Wall clock time and date at job start Sat Apr 11 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31501 * 1 3 3 Si 1.86798 * 120.00345 * 2 1 4 4 H 1.48494 * 109.47476 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46980 * 300.00375 * 3 2 1 6 6 H 1.48501 * 109.47015 * 59.99865 * 3 2 1 7 7 C 1.37883 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99961 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99675 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.46839 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00364 * 66.04453 * 10 9 7 12 12 C 1.50705 * 109.47354 * 199.55759 * 11 10 9 13 13 C 1.34510 * 125.78799 * 84.86286 * 12 11 10 14 14 C 1.41389 * 106.83680 * 179.97438 * 13 12 11 15 15 C 1.34510 * 106.84314 * 0.02562 * 14 13 12 16 16 O 1.34305 * 108.42097 * 359.73659 * 15 14 13 17 17 C 1.46905 * 110.99944 * 190.00128 * 10 9 7 18 18 C 1.50697 * 109.47107 * 75.82477 * 17 10 9 19 19 C 1.38311 * 120.35952 * 264.43383 * 18 17 10 20 20 N 1.31883 * 121.01648 * 179.97438 * 19 18 17 21 21 C 1.31749 * 121.85390 * 0.02562 * 20 19 18 22 22 C 1.39254 * 120.59966 * 359.97438 * 21 20 19 23 23 C 1.48467 * 120.53218 * 180.02562 * 22 21 20 24 24 N 1.34051 * 126.67613 * 179.68842 * 23 22 21 25 25 N 1.28986 * 107.27164 * 179.89341 * 24 23 22 26 26 N 1.28728 * 108.93966 * 0.37689 * 25 24 23 27 27 H 0.96998 * 125.34106 * 179.76729 * 26 25 24 28 28 N 1.28875 * 109.31931 * 359.76015 * 26 25 24 29 29 C 1.38425 * 120.36141 * 84.41602 * 18 17 10 30 30 H 0.97002 * 120.00246 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.47038 * 60.00408 * 9 7 2 32 32 H 1.09000 * 109.47104 * 299.99963 * 9 7 2 33 33 H 1.08997 * 109.47370 * 319.55671 * 11 10 9 34 34 H 1.08999 * 109.47048 * 79.55847 * 11 10 9 35 35 H 1.07999 * 126.58210 * 0.03988 * 13 12 11 36 36 H 1.08000 * 126.57181 * 179.97438 * 14 13 12 37 37 H 1.08001 * 125.79003 * 180.02562 * 15 14 13 38 38 H 1.08996 * 109.46867 * 315.82244 * 17 10 9 39 39 H 1.09005 * 109.47279 * 195.82280 * 17 10 9 40 40 H 1.07998 * 119.49002 * 0.02562 * 19 18 17 41 41 H 1.08002 * 119.70267 * 180.27593 * 21 20 19 42 42 H 1.07997 * 120.84381 * 359.97438 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 2.9708 -3.6540 1.2527 12 6 4.2271 -4.4613 1.0497 13 6 5.3885 -3.9978 0.5540 14 6 6.2906 -5.0864 0.5384 15 6 5.6264 -6.1501 1.0249 16 8 4.3786 -5.7643 1.3380 17 6 1.5210 -4.8935 -0.2387 18 6 1.1644 -5.0079 -1.6984 19 6 -0.0946 -4.6444 -2.1410 20 7 -0.4204 -4.7387 -3.4155 21 6 0.4301 -5.1803 -4.3197 22 6 1.7171 -5.5659 -3.9537 23 6 2.6744 -6.0627 -4.9740 24 7 3.9374 -6.4587 -4.7613 25 7 4.4235 -6.8169 -5.9011 26 7 3.5250 -6.6539 -6.8084 27 1 3.6391 -6.8465 -7.7522 28 7 2.4498 -6.1948 -6.2661 29 6 2.0933 -5.4776 -2.6109 30 1 -0.4850 0.8400 0.0004 31 1 0.6239 -2.5567 -0.8903 32 1 0.6246 -2.5571 0.8897 33 1 3.2352 -2.6388 1.5482 34 1 2.3658 -4.1139 2.0340 35 1 5.5930 -2.9877 0.2310 36 1 7.3160 -5.0676 0.1999 37 1 6.0296 -7.1444 1.1477 38 1 0.6124 -4.9364 0.3618 39 1 2.1798 -5.7161 0.0399 40 1 -0.8218 -4.2769 -1.4321 41 1 0.1279 -5.2391 -5.3549 42 1 3.0838 -5.7678 -2.2931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:55 Heat of formation + Delta-G solvation = 164.378889 kcal Electronic energy + Delta-G solvation = -28720.677341 eV Core-core repulsion = 24705.071319 eV Total energy + Delta-G solvation = -4015.606022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.49340 -43.32405 -41.30393 -38.47787 -35.63905 -34.88933 -34.78384 -33.99426 -33.54954 -32.13502 -31.20526 -29.20188 -27.35950 -26.14114 -25.82382 -25.42253 -24.01374 -22.94496 -22.53486 -21.82683 -21.05107 -20.20168 -18.53941 -18.17393 -18.14045 -18.04273 -17.52683 -17.07601 -16.85857 -16.57579 -16.05983 -15.64512 -15.41396 -15.09651 -14.80264 -14.58736 -14.11339 -14.07793 -13.76563 -13.61000 -13.46567 -13.40904 -13.15116 -13.05358 -12.95384 -12.66522 -12.51565 -12.46261 -12.41289 -12.24476 -12.18391 -11.95478 -11.26414 -10.70449 -10.60642 -10.57590 -10.55958 -9.85274 -9.26792 -9.05393 -8.16573 -6.23977 -0.47810 0.12576 0.21845 0.94248 1.23794 1.39622 1.40885 1.43513 1.54694 1.85639 2.21311 2.42515 2.55344 2.74348 3.06797 3.17857 3.42740 3.52857 3.79774 3.87489 3.92927 3.96761 4.04592 4.22745 4.28051 4.30007 4.44171 4.49728 4.59490 4.68104 4.71517 4.78887 5.03891 5.04739 5.18340 5.19834 5.27233 5.29893 5.37594 5.57060 5.61093 5.68597 5.75491 6.07175 6.25734 6.37049 6.58115 6.87240 6.90751 7.08429 7.44739 8.94022 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007814 B = 0.004172 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3582.627124 B = 6709.868113 C = 8506.279046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.208 3.792 10 N -0.532 5.532 11 C 0.143 3.857 12 C -0.010 4.010 13 C -0.209 4.209 14 C -0.224 4.224 15 C -0.041 4.041 16 O -0.190 6.190 17 C 0.097 3.903 18 C -0.118 4.118 19 C 0.123 3.877 20 N -0.498 5.498 21 C 0.135 3.865 22 C -0.080 4.080 23 C 0.218 3.782 24 N -0.291 5.291 25 N -0.053 5.053 26 N -0.196 5.196 27 H 0.496 0.504 28 N -0.288 5.288 29 C -0.012 4.012 30 H 0.263 0.737 31 H 0.020 0.980 32 H -0.025 1.025 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.135 0.865 36 H 0.165 0.835 37 H 0.239 0.761 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.158 0.842 41 H 0.183 0.817 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.972 -16.386 -8.000 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.083 3.917 10 N -0.257 5.257 11 C 0.016 3.984 12 C -0.060 4.060 13 C -0.229 4.229 14 C -0.243 4.243 15 C -0.108 4.108 16 O -0.087 6.087 17 C -0.031 4.031 18 C -0.120 4.120 19 C -0.034 4.034 20 N -0.206 5.206 21 C -0.025 4.025 22 C -0.085 4.085 23 C -0.062 4.062 24 N -0.163 5.163 25 N -0.048 5.048 26 N -0.048 5.048 27 H 0.355 0.645 28 N -0.140 5.140 29 C -0.040 4.040 30 H 0.072 0.928 31 H 0.038 0.962 32 H -0.007 1.007 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.153 0.847 36 H 0.182 0.818 37 H 0.255 0.745 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.175 0.825 41 H 0.200 0.800 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.675 -16.356 -8.730 20.066 hybrid contribution 0.298 1.086 0.356 1.181 sum 7.973 -15.270 -8.374 19.153 Atomic orbital electron populations 1.70049 1.07351 1.27586 1.51757 1.25705 0.95565 1.02464 0.95086 0.85543 0.79170 0.79675 0.77520 1.18975 1.21064 1.20384 1.21457 0.93543 0.91079 1.49768 0.92092 1.19462 0.89884 0.87695 0.94672 1.61939 1.27242 1.02785 1.33707 1.20336 0.88945 0.98123 0.91013 1.22365 0.97745 0.81908 1.03980 1.21702 0.93936 1.01234 1.06070 1.22070 1.02101 0.92716 1.07412 1.24711 0.81682 1.01546 1.02886 1.83991 1.32736 1.25236 1.66726 1.20979 0.98344 0.92962 0.90812 1.20699 0.94368 0.99586 0.97367 1.22973 0.95222 0.92649 0.92523 1.67791 1.36097 1.14323 1.02373 1.23108 0.87685 0.91547 1.00127 1.18272 0.93465 1.05851 0.90916 1.23328 0.91847 1.01411 0.89640 1.76120 1.07985 1.15798 1.16419 1.78853 1.17454 1.15890 0.92628 1.47773 1.04236 1.38487 1.14276 0.64462 1.74873 1.11914 1.18540 1.08704 1.21436 0.99244 0.92600 0.90739 0.92829 0.96204 1.00710 0.88273 0.93260 0.84688 0.81787 0.74460 0.93048 0.89237 0.82489 0.79995 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.92 13.28 21.45 0.28 -53.63 16 2 C 0.01 0.58 5.46 84.66 0.46 1.04 16 3 Si 0.96 43.71 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.52 -28.10 8.24 25.60 0.21 -27.89 16 8 H 0.06 3.27 7.31 -2.91 -0.02 3.25 16 9 C 0.21 10.27 4.54 85.56 0.39 10.66 16 10 N -0.53 -21.51 4.33 -909.95 -3.94 -25.46 16 11 C 0.14 5.31 5.33 85.56 0.46 5.77 16 12 C -0.01 -0.33 6.15 24.83 0.15 -0.18 16 13 C -0.21 -6.85 10.81 22.19 0.24 -6.61 16 14 C -0.22 -5.82 10.91 22.19 0.24 -5.58 16 15 C -0.04 -0.96 12.09 66.97 0.81 -0.15 16 16 O -0.19 -5.63 10.19 -2.55 -0.03 -5.66 16 17 C 0.10 3.29 4.97 85.55 0.42 3.71 16 18 C -0.12 -3.95 5.04 -19.80 -0.10 -4.05 16 19 C 0.12 4.25 9.58 84.70 0.81 5.06 16 20 N -0.50 -16.76 10.35 -195.00 -2.02 -18.78 16 21 C 0.14 3.94 10.87 84.95 0.92 4.87 16 22 C -0.08 -2.35 5.89 -19.94 -0.12 -2.47 16 23 C 0.22 5.88 7.95 137.38 1.09 6.97 16 24 N -0.29 -8.08 12.31 -52.18 -0.64 -8.72 16 25 N -0.05 -1.16 13.47 37.02 0.50 -0.66 16 26 N -0.20 -3.00 7.90 37.02 0.29 -2.71 16 27 H 0.50 2.12 8.96 -347.54 -3.12 -1.00 16 28 N -0.29 -6.13 12.11 -52.13 -0.63 -6.76 16 29 C -0.01 -0.38 9.54 22.68 0.22 -0.16 16 30 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.02 1.06 6.35 -2.39 -0.02 1.04 16 32 H -0.02 -1.30 8.12 -2.39 -0.02 -1.32 16 33 H 0.10 4.03 6.58 -2.39 -0.02 4.01 16 34 H 0.05 1.70 8.00 -2.39 -0.02 1.68 16 35 H 0.14 4.61 8.06 -2.91 -0.02 4.58 16 36 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 37 H 0.24 3.14 8.06 -2.91 -0.02 3.12 16 38 H 0.05 1.68 7.91 -2.39 -0.02 1.66 16 39 H 0.09 2.78 6.90 -2.38 -0.02 2.77 16 40 H 0.16 5.36 7.98 -2.91 -0.02 5.33 16 41 H 0.18 4.29 7.90 -2.91 -0.02 4.26 16 42 H 0.14 4.49 7.97 -2.91 -0.02 4.47 16 Total: -1.00 -69.70 368.62 0.02 -69.68 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -2.03 Total: 15.97 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 6.21 Total: -9.00 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -6.16 Total: -116.73 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.03 Total: -5.66 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -69.70 0.02 -69.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.057 kcal (2) G-P(sol) polarization free energy of solvation -69.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds