.128 12 C 0.102 3.898 13 O -0.537 6.537 14 C 0.105 3.895 15 N -0.725 5.725 16 C 0.515 3.485 17 O -0.534 6.534 18 C -0.104 4.104 19 C -0.109 4.109 20 C -0.051 4.051 21 C -0.163 4.163 22 C 0.128 3.872 23 F -0.133 7.133 24 C -0.192 4.192 25 C 0.149 3.851 26 F -0.126 7.126 27 C 0.117 3.883 28 H 0.253 0.747 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.364 0.636 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.400 0.600 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.038 0.962 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.168 -22.720 -4.696 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.361 4.361 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.056 3.944 11 C -0.167 4.167 12 C 0.060 3.940 13 O -0.341 6.341 14 C -0.019 4.019 15 N -0.377 5.377 16 C 0.300 3.700 17 O -0.411 6.411 18 C -0.144 4.144 19 C -0.110 4.110 20 C -0.069 4.069 21 C -0.182 4.182 22 C 0.108 3.892 23 F -0.111 7.111 24 C -0.211 4.211 25 C 0.130 3.870 26 F -0.104 7.104 27 C -0.010 4.010 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.210 0.790 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.235 0.765 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.056 0.944 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.916 -22.855 -4.164 24.884 hybrid contribution 1.348 0.939 0.075 1.644 sum 10.263 -21.916 -4.090 24.543 Atomic orbital electron populations 1.69971 1.04948 1.25149 1.56320 1.24832 0.95705 0.97715 1.01941 0.86117 0.78645 0.83574 0.77511 1.21573 1.21736 1.20656 1.19015 0.91060 0.82505 1.43494 0.90486 1.44344 1.01647 1.00547 1.85912 1.21155 0.84332 0.88019 1.00922 1.22907 0.94605 1.00041 0.99111 1.22697 0.99289 0.90224 0.81819 1.86634 1.38670 1.88840 1.19935 1.22057 0.82602 0.95604 1.01660 1.45990 1.15131 1.10679 1.65936 1.20360 0.89186 0.82156 0.78262 1.90733 1.54723 1.51647 1.43954 1.20617 0.95949 0.92829 1.04988 1.19402 1.03666 0.95863 0.92100 1.20761 0.95682 0.91189 0.99231 1.21157 1.04412 0.97276 0.95377 1.17297 1.00671 0.77787 0.93396 1.91533 1.92832 1.32301 1.94468 1.21000 1.07738 0.91380 1.01022 1.17087 0.99426 0.85769 0.84763 1.91551 1.93162 1.65380 1.60295 1.22134 0.94219 0.87926 0.96750 0.93661 0.93937 0.92960 0.90927 0.90918 0.79008 0.90432 0.90742 0.76493 0.86957 0.87183 0.83817 0.83905 0.83383 0.94396 0.95610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.36 55.49 0.57 -26.30 16 2 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 21.87 29.56 -169.99 -5.02 16.84 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.38 10.27 -15.06 -0.15 -6.54 16 8 H 0.08 2.03 7.84 -52.49 -0.41 1.61 16 9 N -0.60 -14.92 3.39 -170.07 -0.58 -15.50 16 10 C 0.18 4.37 5.38 -3.06 -0.02 4.35 16 11 C -0.13 -2.37 6.16 -24.90 -0.15 -2.52 16 12 C 0.10 1.67 0.95 -88.47 -0.08 1.58 16 13 O -0.54 -8.85 13.18 -35.23 -0.46 -9.31 16 14 C 0.10 1.44 4.97 -4.04 -0.02 1.42 16 15 N -0.73 -8.04 5.19 -60.29 -0.31 -8.35 16 16 C 0.51 6.03 7.82 -10.98 -0.09 5.95 16 17 O -0.53 -8.45 15.96 5.56 0.09 -8.36 16 18 C -0.10 -0.81 5.56 -29.03 -0.16 -0.98 16 19 C -0.11 -0.99 4.43 -104.54 -0.46 -1.45 16 20 C -0.05 -0.37 9.66 -39.60 -0.38 -0.75 16 21 C -0.16 -1.20 10.03 -39.50 -0.40 -1.59 16 22 C 0.13 1.13 7.30 -39.43 -0.29 0.85 16 23 F -0.13 -1.23 17.27 2.25 0.04 -1.19 16 24 C -0.19 -1.79 10.01 -39.45 -0.39 -2.19 16 25 C 0.15 1.56 7.14 -39.43 -0.28 1.28 16 26 F -0.13 -1.49 16.65 2.25 0.04 -1.45 16 27 C 0.12 2.23 5.74 -2.53 -0.01 2.21 16 28 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 29 H 0.04 1.13 7.61 -51.93 -0.40 0.73 16 30 H 0.05 1.43 7.30 -51.93 -0.38 1.05 16 31 H 0.07 1.22 7.94 -51.93 -0.41 0.80 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.36 4.40 8.57 45.56 0.39 4.79 16 34 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 3.54 7.31 -40.82 -0.30 3.24 16 37 H 0.11 0.51 8.00 -51.93 -0.42 0.10 16 38 H 0.11 0.75 7.93 -51.93 -0.41 0.33 16 39 H 0.14 0.65 8.04 -52.48 -0.42 0.23 16 40 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 42 H 0.04 0.66 7.80 -51.93 -0.41 0.26 16 43 H 0.03 0.50 8.04 -51.93 -0.42 0.08 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -34.76 368.86 -7.89 -42.65 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.82 Total: 4.04 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.99 Total: 1.38 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.32 Total: -50.15 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.38 Total: -17.67 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.08 Total: -2.64 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.76 -7.89 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569748816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.195 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds