Wall clock time and date at job start Sat Apr 11 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00064 * 2 1 4 4 H 1.48502 * 109.47220 * 240.00391 * 3 2 1 5 5 H 1.48505 * 109.46931 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47296 * 120.00222 * 3 2 1 7 7 C 1.37878 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00434 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46801 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46846 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46846 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47398 * 305.00335 * 12 11 10 14 14 N 1.46896 * 109.47053 * 65.00581 * 12 11 10 15 15 C 1.50703 * 109.46912 * 185.00257 * 12 11 10 16 16 O 1.21285 * 119.99889 * 260.00048 * 15 12 11 17 17 N 1.34769 * 119.99927 * 80.00142 * 15 12 11 18 18 C 1.39082 * 119.99979 * 179.97438 * 17 15 12 19 19 N 1.29890 * 125.65266 * 0.02740 * 18 17 15 20 20 N 1.26249 * 117.66276 * 179.97438 * 19 18 17 21 21 C 1.29521 * 116.57854 * 359.97438 * 20 19 18 22 22 C 1.50696 * 126.14626 * 179.97438 * 21 20 19 23 23 H 1.08993 * 110.27926 * 165.66417 * 22 21 20 24 24 C 1.54947 * 110.30642 * 287.86089 * 22 21 20 25 25 C 1.55309 * 100.94026 * 155.35855 * 24 22 21 26 26 C 1.54374 * 102.25309 * 325.86346 * 25 24 22 27 27 O 1.43234 * 107.58879 * 21.35873 * 26 25 24 28 28 S 1.71313 * 125.65320 * 179.71566 * 18 17 15 29 29 H 0.97000 * 120.00271 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47083 * 59.99880 * 9 7 2 31 31 H 1.09001 * 109.47027 * 299.99956 * 9 7 2 32 32 H 1.09002 * 109.47069 * 60.00276 * 10 9 7 33 33 H 1.09001 * 109.47624 * 299.99995 * 10 9 7 34 34 H 1.09002 * 109.46824 * 60.00417 * 11 10 9 35 35 H 1.08991 * 109.47210 * 300.00501 * 11 10 9 36 36 H 1.00900 * 111.00550 * 59.99664 * 14 12 11 37 37 H 1.00896 * 111.00310 * 183.95250 * 14 12 11 38 38 H 0.96997 * 120.00417 * 359.97438 * 17 15 12 39 39 H 1.09001 * 111.12637 * 273.27019 * 24 22 21 40 40 H 1.09001 * 111.12939 * 37.43640 * 24 22 21 41 41 H 1.09007 * 110.84622 * 207.67108 * 25 24 22 42 42 H 1.08999 * 111.02455 * 84.13709 * 25 24 22 43 43 H 1.09002 * 109.83198 * 261.84619 * 26 25 24 44 44 H 1.09001 * 109.83231 * 140.87048 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0031 13 1 3.1575 -6.0428 -0.8459 14 7 3.2395 -6.1423 1.2510 15 6 1.7250 -7.4515 -0.1264 16 8 1.5142 -8.1256 0.8596 17 7 1.2890 -7.8665 -1.3322 18 6 0.5977 -9.0679 -1.4461 19 7 0.3124 -9.8729 -0.4674 20 7 -0.3246 -10.9276 -0.7427 21 6 -0.6365 -11.1082 -1.9868 22 6 -1.3900 -12.2842 -2.5526 23 1 -1.7310 -12.0632 -3.5639 24 6 -0.4945 -13.5487 -2.5490 25 6 -1.5684 -14.6703 -2.5220 26 6 -2.6860 -14.0333 -1.6686 27 8 -2.5064 -12.6129 -1.7106 28 16 -0.0251 -9.7278 -2.8992 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8727 -3.6047 0.8877 33 1 2.8714 -3.6039 -0.8922 34 1 0.8527 -5.0447 -0.8905 35 1 0.8546 -5.0450 0.8894 36 1 2.6284 -6.2404 2.0479 37 1 3.9472 -6.8614 1.2474 38 1 1.4573 -7.3272 -2.1207 39 1 0.1095 -13.6050 -3.4546 40 1 0.1325 -13.5836 -1.6581 41 1 -1.1790 -15.5688 -2.0432 42 1 -1.9268 -14.8928 -3.5271 43 1 -2.6117 -14.3852 -0.6396 44 1 -3.6606 -14.2950 -2.0807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:42 Heat of formation + Delta-G solvation = -20.835495 kcal Electronic energy + Delta-G solvation = -25994.108279 eV Core-core repulsion = 22073.621958 eV Total energy + Delta-G solvation = -3920.486320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.65807 -40.32089 -39.66971 -36.11244 -35.51160 -33.41518 -32.79276 -32.03454 -31.42964 -29.28695 -28.04815 -26.58066 -25.15971 -23.70978 -22.65871 -22.20771 -21.35132 -20.19548 -20.09809 -19.19298 -17.98283 -17.41561 -16.96535 -16.54049 -16.30265 -16.13411 -15.80148 -15.31377 -14.88707 -14.65323 -14.47625 -14.41968 -14.10294 -13.78487 -13.61784 -13.14361 -12.58529 -12.45009 -12.32808 -11.94240 -11.88226 -11.74943 -11.53904 -11.44381 -11.23871 -10.98791 -10.76911 -10.71585 -10.53357 -10.47840 -10.28042 -10.09374 -9.91099 -9.66779 -9.28323 -9.10796 -9.05575 -8.77109 -8.31701 -5.97203 -3.99288 0.04498 0.19262 0.80046 2.07466 2.40046 2.58802 3.32842 3.35133 3.39542 3.42132 3.65723 3.97615 4.14236 4.28419 4.36515 4.45619 4.48453 4.54340 4.67635 4.77515 4.97517 5.04150 5.14217 5.20475 5.22876 5.31257 5.34386 5.38541 5.58329 5.65569 5.80164 5.99235 6.32798 6.42762 6.60052 6.73772 6.93157 7.00427 7.18064 7.36308 7.65566 7.71294 7.85916 8.03467 8.40613 8.46276 9.08053 9.64630 11.14106 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.001793 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.299662 B =15610.787974 C =16116.113778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.099 4.099 11 C -0.107 4.107 12 C 0.087 3.913 13 H 0.108 0.892 14 N -0.807 5.807 15 C 0.475 3.525 16 O -0.473 6.473 17 N -0.626 5.626 18 C 0.237 3.763 19 N -0.274 5.274 20 N -0.200 5.200 21 C -0.013 4.013 22 C 0.171 3.829 23 H 0.098 0.902 24 C -0.144 4.144 25 C -0.154 4.154 26 C 0.050 3.950 27 O -0.361 6.361 28 S 0.120 5.880 29 H 0.260 0.740 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.354 0.646 37 H 0.341 0.659 38 H 0.428 0.572 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.374 -30.239 -11.296 32.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.137 4.137 11 C -0.145 4.145 12 C -0.030 4.030 13 H 0.126 0.874 14 N -0.335 5.335 15 C 0.258 3.742 16 O -0.341 6.341 17 N -0.279 5.279 18 C -0.133 4.133 19 N -0.119 5.119 20 N -0.037 5.037 21 C -0.295 4.295 22 C 0.109 3.891 23 H 0.115 0.885 24 C -0.183 4.183 25 C -0.191 4.191 26 C -0.027 4.027 27 O -0.279 6.279 28 S 0.360 5.640 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.169 0.831 37 H 0.154 0.846 38 H 0.267 0.733 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.491 -29.631 -10.235 31.352 hybrid contribution 0.143 0.156 -0.411 0.462 sum -0.348 -29.475 -10.646 31.340 Atomic orbital electron populations 1.69954 1.06058 1.26638 1.50985 1.25033 0.94835 0.99244 0.95436 0.86667 0.79570 0.83197 0.78606 1.20295 1.21377 1.20229 1.21227 0.93038 0.91062 1.50361 0.92670 1.19124 0.94086 0.91593 0.97012 1.21551 0.98804 0.92012 1.01350 1.21734 0.96506 0.93923 1.02360 1.21870 0.95757 0.89315 0.96032 0.87417 1.59053 1.17173 1.54191 1.03102 1.23420 0.79337 0.89579 0.81838 1.90836 1.52414 1.55278 1.35528 1.43537 1.53780 1.17401 1.13199 1.26206 0.99225 0.94579 0.93246 1.71617 1.15155 0.99582 1.25542 1.71386 1.07563 1.10788 1.13945 1.29677 1.07019 1.00610 0.92212 1.21163 0.85692 0.89133 0.93126 0.88459 1.23343 0.98244 0.92217 1.04525 1.23134 0.95526 0.99068 1.01410 1.23207 0.98559 0.80245 1.00679 1.88551 1.47697 1.22609 1.69086 1.84705 1.52705 1.17205 1.09417 0.93015 0.96936 0.96712 0.91651 0.93493 0.91761 0.91517 0.83141 0.84631 0.73319 0.89023 0.89259 0.89385 0.90017 0.90719 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 10 C -0.10 -1.93 5.04 -26.73 -0.13 -2.06 16 11 C -0.11 -1.65 4.84 -26.73 -0.13 -1.78 16 12 C 0.09 1.07 3.15 -68.87 -0.22 0.86 16 13 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 14 N -0.81 -10.25 8.44 -5.65 -0.05 -10.29 16 15 C 0.48 6.33 7.03 -10.99 -0.08 6.25 16 16 O -0.47 -8.12 14.93 5.55 0.08 -8.04 16 17 N -0.63 -6.81 5.41 -12.91 -0.07 -6.88 16 18 C 0.24 2.97 8.14 -87.05 -0.71 2.27 16 19 N -0.27 -4.39 9.74 29.97 0.29 -4.10 16 20 N -0.20 -2.95 11.65 33.58 0.39 -2.56 16 21 C -0.01 -0.14 6.73 -13.25 -0.09 -0.23 16 22 C 0.17 1.37 4.00 -26.86 -0.11 1.26 16 23 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 24 C -0.14 -0.82 6.56 -24.48 -0.16 -0.98 16 25 C -0.15 -0.64 7.02 -24.79 -0.17 -0.81 16 26 C 0.05 0.32 7.79 37.88 0.30 0.61 16 27 O -0.36 -3.67 11.02 -35.23 -0.39 -4.05 16 28 S 0.12 1.04 23.31 -107.50 -2.51 -1.46 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 1.31 7.75 -51.93 -0.40 0.91 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.35 4.77 8.58 -39.29 -0.34 4.43 16 37 H 0.34 3.71 9.06 -39.29 -0.36 3.36 16 38 H 0.43 3.03 8.82 -40.82 -0.36 2.67 16 39 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.65 8.05 -51.93 -0.42 0.23 16 41 H 0.09 0.27 8.14 -51.92 -0.42 -0.15 16 42 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -36.98 384.52 -9.28 -46.25 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -6.49 Total: 2.67 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.05 Total: -7.70 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 1.30 Total: -50.13 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.31 Total: -12.09 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.51 Total: -1.46 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.98 -9.28 -46.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.419 kcal (2) G-P(sol) polarization free energy of solvation -36.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds