Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 120.00195 * 2 1 4 4 H 1.48500 * 109.47080 * 239.99796 * 3 2 1 5 5 H 1.48501 * 109.46824 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47354 * 119.99915 * 3 2 1 7 7 C 1.37881 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00172 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99677 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46844 * 180.02562 * 9 7 2 11 11 C 1.53010 * 109.47136 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47136 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47031 * 55.00089 * 12 11 10 14 14 N 1.46898 * 109.47380 * 295.00115 * 12 11 10 15 15 C 1.50700 * 109.47171 * 174.99664 * 12 11 10 16 16 O 1.21305 * 119.99735 * 101.39837 * 15 12 11 17 17 N 1.34773 * 120.00463 * 281.40865 * 15 12 11 18 18 C 1.47308 * 121.15771 * 344.19433 * 17 15 12 19 19 C 1.53537 * 107.57090 * 221.95639 * 18 17 15 20 20 O 1.42954 * 108.80325 * 301.82154 * 19 18 17 21 21 C 1.35959 * 117.78391 * 49.49595 * 20 19 18 22 22 C 1.38937 * 119.64729 * 159.84691 * 21 20 19 23 23 F 1.35098 * 119.97389 * 359.79204 * 22 21 20 24 24 C 1.38338 * 120.05241 * 179.81426 * 22 21 20 25 25 C 1.38317 * 120.28496 * 359.95184 * 24 22 21 26 26 C 1.38386 * 120.04652 * 0.29452 * 25 24 22 27 27 F 1.35101 * 120.06093 * 179.74434 * 26 25 24 28 28 C 1.38823 * 119.88052 * 359.54073 * 26 25 24 29 29 H 0.97001 * 120.00171 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46978 * 60.00422 * 9 7 2 31 31 H 1.09003 * 109.47505 * 300.00164 * 9 7 2 32 32 H 1.09006 * 109.47459 * 60.00452 * 10 9 7 33 33 H 1.09000 * 109.47782 * 299.99951 * 10 9 7 34 34 H 1.09000 * 109.47138 * 60.00081 * 11 10 9 35 35 H 1.08998 * 109.46601 * 299.99871 * 11 10 9 36 36 H 1.00907 * 110.99788 * 300.00114 * 14 12 11 37 37 H 1.00902 * 110.99905 * 63.95016 * 14 12 11 38 38 H 1.09000 * 109.84006 * 102.44018 * 18 17 15 39 39 H 1.09003 * 109.83717 * 341.47155 * 18 17 15 40 40 H 1.09006 * 109.58517 * 182.02587 * 19 18 17 41 41 H 1.09005 * 109.58456 * 61.61327 * 19 18 17 42 42 H 1.07998 * 119.85586 * 179.97438 * 24 22 21 43 43 H 1.07999 * 119.97751 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2452 -3.6620 0.0027 11 6 1.4801 -4.9872 0.0033 12 6 2.4744 -6.1500 0.0050 13 1 3.1579 -6.0424 0.8472 14 7 3.2384 -6.1429 -1.2497 15 6 1.7249 -7.4515 0.1294 16 8 1.5354 -8.1385 -0.8522 17 7 1.2651 -7.8522 1.3312 18 6 1.7582 -7.2420 2.5780 19 6 1.9691 -8.3724 3.5954 20 8 0.7303 -9.0607 3.7829 21 6 0.0522 -9.4586 2.6737 22 6 -0.9003 -10.4650 2.7745 23 9 -1.1450 -11.0454 3.9697 24 6 -1.5979 -10.8737 1.6520 25 6 -1.3529 -10.2836 0.4253 26 6 -0.4024 -9.2839 0.3148 27 9 -0.1592 -8.7109 -0.8843 28 6 0.2979 -8.8680 1.4390 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5575 -0.8880 31 1 0.6246 -2.5563 0.8920 32 1 2.8718 -3.6036 0.8927 33 1 2.8719 -3.6052 -0.8873 34 1 0.8538 -5.0454 -0.8869 35 1 0.8532 -5.0443 0.8931 36 1 2.6267 -6.2414 -2.0461 37 1 3.8002 -5.3082 -1.3262 38 1 1.0227 -6.5337 2.9593 39 1 2.7028 -6.7312 2.3915 40 1 2.3009 -7.9522 4.5450 41 1 2.7198 -9.0674 3.2190 42 1 -2.3373 -11.6566 1.7340 43 1 -1.9007 -10.6062 -0.4477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580050437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -128.982093 kcal Electronic energy + Delta-G solvation = -30162.386771 eV Core-core repulsion = 25651.077725 eV Total energy + Delta-G solvation = -4511.309047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.94888 -49.93227 -42.39647 -40.55669 -38.56666 -37.54204 -36.68723 -35.32415 -33.06767 -32.34469 -30.81949 -30.06756 -29.23900 -27.16142 -25.77450 -24.91683 -23.63698 -22.63258 -21.86577 -20.70356 -19.76669 -19.61805 -18.79867 -18.46453 -17.82069 -17.59198 -17.18656 -17.14960 -16.75361 -16.60980 -16.46305 -16.36074 -16.02148 -15.80337 -15.55269 -15.25822 -15.07892 -14.89810 -14.35551 -14.22818 -14.05029 -13.85805 -13.69232 -13.58646 -13.21378 -12.95592 -12.64621 -12.60655 -12.51561 -12.41887 -12.17182 -11.98600 -11.53349 -11.45787 -11.37134 -11.23707 -10.57221 -10.56577 -9.75516 -9.42372 -9.16262 -8.21153 -6.32784 -0.23727 -0.16676 1.24086 1.35403 1.40394 1.42705 1.50608 1.94062 2.25109 2.40062 2.90238 2.94903 3.12551 3.25260 3.43005 3.56436 3.60708 3.68283 3.80180 3.87076 3.95382 3.99398 4.13146 4.32002 4.42262 4.51281 4.53371 4.58728 4.64504 4.69749 4.88275 4.93513 4.97608 5.11700 5.13030 5.20879 5.44842 5.50125 5.70096 5.80255 5.83564 5.98610 6.05219 6.21698 6.41822 6.81081 6.85390 7.37371 8.90368 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.002632 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.574705 B =10636.745472 C =11035.046544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.092 4.092 11 C -0.134 4.134 12 C 0.096 3.904 13 H 0.131 0.869 14 N -0.830 5.830 15 C 0.497 3.503 16 O -0.500 6.500 17 N -0.559 5.559 18 C 0.053 3.947 19 C 0.046 3.954 20 O -0.310 6.310 21 C 0.078 3.922 22 C 0.075 3.925 23 F -0.129 7.129 24 C -0.099 4.099 25 C -0.125 4.125 26 C 0.069 3.931 27 F -0.110 7.110 28 C 0.061 3.939 29 H 0.263 0.737 30 H -0.018 1.018 31 H -0.010 1.010 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.346 0.654 37 H 0.361 0.639 38 H 0.097 0.903 39 H 0.138 0.862 40 H 0.167 0.833 41 H 0.080 0.920 42 H 0.189 0.811 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -22.628 7.486 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.129 4.129 11 C -0.174 4.174 12 C -0.019 4.019 13 H 0.149 0.851 14 N -0.363 5.363 15 C 0.287 3.713 16 O -0.373 6.373 17 N -0.286 5.286 18 C -0.067 4.067 19 C -0.029 4.029 20 O -0.223 6.223 21 C 0.029 3.971 22 C 0.054 3.946 23 F -0.107 7.107 24 C -0.119 4.119 25 C -0.145 4.145 26 C 0.047 3.953 27 F -0.088 7.088 28 C -0.036 4.036 29 H 0.071 0.929 30 H 0.000 1.000 31 H 0.009 0.991 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.159 0.841 37 H 0.178 0.822 38 H 0.116 0.884 39 H 0.156 0.844 40 H 0.184 0.816 41 H 0.098 0.902 42 H 0.207 0.793 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.329 -23.476 7.381 24.719 hybrid contribution -0.494 2.160 -0.579 2.290 sum 1.835 -21.317 6.802 22.451 Atomic orbital electron populations 1.70096 1.07952 1.27800 1.51764 1.26003 0.95692 1.03491 0.94807 0.85522 0.78252 0.78106 0.79319 1.19205 1.21280 1.18796 1.21699 0.93743 0.92170 1.50357 0.91579 1.18990 0.94475 0.93400 0.94444 1.21425 0.97860 0.91961 1.01688 1.22222 0.98346 0.94747 1.02053 1.21345 0.95011 0.88585 0.96999 0.85136 1.58727 1.27995 1.46549 1.03004 1.21200 0.80137 0.88511 0.81495 1.90866 1.51740 1.55927 1.38809 1.45936 1.39195 1.34931 1.08514 1.23166 1.03975 0.97064 0.82518 1.23745 0.82960 0.93177 1.02972 1.86123 1.36059 1.72750 1.27419 1.18225 0.97338 0.96075 0.85466 1.17032 1.00011 0.94703 0.82822 1.91509 1.93322 1.82606 1.43311 1.21128 1.00479 1.01487 0.88775 1.21163 0.97578 0.95394 1.00317 1.17721 0.98735 0.98558 0.80321 1.91728 1.90838 1.83071 1.43152 1.17813 0.96594 0.95535 0.93665 0.92873 0.99998 0.99124 0.91145 0.92335 0.93666 0.91623 0.84101 0.82248 0.88441 0.84391 0.81569 0.90202 0.79348 0.80683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.47 13.29 21.45 0.28 -56.19 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -29.53 9.11 25.60 0.23 -29.30 16 8 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.21 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.27 4.92 30.60 0.15 -3.12 16 11 C -0.13 -4.11 4.84 30.60 0.15 -3.96 16 12 C 0.10 2.40 2.64 44.17 0.12 2.52 16 13 H 0.13 2.50 6.17 -2.38 -0.01 2.49 16 14 N -0.83 -21.18 8.92 -171.80 -1.53 -22.72 16 15 C 0.50 14.26 6.49 87.66 0.57 14.83 16 16 O -0.50 -17.53 11.80 -3.11 -0.04 -17.56 16 17 N -0.56 -13.76 3.02 -627.49 -1.89 -15.65 16 18 C 0.05 0.86 6.35 86.41 0.55 1.41 16 19 C 0.05 0.61 7.18 72.16 0.52 1.13 16 20 O -0.31 -6.43 10.17 -93.08 -0.95 -7.38 16 21 C 0.08 1.81 6.52 22.63 0.15 1.95 16 22 C 0.07 1.54 7.30 22.46 0.16 1.70 16 23 F -0.13 -2.74 17.09 44.97 0.77 -1.97 16 24 C -0.10 -1.54 10.01 22.31 0.22 -1.32 16 25 C -0.13 -2.32 10.03 22.32 0.22 -2.10 16 26 C 0.07 1.85 6.94 22.45 0.16 2.01 16 27 F -0.11 -3.64 12.18 44.97 0.55 -3.09 16 28 C 0.06 1.57 6.31 38.06 0.24 1.81 16 29 H 0.26 14.98 8.31 -92.71 -0.77 14.20 16 30 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 31 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.06 1.99 6.87 -2.39 -0.02 1.97 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.35 9.61 8.59 -89.69 -0.77 8.84 16 37 H 0.36 8.25 7.55 -89.69 -0.68 7.57 16 38 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.14 1.52 6.00 -2.39 -0.01 1.50 16 40 H 0.17 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -74.99 358.89 2.90 -72.09 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -0.37 Total: 18.13 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: 4.05 Total: -10.75 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -3.14 Total: -94.56 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.98 Total: -24.94 kcal Atomic # 9 Polarization: -6.38 SS G_CDS: 1.32 Total: -5.06 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -74.99 2.90 -72.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580050437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.895 kcal (2) G-P(sol) polarization free energy of solvation -74.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds