Wall clock time and date at job start Sat Apr 11 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99994 * 2 1 4 4 H 1.48499 * 109.47195 * 270.00322 * 3 2 1 5 5 H 1.48507 * 109.46994 * 150.00653 * 3 2 1 6 6 H 1.48494 * 109.47086 * 30.00734 * 3 2 1 7 7 C 1.38819 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99572 * 155.54866 * 7 2 1 9 9 N 1.36933 * 119.99655 * 335.54352 * 7 2 1 10 10 C 1.48150 * 127.83528 * 158.37879 * 9 7 2 11 11 C 1.54790 * 104.41815 * 140.36727 * 10 9 7 12 12 H 1.09003 * 118.32833 * 244.38662 * 11 10 9 13 13 C 1.54282 * 104.92125 * 24.16308 * 11 10 9 14 14 H 1.08999 * 121.81775 * 222.88773 * 13 11 10 15 15 C 1.48141 * 127.84283 * 338.69323 * 9 7 2 16 16 C 1.52997 * 61.49846 * 114.02041 * 13 11 10 17 17 H 1.09009 * 117.44294 * 251.43658 * 16 13 11 18 18 N 1.46501 * 117.44392 * 106.68983 * 16 13 11 19 19 C 1.34777 * 119.99924 * 154.99535 * 18 16 13 20 20 O 1.21542 * 119.99945 * 0.02562 * 19 18 16 21 21 C 1.47965 * 119.99860 * 179.97438 * 19 18 16 22 22 C 1.39509 * 119.57571 * 179.73004 * 21 19 18 23 23 C 1.38213 * 119.20022 * 179.75136 * 22 21 19 24 24 C 1.39946 * 118.37685 * 0.51150 * 23 22 21 25 25 C 1.47833 * 120.46137 * 179.70573 * 24 23 22 26 26 C 1.36792 * 127.14204 * 359.70578 * 25 24 23 27 27 N 1.33478 * 106.36833 * 179.88157 * 26 25 24 28 28 N 1.28527 * 109.33395 * 0.39581 * 27 26 25 29 29 N 1.28712 * 110.57477 * 359.74763 * 28 27 26 30 30 H 0.97001 * 125.99025 * 180.02562 * 29 28 27 31 31 C 1.39888 * 119.08312 * 359.73362 * 24 23 22 32 32 N 1.31289 * 120.71127 * 0.02562 * 31 24 23 33 33 H 0.97003 * 120.00000 * 174.38152 * 1 2 3 34 34 H 1.08999 * 110.40586 * 259.19674 * 10 9 7 35 35 H 1.08999 * 110.40860 * 21.62507 * 10 9 7 36 36 H 1.09001 * 110.40844 * 338.37466 * 15 9 7 37 37 H 1.09003 * 110.40914 * 100.68268 * 15 9 7 38 38 H 0.96993 * 120.00172 * 335.00380 * 18 16 13 39 39 H 1.07995 * 120.40017 * 359.97438 * 22 21 19 40 40 H 1.07998 * 120.81008 * 180.26445 * 23 22 21 41 41 H 1.08003 * 126.81644 * 0.02621 * 26 25 24 42 42 H 1.08005 * 119.64614 * 180.02562 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 3.5478 1.4401 0.6999 6 1 1.4477 2.6526 0.7002 7 6 2.0102 -1.2022 -0.0005 8 1 3.0176 -1.2439 -0.3877 9 7 1.4177 -2.3351 0.4899 10 6 1.7695 -3.7441 0.1975 11 6 1.6256 -4.4677 1.5583 12 1 2.5186 -4.8968 2.0130 13 6 0.6376 -3.6010 2.3665 14 1 0.8020 -3.3726 3.4196 15 6 0.2752 -2.4298 1.4283 16 6 0.2071 -5.0114 1.9588 17 1 -0.5535 -5.0999 1.1830 18 7 0.1601 -6.0328 3.0080 19 6 -0.6496 -7.1016 2.8722 20 8 -1.3405 -7.2183 1.8791 21 6 -0.6966 -8.1335 3.9317 22 6 -1.5422 -9.2334 3.7846 23 6 -1.5761 -10.1952 4.7766 24 6 -0.7624 -10.0194 5.9015 25 6 -0.7672 -11.0164 6.9931 26 6 -1.5116 -12.1620 7.0621 27 7 -1.1918 -12.7494 8.2172 28 7 -0.3227 -12.0307 8.8338 29 7 -0.0331 -10.9820 8.1460 30 1 0.5959 -10.2889 8.4009 31 6 0.0551 -8.8870 5.9792 32 7 0.0626 -7.9979 5.0132 33 1 -0.4850 -0.8360 -0.0822 34 1 1.0792 -4.1643 -0.5339 35 1 2.7956 -3.8126 -0.1639 36 1 0.1725 -1.5053 1.9966 37 1 -0.6453 -2.6457 0.8859 38 1 0.7117 -5.9398 3.8004 39 1 -2.1601 -9.3339 2.9046 40 1 -2.2178 -11.0593 4.6875 41 1 -2.2164 -12.5212 6.3267 42 1 0.6870 -8.7424 6.8431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577706610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:31 Heat of formation + Delta-G solvation = 134.561823 kcal Electronic energy + Delta-G solvation = -27108.267130 eV Core-core repulsion = 23091.368143 eV Total energy + Delta-G solvation = -4016.898987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.32726 -41.80805 -40.70261 -39.63578 -36.34391 -35.15773 -34.58579 -34.23646 -33.06630 -32.05976 -30.70863 -29.13590 -27.55722 -26.30878 -25.32071 -23.97345 -23.44453 -23.00736 -22.05711 -21.81854 -20.98839 -19.96428 -19.53115 -19.09068 -18.13864 -17.34494 -17.21668 -16.99750 -16.38363 -16.33757 -16.04017 -15.74930 -15.42792 -15.32799 -15.20882 -14.97119 -14.79601 -14.32184 -13.94319 -13.80752 -13.58183 -13.33211 -12.82555 -12.64638 -12.54752 -12.32939 -12.26189 -11.98517 -11.91332 -11.85630 -11.68845 -11.55799 -11.55344 -10.96563 -10.85124 -10.74829 -10.62731 -9.85844 -9.57372 -9.11125 -8.39503 -5.42203 -0.97306 0.08634 0.56143 1.33391 1.57579 1.59560 1.65453 1.65799 1.73376 1.84106 2.54933 2.62237 2.77898 2.79814 3.15428 3.21595 3.35647 3.42075 3.54650 3.67051 3.70398 3.75692 3.78010 3.93238 3.98541 4.09341 4.24118 4.26582 4.40157 4.57744 4.63823 4.68294 4.84649 4.86314 4.89195 4.97749 5.04424 5.13221 5.19915 5.30289 5.36265 5.61676 5.80908 6.22154 6.24360 6.58381 6.78505 6.97519 7.29098 7.62008 8.29186 8.96254 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.032545 B = 0.001715 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.145448 B =16321.674030 C =16770.961084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.079 4.079 3 Si 1.124 2.876 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.289 1.289 7 C -0.341 4.341 8 H 0.064 0.936 9 N -0.621 5.621 10 C 0.148 3.852 11 C -0.163 4.163 12 H 0.138 0.862 13 C -0.168 4.168 14 H 0.128 0.872 15 C 0.169 3.831 16 C 0.115 3.885 17 H 0.117 0.883 18 N -0.666 5.666 19 C 0.569 3.431 20 O -0.563 6.563 21 C 0.068 3.932 22 C -0.101 4.101 23 C -0.042 4.042 24 C -0.042 4.042 25 C 0.032 3.968 26 C -0.019 4.019 27 N -0.301 5.301 28 N -0.088 5.088 29 N -0.369 5.369 30 H 0.465 0.535 31 C 0.109 3.891 32 N -0.463 5.463 33 H 0.253 0.747 34 H 0.020 0.980 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.009 0.991 38 H 0.422 0.578 39 H 0.160 0.840 40 H 0.189 0.811 41 H 0.228 0.772 42 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 -25.082 16.851 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.275 4.275 3 Si 0.948 3.052 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.215 1.215 7 C -0.469 4.469 8 H 0.082 0.918 9 N -0.347 5.347 10 C 0.023 3.977 11 C -0.184 4.184 12 H 0.156 0.844 13 C -0.189 4.189 14 H 0.146 0.854 15 C 0.043 3.957 16 C 0.008 3.992 17 H 0.135 0.865 18 N -0.314 5.314 19 C 0.355 3.645 20 O -0.442 6.442 21 C -0.069 4.069 22 C -0.122 4.122 23 C -0.069 4.069 24 C -0.047 4.047 25 C -0.102 4.102 26 C -0.177 4.177 27 N -0.165 5.165 28 N -0.068 5.068 29 N -0.094 5.094 30 H 0.315 0.685 31 C -0.053 4.053 32 N -0.173 5.173 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.260 0.740 39 H 0.177 0.823 40 H 0.206 0.794 41 H 0.244 0.756 42 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.504 -23.550 17.522 29.358 hybrid contribution -0.062 -0.933 -0.904 1.301 sum -0.566 -24.483 16.618 29.595 Atomic orbital electron populations 1.70864 1.07618 1.29406 1.50948 1.27377 0.96647 1.04848 0.98623 0.82758 0.73927 0.71429 0.77134 1.20730 1.19798 1.21512 1.20053 0.97272 0.88036 1.41549 0.91827 1.45557 1.37804 1.01330 1.49984 1.21318 0.98732 0.84258 0.93428 1.25008 0.93633 1.02270 0.97503 0.84442 1.24151 1.04562 0.90271 0.99914 0.85387 1.20943 0.89663 0.95022 0.90058 1.22146 0.97324 0.86870 0.92860 0.86527 1.45028 1.43384 1.20724 1.22302 1.18261 0.79204 0.81389 0.85598 1.90805 1.44088 1.77692 1.31571 1.20918 0.97225 0.95486 0.93261 1.22204 0.97061 0.92117 1.00829 1.21929 0.96051 0.99129 0.89751 1.18981 0.98824 0.93861 0.93024 1.20470 1.00040 0.99334 0.90318 1.24373 1.02981 0.92777 0.97607 1.74980 1.09927 1.24278 1.07324 1.78246 1.13830 0.95081 1.19602 1.45446 1.31374 1.19495 1.13094 0.68519 1.23228 0.96487 0.88440 0.97179 1.67452 1.19632 1.29588 1.00647 0.93683 0.96228 0.92091 0.94308 0.97309 0.74025 0.82263 0.79401 0.75599 0.79321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.95 12.82 21.65 0.28 -58.67 16 2 C -0.08 -4.59 5.12 84.86 0.43 -4.16 16 3 Si 1.12 51.06 29.98 68.60 2.06 53.11 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.34 -19.52 10.19 84.04 0.86 -18.66 16 8 H 0.06 3.57 7.94 -2.91 -0.02 3.55 16 9 N -0.62 -32.25 3.22 -687.36 -2.21 -34.46 16 10 C 0.15 6.24 7.08 86.67 0.61 6.85 16 11 C -0.16 -5.43 7.25 -8.30 -0.06 -5.49 16 12 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 13 C -0.17 -5.96 6.91 -9.89 -0.07 -6.03 16 14 H 0.13 3.98 8.14 -2.39 -0.02 3.96 16 15 C 0.17 8.07 4.99 86.53 0.43 8.51 16 16 C 0.12 3.65 6.19 46.43 0.29 3.93 16 17 H 0.12 4.27 7.40 -2.38 -0.02 4.25 16 18 N -0.67 -16.75 5.56 -438.45 -2.44 -19.18 16 19 C 0.57 14.74 7.80 86.82 0.68 15.42 16 20 O -0.56 -18.45 15.87 -3.85 -0.06 -18.52 16 21 C 0.07 1.24 6.75 41.88 0.28 1.53 16 22 C -0.10 -1.30 9.61 22.57 0.22 -1.09 16 23 C -0.04 -0.26 9.69 22.68 0.22 -0.04 16 24 C -0.04 -0.28 5.90 -19.92 -0.12 -0.40 16 25 C 0.03 0.22 7.05 40.58 0.29 0.51 16 26 C -0.02 -0.16 11.50 84.10 0.97 0.81 16 27 N -0.30 -4.75 12.36 -57.54 -0.71 -5.46 16 28 N -0.09 -1.27 13.35 37.02 0.49 -0.78 16 29 N -0.37 -2.54 6.95 -48.38 -0.34 -2.88 16 30 H 0.46 -0.25 8.23 -219.90 -1.81 -2.06 16 31 C 0.11 0.89 10.89 85.17 0.93 1.82 16 32 N -0.46 -6.88 9.51 -183.97 -1.75 -8.63 16 33 H 0.25 16.13 6.41 -92.71 -0.59 15.53 16 34 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.04 2.05 7.47 -2.39 -0.02 2.03 16 37 H 0.01 0.46 7.66 -2.39 -0.02 0.44 16 38 H 0.42 8.71 8.14 -92.71 -0.75 7.96 16 39 H 0.16 2.03 7.63 -2.91 -0.02 2.01 16 40 H 0.19 -0.25 7.24 -2.91 -0.02 -0.27 16 41 H 0.23 0.19 7.47 -2.91 -0.02 0.17 16 42 H 0.19 0.16 7.32 -2.91 -0.02 0.13 16 Total: -1.00 -81.74 363.35 0.00 -81.75 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -1.28 Total: 10.20 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 5.96 Total: 3.51 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -6.68 Total: -130.05 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.06 Total: -18.52 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.06 Total: 53.11 kcal Total: -81.74 0.00 -81.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.309 kcal (2) G-P(sol) polarization free energy of solvation -81.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds