Wall clock time and date at job start Sat Apr 11 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00007 * 2 1 4 4 H 1.48504 * 109.47357 * 274.98858 * 3 2 1 5 5 H 1.48504 * 109.47283 * 34.98842 * 3 2 1 6 6 H 1.48505 * 109.47471 * 154.99005 * 3 2 1 7 7 C 1.38812 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00066 * 187.06177 * 7 2 1 9 9 N 1.36941 * 119.99985 * 7.05988 * 7 2 1 10 10 C 1.47022 * 125.64853 * 354.88058 * 9 7 2 11 11 C 1.54325 * 107.26934 * 178.90520 * 10 9 7 12 12 C 1.55157 * 102.94104 * 337.80644 * 11 10 9 13 13 O 1.42901 * 111.03764 * 277.41261 * 12 11 10 14 14 C 1.53004 * 110.99780 * 153.57866 * 12 11 10 15 15 N 1.46502 * 109.46600 * 191.35032 * 14 12 11 16 16 C 1.34775 * 119.99780 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00426 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99903 * 179.97438 * 16 15 14 19 19 C 1.50705 * 109.46874 * 179.97438 * 18 16 15 20 20 C 1.38231 * 119.98541 * 100.00288 * 19 18 16 21 21 C 1.38192 * 120.05114 * 179.97438 * 20 19 18 22 22 C 1.38498 * 120.02043 * 0.02562 * 21 20 19 23 23 F 1.35105 * 120.00689 * 179.97438 * 22 21 20 24 24 C 1.38392 * 119.97889 * 359.97438 * 22 21 20 25 25 C 1.38442 * 119.94809 * 359.72904 * 24 22 21 26 26 F 1.35103 * 120.01762 * 180.26645 * 25 24 22 27 27 C 1.47421 * 125.64672 * 174.83645 * 9 7 2 28 28 H 0.96993 * 119.99719 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.87933 * 298.32514 * 10 9 7 30 30 H 1.09003 * 109.87651 * 59.48781 * 10 9 7 31 31 H 1.08995 * 110.72078 * 96.17174 * 11 10 9 32 32 H 1.08996 * 110.71455 * 219.44353 * 11 10 9 33 33 H 0.96695 * 113.99846 * 173.67529 * 13 12 11 34 34 H 1.08995 * 109.47548 * 311.34473 * 14 12 11 35 35 H 1.08999 * 109.47490 * 71.35620 * 14 12 11 36 36 H 0.97001 * 120.00471 * 359.97438 * 15 14 12 37 37 H 1.08997 * 109.47369 * 299.99476 * 18 16 15 38 38 H 1.08997 * 109.47524 * 59.99653 * 18 16 15 39 39 H 1.08004 * 119.97733 * 359.97228 * 20 19 18 40 40 H 1.07991 * 119.98800 * 180.02562 * 21 20 19 41 41 H 1.08003 * 120.02738 * 179.97438 * 24 22 21 42 42 H 1.09001 * 110.37214 * 323.00688 * 27 9 7 43 43 H 1.09004 * 110.36652 * 85.21649 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5919 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2057 0.1144 9 7 1.3334 -2.3835 -0.1468 10 6 -0.1281 -2.5321 -0.2054 11 6 -0.4285 -4.0329 -0.4032 12 6 0.8921 -4.5743 -1.0116 13 8 0.9400 -4.3438 -2.4211 14 6 1.0727 -6.0604 -0.6955 15 7 2.4355 -6.4712 -1.0421 16 6 2.8245 -7.7470 -0.8486 17 8 2.0464 -8.5549 -0.3871 18 6 4.2262 -8.1698 -1.2056 19 6 4.4041 -9.6336 -0.8941 20 6 4.3218 -10.5704 -1.9072 21 6 4.4852 -11.9130 -1.6231 22 6 4.7311 -12.3212 -0.3227 23 9 4.8903 -13.6338 -0.0453 24 6 4.8137 -11.3841 0.6923 25 6 4.6559 -10.0389 0.4056 26 9 4.7416 -9.1225 1.3945 27 6 1.9496 -3.7169 -0.2725 28 1 -0.4849 0.8400 0.0004 29 1 -0.5737 -2.1845 0.7267 30 1 -0.5254 -1.9607 -1.0444 31 1 -0.6384 -4.5134 0.5523 32 1 -1.2580 -4.1719 -1.0965 33 1 1.7851 -4.5769 -2.8292 34 1 0.9017 -6.2291 0.3677 35 1 0.3585 -6.6447 -1.2757 36 1 3.0577 -5.8253 -1.4115 37 1 4.3970 -8.0009 -2.2688 38 1 4.9408 -7.5858 -0.6256 39 1 4.1297 -10.2530 -2.9215 40 1 4.4212 -12.6440 -2.4154 41 1 5.0050 -11.7016 1.7067 42 1 2.8667 -3.6573 -0.8586 43 1 2.1566 -4.1336 0.7132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569748816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:07 Heat of formation + Delta-G solvation = -147.041754 kcal Electronic energy + Delta-G solvation = -29055.907109 eV Core-core repulsion = 24543.814937 eV Total energy + Delta-G solvation = -4512.092172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.05939 -50.02086 -41.18323 -40.15677 -39.35124 -36.72686 -35.30602 -34.02856 -33.73856 -31.80379 -31.41876 -29.99397 -28.38696 -27.20886 -25.21369 -24.22145 -23.20167 -22.26477 -21.39890 -21.24345 -19.27029 -18.94808 -18.57550 -18.27953 -17.64745 -17.15285 -16.92209 -16.75162 -16.70534 -16.41680 -16.32042 -16.12823 -15.80638 -15.60931 -15.43327 -15.05699 -14.82611 -14.70535 -14.27374 -14.02915 -13.89611 -13.61243 -13.23546 -12.98905 -12.94516 -12.88633 -12.77078 -12.72100 -12.34585 -12.32158 -12.08417 -11.99763 -11.80883 -11.72141 -11.03453 -10.86110 -10.66272 -10.14346 -10.05844 -9.63600 -8.88415 -7.85758 -5.19917 -0.10423 0.02654 1.46557 1.48620 1.57206 1.63821 2.05376 2.46675 2.49648 2.86636 3.20227 3.33400 3.38010 3.50030 3.51709 3.58798 3.64799 3.89950 3.92430 3.97627 3.98730 4.13108 4.43855 4.51009 4.55933 4.59640 4.67759 4.80551 4.82628 4.87478 4.94234 4.94700 4.98553 5.05817 5.10131 5.20962 5.34962 5.45159 5.63826 5.76080 5.76396 6.19208 6.49655 6.87682 7.09292 7.22433 7.77156 8.41550 9.25607 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024575 B = 0.002122 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.076001 B =13189.816637 C =13629.994031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.241 4.241 8 H 0.087 0.913 9 N -0.621 5.621 10 C 0.188 3.812 11 C -0.122 4.122 12 C 0.124 3.876 13 O -0.552 6.552 14 C 0.121 3.879 15 N -0.716 5.716 16 C 0.514 3.486 17 O -0.579 6.579 18 C -0.098 4.098 19 C -0.118 4.118 20 C -0.046 4.046 21 C -0.157 4.157 22 C 0.113 3.887 23 F -0.139 7.139 24 C -0.203 4.203 25 C 0.121 3.879 26 F -0.141 7.141 27 C 0.112 3.888 28 H 0.246 0.754 29 H 0.005 0.995 30 H 0.010 0.990 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.385 0.615 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.414 0.586 37 H 0.155 0.845 38 H 0.122 0.878 39 H 0.178 0.822 40 H 0.169 0.831 41 H 0.151 0.849 42 H 0.061 0.939 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.086 -24.017 -6.536 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.807 3.193 4 H -0.215 1.215 5 H -0.225 1.225 6 H -0.189 1.189 7 C -0.370 4.370 8 H 0.105 0.895 9 N -0.347 5.347 10 C 0.063 3.937 11 C -0.161 4.161 12 C 0.082 3.918 13 O -0.359 6.359 14 C -0.004 4.004 15 N -0.369 5.369 16 C 0.302 3.698 17 O -0.458 6.458 18 C -0.137 4.137 19 C -0.119 4.119 20 C -0.064 4.064 21 C -0.176 4.176 22 C 0.094 3.906 23 F -0.117 7.117 24 C -0.223 4.223 25 C 0.102 3.898 26 F -0.120 7.120 27 C -0.013 4.013 28 H 0.055 0.945 29 H 0.023 0.977 30 H 0.028 0.972 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.234 0.766 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.251 0.749 37 H 0.172 0.828 38 H 0.140 0.860 39 H 0.196 0.804 40 H 0.186 0.814 41 H 0.169 0.831 42 H 0.079 0.921 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.901 -24.178 -6.024 27.197 hybrid contribution 0.775 1.272 0.639 1.621 sum 11.677 -22.906 -5.384 26.268 Atomic orbital electron populations 1.70205 1.06491 1.25253 1.58047 1.25706 0.96561 1.01223 1.02655 0.85062 0.77908 0.79161 0.77212 1.21454 1.22507 1.18898 1.19467 0.91730 0.83717 1.42072 0.89509 1.44641 1.02177 1.02116 1.85809 1.20842 0.84241 0.91302 0.97300 1.22792 0.96389 0.96147 1.00772 1.22339 0.96544 0.91297 0.81636 1.86602 1.40520 1.89163 1.19655 1.21686 0.84334 0.93218 1.01186 1.45857 1.14254 1.11105 1.65718 1.21012 0.90285 0.81488 0.77019 1.90724 1.56343 1.52811 1.45923 1.20708 0.93186 0.92063 1.07745 1.19684 1.03396 0.97033 0.91811 1.21185 0.94217 0.90655 1.00337 1.21518 1.02723 0.98137 0.95183 1.17505 1.01461 0.77472 0.94148 1.91516 1.92984 1.32635 1.94602 1.21120 1.08043 0.91493 1.01627 1.17412 1.01198 0.85902 0.85334 1.91502 1.93539 1.65872 1.61074 1.22362 0.95652 0.85646 0.97674 0.94486 0.97672 0.97164 0.89064 0.89986 0.76559 0.91277 0.90516 0.74892 0.82776 0.85982 0.80428 0.81369 0.83129 0.92128 0.95133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.82 10.36 21.65 0.22 -57.60 16 2 C -0.07 -3.89 5.48 84.86 0.46 -3.42 16 3 Si 0.98 45.38 29.56 68.60 2.03 47.41 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.24 -13.22 10.27 84.03 0.86 -12.35 16 8 H 0.09 4.46 7.84 -2.91 -0.02 4.44 16 9 N -0.62 -31.03 3.39 -691.98 -2.35 -33.38 16 10 C 0.19 9.40 5.38 86.73 0.47 9.87 16 11 C -0.12 -4.46 6.16 31.78 0.20 -4.27 16 12 C 0.12 3.81 0.95 -9.40 -0.01 3.80 16 13 O -0.55 -16.83 13.18 -148.98 -1.96 -18.79 16 14 C 0.12 3.01 4.97 86.38 0.43 3.44 16 15 N -0.72 -13.56 5.19 -463.05 -2.40 -15.96 16 16 C 0.51 10.60 7.82 87.66 0.69 11.28 16 17 O -0.58 -17.33 15.96 -3.03 -0.05 -17.37 16 18 C -0.10 -1.18 5.56 29.10 0.16 -1.02 16 19 C -0.12 -1.84 4.43 -19.81 -0.09 -1.93 16 20 C -0.05 -0.51 9.66 22.26 0.22 -0.29 16 21 C -0.16 -1.88 10.03 22.32 0.22 -1.66 16 22 C 0.11 1.89 7.30 22.37 0.16 2.05 16 23 F -0.14 -2.47 17.27 44.97 0.78 -1.70 16 24 C -0.20 -3.77 10.01 22.36 0.22 -3.54 16 25 C 0.12 2.44 7.14 22.37 0.16 2.60 16 26 F -0.14 -3.34 16.65 44.97 0.75 -2.59 16 27 C 0.11 4.07 5.74 86.85 0.50 4.57 16 28 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.01 0.28 7.61 -2.39 -0.02 0.27 16 30 H 0.01 0.58 7.30 -2.39 -0.02 0.56 16 31 H 0.09 2.97 7.94 -2.39 -0.02 2.95 16 32 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.39 7.94 8.57 -74.06 -0.63 7.31 16 34 H 0.07 1.89 8.00 -2.39 -0.02 1.87 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.41 5.63 7.31 -92.71 -0.68 4.96 16 37 H 0.15 0.55 8.00 -2.39 -0.02 0.53 16 38 H 0.12 1.23 7.93 -2.39 -0.02 1.21 16 39 H 0.18 0.69 8.04 -2.91 -0.02 0.66 16 40 H 0.17 1.09 8.06 -2.92 -0.02 1.07 16 41 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 42 H 0.06 1.93 7.80 -2.39 -0.02 1.91 16 43 H 0.03 1.12 8.04 -2.38 -0.02 1.10 16 Total: -1.00 -78.95 368.86 1.42 -77.53 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -0.24 Total: 13.33 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 4.65 Total: 9.12 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -4.53 Total: -106.94 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -2.01 Total: -36.16 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 1.53 Total: -4.28 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -78.95 1.42 -77.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569748816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.515 kcal (2) G-P(sol) polarization free energy of solvation -78.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds