Wall clock time and date at job start Sat Apr 11 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00064 * 2 1 4 4 H 1.48502 * 109.47220 * 240.00391 * 3 2 1 5 5 H 1.48505 * 109.46931 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47296 * 120.00222 * 3 2 1 7 7 C 1.37878 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00434 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46801 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46846 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46846 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47398 * 305.00335 * 12 11 10 14 14 N 1.46896 * 109.47053 * 65.00581 * 12 11 10 15 15 C 1.50703 * 109.46912 * 185.00257 * 12 11 10 16 16 O 1.21285 * 119.99889 * 260.00048 * 15 12 11 17 17 N 1.34769 * 119.99927 * 80.00142 * 15 12 11 18 18 C 1.39082 * 119.99979 * 179.97438 * 17 15 12 19 19 N 1.29890 * 125.65266 * 0.02740 * 18 17 15 20 20 N 1.26249 * 117.66276 * 179.97438 * 19 18 17 21 21 C 1.29521 * 116.57854 * 359.97438 * 20 19 18 22 22 C 1.50696 * 126.14626 * 179.97438 * 21 20 19 23 23 H 1.08993 * 110.27926 * 165.66417 * 22 21 20 24 24 C 1.54947 * 110.30642 * 287.86089 * 22 21 20 25 25 C 1.55309 * 100.94026 * 155.35855 * 24 22 21 26 26 C 1.54374 * 102.25309 * 325.86346 * 25 24 22 27 27 O 1.43234 * 107.58879 * 21.35873 * 26 25 24 28 28 S 1.71313 * 125.65320 * 179.71566 * 18 17 15 29 29 H 0.97000 * 120.00271 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47083 * 59.99880 * 9 7 2 31 31 H 1.09001 * 109.47027 * 299.99956 * 9 7 2 32 32 H 1.09002 * 109.47069 * 60.00276 * 10 9 7 33 33 H 1.09001 * 109.47624 * 299.99995 * 10 9 7 34 34 H 1.09002 * 109.46824 * 60.00417 * 11 10 9 35 35 H 1.08991 * 109.47210 * 300.00501 * 11 10 9 36 36 H 1.00900 * 111.00550 * 59.99664 * 14 12 11 37 37 H 1.00896 * 111.00310 * 183.95250 * 14 12 11 38 38 H 0.96997 * 120.00417 * 359.97438 * 17 15 12 39 39 H 1.09001 * 111.12637 * 273.27019 * 24 22 21 40 40 H 1.09001 * 111.12939 * 37.43640 * 24 22 21 41 41 H 1.09007 * 110.84622 * 207.67108 * 25 24 22 42 42 H 1.08999 * 111.02455 * 84.13709 * 25 24 22 43 43 H 1.09002 * 109.83198 * 261.84619 * 26 25 24 44 44 H 1.09001 * 109.83231 * 140.87048 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0031 13 1 3.1575 -6.0428 -0.8459 14 7 3.2395 -6.1423 1.2510 15 6 1.7250 -7.4515 -0.1264 16 8 1.5142 -8.1256 0.8596 17 7 1.2890 -7.8665 -1.3322 18 6 0.5977 -9.0679 -1.4461 19 7 0.3124 -9.8729 -0.4674 20 7 -0.3246 -10.9276 -0.7427 21 6 -0.6365 -11.1082 -1.9868 22 6 -1.3900 -12.2842 -2.5526 23 1 -1.7310 -12.0632 -3.5639 24 6 -0.4945 -13.5487 -2.5490 25 6 -1.5684 -14.6703 -2.5220 26 6 -2.6860 -14.0333 -1.6686 27 8 -2.5064 -12.6129 -1.7106 28 16 -0.0251 -9.7278 -2.8992 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8727 -3.6047 0.8877 33 1 2.8714 -3.6039 -0.8922 34 1 0.8527 -5.0447 -0.8905 35 1 0.8546 -5.0450 0.8894 36 1 2.6284 -6.2404 2.0479 37 1 3.9472 -6.8614 1.2474 38 1 1.4573 -7.3272 -2.1207 39 1 0.1095 -13.6050 -3.4546 40 1 0.1325 -13.5836 -1.6581 41 1 -1.1790 -15.5688 -2.0432 42 1 -1.9268 -14.8928 -3.5271 43 1 -2.6117 -14.3852 -0.6396 44 1 -3.6606 -14.2950 -2.0807 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580051033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:41 Heat of formation + Delta-G solvation = -49.613275 kcal Electronic energy + Delta-G solvation = -25995.356177 eV Core-core repulsion = 22073.621958 eV Total energy + Delta-G solvation = -3921.734219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.58797 -41.28980 -40.29418 -37.34216 -36.59119 -35.27278 -33.38169 -33.15429 -32.68782 -30.16215 -29.45582 -27.64580 -26.44163 -24.86378 -23.79687 -22.63248 -22.41842 -21.68813 -21.04975 -20.12525 -18.83989 -18.43331 -18.26155 -17.62857 -17.36306 -17.10322 -16.67721 -16.47159 -16.22966 -15.77923 -15.68139 -15.40357 -15.00474 -14.60127 -14.42330 -14.30263 -14.22245 -13.68665 -13.27952 -13.09685 -12.87133 -12.78252 -12.54314 -12.50598 -12.43209 -12.30421 -12.23212 -11.92695 -11.82454 -11.57086 -11.38959 -11.26506 -11.18645 -10.98038 -10.81753 -10.57961 -10.50430 -9.98177 -9.85522 -8.16055 -6.26442 -0.79233 -0.61129 -0.04141 1.09175 1.42317 1.45453 1.52559 1.53491 1.64562 2.44206 2.72819 2.99198 3.17228 3.22287 3.47546 3.57599 3.74747 3.83299 3.90245 3.91974 4.09058 4.12597 4.28170 4.39742 4.48398 4.63316 4.74935 4.77542 4.84481 4.89518 4.89634 4.98917 5.13050 5.21527 5.26552 5.35486 5.61988 5.75425 5.85465 5.91364 5.95239 6.01742 6.30775 6.38622 6.69867 6.91757 7.42710 7.52237 8.95412 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.001793 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.299662 B =15610.787974 C =16116.113778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.963 3.037 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.019 3.981 10 C -0.083 4.083 11 C -0.099 4.099 12 C 0.100 3.900 13 H 0.142 0.858 14 N -0.813 5.813 15 C 0.481 3.519 16 O -0.517 6.517 17 N -0.613 5.613 18 C 0.206 3.794 19 N -0.323 5.323 20 N -0.248 5.248 21 C -0.016 4.016 22 C 0.161 3.839 23 H 0.129 0.871 24 C -0.141 4.141 25 C -0.142 4.142 26 C 0.040 3.960 27 O -0.397 6.397 28 S 0.219 5.781 29 H 0.262 0.738 30 H -0.006 1.006 31 H -0.018 1.018 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.347 0.653 37 H 0.352 0.648 38 H 0.446 0.554 39 H 0.119 0.881 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.839 -30.959 -14.244 34.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.788 3.212 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.577 4.577 8 H 0.080 0.920 9 C -0.018 4.018 10 C -0.121 4.121 11 C -0.137 4.137 12 C -0.017 4.017 13 H 0.160 0.840 14 N -0.342 5.342 15 C 0.264 3.736 16 O -0.387 6.387 17 N -0.268 5.268 18 C -0.164 4.164 19 N -0.168 5.168 20 N -0.084 5.084 21 C -0.299 4.299 22 C 0.099 3.901 23 H 0.147 0.853 24 C -0.181 4.181 25 C -0.180 4.180 26 C -0.036 4.036 27 O -0.316 6.316 28 S 0.460 5.540 29 H 0.070 0.930 30 H 0.012 0.988 31 H 0.000 1.000 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.161 0.839 37 H 0.166 0.834 38 H 0.288 0.712 39 H 0.137 0.863 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.082 0.918 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.742 -30.365 -13.232 33.131 hybrid contribution -0.323 0.312 0.418 0.613 sum 0.420 -30.053 -12.815 32.674 Atomic orbital electron populations 1.70097 1.07828 1.27652 1.52061 1.25992 0.95735 1.03386 0.94974 0.85531 0.78255 0.78214 0.79227 1.18812 1.21160 1.19447 1.21720 0.93653 0.92404 1.49938 0.91976 1.19074 0.94649 0.93562 0.94484 1.21283 0.97494 0.91576 1.01708 1.21541 0.96743 0.93301 1.02147 1.21754 0.95305 0.87461 0.97133 0.84003 1.59079 1.17360 1.54721 1.03046 1.23455 0.78735 0.89442 0.81926 1.90827 1.54038 1.56645 1.37194 1.43324 1.53046 1.17196 1.13260 1.26440 0.99994 0.94876 0.95099 1.71556 1.16425 1.00683 1.28143 1.71357 1.09504 1.11353 1.16200 1.30431 1.05528 1.01930 0.92034 1.21645 0.85657 0.89063 0.93722 0.85335 1.23363 0.98331 0.91612 1.04760 1.23139 0.93942 0.98571 1.02331 1.23408 1.00381 0.78919 1.00922 1.88507 1.48447 1.24718 1.69939 1.84258 1.50223 1.14209 1.05326 0.92962 0.98756 1.00004 0.92411 0.91813 0.90314 0.93646 0.83890 0.83371 0.71174 0.86269 0.91588 0.88338 0.87597 0.91780 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.37 13.29 21.45 0.28 -57.09 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.00 4.97 29.85 0.15 1.15 16 10 C -0.08 -3.17 5.04 30.60 0.15 -3.01 16 11 C -0.10 -3.01 4.84 30.60 0.15 -2.86 16 12 C 0.10 2.34 3.15 44.17 0.14 2.47 16 13 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 14 N -0.81 -20.14 8.44 -171.80 -1.45 -21.59 16 15 C 0.48 12.59 7.03 87.66 0.62 13.21 16 16 O -0.52 -18.24 14.93 -3.05 -0.05 -18.29 16 17 N -0.61 -12.61 5.41 -313.16 -1.69 -14.30 16 18 C 0.21 5.04 8.14 179.10 1.46 6.50 16 19 N -0.32 -10.65 9.74 -59.09 -0.58 -11.23 16 20 N -0.25 -7.53 11.65 -47.67 -0.56 -8.09 16 21 C -0.02 -0.34 6.73 88.45 0.60 0.25 16 22 C 0.16 2.32 4.00 30.51 0.12 2.44 16 23 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 24 C -0.14 -1.35 6.56 32.05 0.21 -1.14 16 25 C -0.14 -0.85 7.02 31.85 0.22 -0.63 16 26 C 0.04 0.48 7.79 72.45 0.56 1.04 16 27 O -0.40 -7.93 11.02 -148.98 -1.64 -9.57 16 28 S 0.22 3.33 23.31 -56.49 -1.32 2.01 16 29 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 30 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H -0.02 -1.07 8.14 -2.39 -0.02 -1.08 16 32 H 0.06 2.29 7.75 -2.39 -0.02 2.27 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.35 9.53 8.58 -89.69 -0.77 8.76 16 37 H 0.35 7.35 9.06 -89.70 -0.81 6.54 16 38 H 0.45 5.24 8.82 -92.71 -0.82 4.42 16 39 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.07 0.95 8.05 -2.39 -0.02 0.93 16 41 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 42 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -84.50 384.52 -1.23 -85.73 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -1.34 Total: 16.67 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 5.08 Total: -10.57 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -3.99 Total: -112.29 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.69 Total: -27.86 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.32 Total: 2.01 kcal Total: -84.50 -1.23 -85.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.117 kcal (2) G-P(sol) polarization free energy of solvation -84.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds