Wall clock time and date at job start Sat Apr 11 2020 05:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 119.99955 * 2 1 4 4 H 1.48498 * 109.47451 * 239.99776 * 3 2 1 5 5 H 1.48499 * 109.47599 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47090 * 119.99946 * 3 2 1 7 7 C 1.37878 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99814 * 0.02562 * 7 2 1 10 10 O 1.42902 * 110.91369 * 297.54592 * 9 7 2 11 11 C 1.55448 * 111.11612 * 173.55627 * 9 7 2 12 12 C 1.54321 * 102.96961 * 206.45980 * 11 9 7 13 13 N 1.47026 * 107.26791 * 22.19024 * 12 11 9 14 14 C 1.34781 * 125.64203 * 181.03648 * 13 12 11 15 15 O 1.21349 * 119.99483 * 180.02562 * 14 13 12 16 16 C 1.49448 * 120.00387 * 0.02562 * 14 13 12 17 17 O 1.21349 * 120.00131 * 0.02562 * 16 14 13 18 18 N 1.34775 * 119.99874 * 179.97438 * 16 14 13 19 19 C 1.46504 * 119.99893 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.46943 * 180.02562 * 19 18 16 21 21 C 1.50697 * 112.85048 * 50.33546 * 20 19 18 22 22 O 1.20827 * 120.00407 * 129.66374 * 21 20 19 23 23 O 1.34229 * 119.99891 * 309.66592 * 21 20 19 24 24 C 1.53786 * 113.61709 * 279.13622 * 20 19 18 25 25 C 1.53951 * 87.01855 * 220.05230 * 24 20 19 26 26 C 1.53779 * 113.61180 * 181.52931 * 20 19 18 27 27 C 1.47419 * 108.70576 * 1.06162 * 13 12 11 28 28 H 0.97004 * 120.00000 * 0.02562 * 1 2 3 29 29 H 0.96699 * 114.00301 * 62.45375 * 10 9 7 30 30 H 1.08998 * 110.70855 * 88.08784 * 11 9 7 31 31 H 1.08997 * 110.70436 * 324.83532 * 11 9 7 32 32 H 1.08998 * 109.88101 * 262.77542 * 12 11 9 33 33 H 1.08997 * 110.01327 * 141.67909 * 12 11 9 34 34 H 0.96996 * 120.00007 * 0.02562 * 18 16 14 35 35 H 1.09001 * 109.46890 * 300.00441 * 19 18 16 36 36 H 1.08998 * 109.46853 * 59.99958 * 19 18 16 37 37 H 0.96704 * 116.99541 * 179.97438 * 23 21 20 38 38 H 1.08997 * 113.60709 * 334.57269 * 24 20 19 39 39 H 1.08993 * 113.61314 * 105.47169 * 24 20 19 40 40 H 1.09003 * 113.53626 * 270.80891 * 25 24 20 41 41 H 1.08997 * 113.74314 * 139.94881 * 25 24 20 42 42 H 1.09006 * 113.61660 * 254.52901 * 26 20 19 43 43 H 1.09000 * 113.61818 * 25.43577 * 26 20 19 44 44 H 1.09002 * 110.36926 * 94.70918 * 27 13 12 45 45 H 1.08995 * 110.36556 * 216.92202 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 8 0.4608 -2.6319 1.1838 11 6 2.2188 -3.7047 -0.1616 12 6 1.3242 -4.7824 -0.8093 13 7 0.2045 -4.0866 -1.4603 14 6 -0.8098 -4.6783 -2.1220 15 8 -1.6838 -4.0017 -2.6229 16 6 -0.8580 -6.1674 -2.2389 17 8 0.0158 -6.8440 -1.7376 18 7 -1.8725 -6.7589 -2.9001 19 6 -1.9201 -8.2188 -3.0142 20 6 -3.1631 -8.6281 -3.8068 21 6 -3.3009 -7.8791 -5.1071 22 8 -3.4923 -8.4839 -6.1354 23 8 -3.2109 -6.5399 -5.1230 24 6 -4.4512 -8.6461 -2.9668 25 6 -4.8323 -9.9304 -3.7253 26 6 -3.3273 -10.1502 -3.9523 27 6 0.3752 -2.6348 -1.2700 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2256 -1.9571 1.2763 30 1 2.5838 -4.0392 0.8095 31 1 3.0491 -3.4466 -0.8188 32 1 0.9451 -5.4590 -0.0433 33 1 1.8932 -5.3435 -1.5506 34 1 -2.5712 -6.2182 -3.3005 35 1 -1.0276 -8.5721 -3.5305 36 1 -1.9622 -8.6598 -2.0183 37 1 -3.3054 -6.1037 -5.9809 38 1 -4.2760 -8.8033 -1.9025 39 1 -5.1154 -7.8057 -3.1679 40 1 -5.3897 -9.7446 -4.6434 41 1 -5.2946 -10.6909 -3.0961 42 1 -3.0856 -10.5223 -4.9479 43 1 -2.8445 -10.7194 -3.1579 44 1 0.8830 -2.1966 -2.1293 45 1 -0.5919 -2.1559 -1.1171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606016.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:59 Heat of formation + Delta-G solvation = -178.501708 kcal Electronic energy + Delta-G solvation = -30541.879513 eV Core-core repulsion = 26139.510651 eV Total energy + Delta-G solvation = -4402.368863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55705 -40.19464 -38.72144 -38.24610 -37.14393 -36.50089 -34.78491 -33.98248 -32.25478 -30.20082 -29.39046 -27.89380 -26.28034 -26.04057 -25.01961 -23.60547 -22.54033 -21.47846 -20.00695 -19.72670 -19.52017 -18.22230 -17.39072 -17.11792 -16.82599 -16.46881 -16.21514 -15.75719 -15.32139 -15.15265 -14.99065 -14.78235 -14.58541 -14.44488 -14.12492 -13.54284 -13.06325 -12.95497 -12.93185 -12.84535 -12.68348 -12.29886 -12.25114 -11.91974 -11.66817 -11.50423 -11.47522 -11.13965 -11.04146 -10.99055 -10.88542 -10.79712 -10.76243 -10.57242 -10.50412 -10.21431 -9.37421 -9.22973 -9.12293 -8.70408 -8.41089 -7.89062 -6.30166 -4.39677 1.74949 1.82145 2.49041 2.65518 3.21316 3.27023 3.29062 3.62552 3.71710 3.93909 4.04582 4.21601 4.25762 4.29856 4.61372 4.80248 4.94564 4.97588 5.16309 5.22497 5.29933 5.37815 5.46609 5.49890 5.52378 5.56918 5.79696 5.83312 5.85252 6.06722 6.12633 6.21386 6.35550 6.51893 6.73184 6.80949 6.85247 7.17270 7.26412 7.32272 7.54374 7.71626 7.92059 8.01040 8.07717 8.47378 8.64278 9.27666 9.36158 10.76984 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024502 B = 0.002489 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.498671 B =11246.382419 C =11706.413466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.581 6.581 11 C -0.122 4.122 12 C 0.112 3.888 13 N -0.575 5.575 14 C 0.508 3.492 15 O -0.535 6.535 16 C 0.510 3.490 17 O -0.520 6.520 18 N -0.704 5.704 19 C 0.138 3.862 20 C -0.101 4.101 21 C 0.505 3.495 22 O -0.507 6.507 23 O -0.507 6.507 24 C -0.120 4.120 25 C -0.143 4.143 26 C -0.110 4.110 27 C 0.092 3.908 28 H 0.271 0.729 29 H 0.381 0.619 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.420 0.580 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.417 0.583 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.782 -17.193 -7.289 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.389 6.389 11 C -0.160 4.160 12 C -0.011 4.011 13 N -0.307 5.307 14 C 0.290 3.710 15 O -0.414 6.414 16 C 0.291 3.709 17 O -0.395 6.395 18 N -0.363 5.363 19 C 0.014 3.986 20 C -0.103 4.103 21 C 0.347 3.653 22 O -0.395 6.395 23 O -0.320 6.320 24 C -0.157 4.157 25 C -0.181 4.181 26 C -0.148 4.148 27 C -0.029 4.029 28 H 0.081 0.919 29 H 0.230 0.770 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.262 0.738 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.278 0.722 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.451 -18.085 -7.059 20.795 hybrid contribution -0.283 1.978 -1.001 2.235 sum -7.734 -16.107 -8.060 19.602 Atomic orbital electron populations 1.69704 1.05987 1.28057 1.49469 1.25087 0.95065 0.99785 0.93317 0.86440 0.79507 0.81999 0.78834 1.20028 1.21104 1.19971 1.21417 0.93683 0.89917 1.52481 0.91442 1.19688 0.86579 0.91799 0.81101 1.86129 1.51462 1.57095 1.44248 1.22758 0.97619 0.95196 1.00409 1.22136 0.87372 0.95082 0.96514 1.48660 1.22144 1.10427 1.49472 1.19530 0.82747 0.87622 0.81117 1.90725 1.37675 1.65032 1.47962 1.20441 0.82036 0.89498 0.78930 1.90724 1.37437 1.65594 1.45786 1.45955 1.27500 1.07149 1.55733 1.21331 0.95852 0.81012 1.00414 1.22052 0.98717 0.97685 0.91836 1.22564 0.71778 0.80675 0.90332 1.90716 1.44721 1.69208 1.34822 1.84374 1.84026 1.21509 1.42097 1.23086 0.93693 0.99243 0.99686 1.22950 0.96400 0.97795 1.00934 1.22910 0.96981 0.90604 1.04314 1.23478 1.03195 0.75698 1.00530 0.91919 0.76962 0.90551 0.90376 0.91198 0.91790 0.73848 0.90462 0.89288 0.72202 0.87781 0.90225 0.89697 0.90193 0.89366 0.87977 0.91476 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.34 10.69 55.43 0.59 -22.75 16 2 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.54 -13.75 8.28 -34.44 -0.29 -14.03 16 8 H 0.07 1.69 7.79 -52.49 -0.41 1.28 16 9 C 0.25 5.97 0.88 -89.47 -0.08 5.89 16 10 O -0.58 -14.65 13.16 -35.23 -0.46 -15.11 16 11 C -0.12 -2.47 6.15 -24.74 -0.15 -2.62 16 12 C 0.11 2.15 5.49 -3.06 -0.02 2.13 16 13 N -0.57 -12.13 3.33 -171.03 -0.57 -12.70 16 14 C 0.51 10.18 7.91 -11.58 -0.09 10.08 16 15 O -0.54 -11.61 16.73 5.50 0.09 -11.52 16 16 C 0.51 8.56 7.86 -11.59 -0.09 8.47 16 17 O -0.52 -9.27 14.12 5.50 0.08 -9.19 16 18 N -0.70 -9.19 5.09 -60.73 -0.31 -9.50 16 19 C 0.14 1.36 5.11 -4.04 -0.02 1.34 16 20 C -0.10 -0.83 1.04 -154.85 -0.16 -0.99 16 21 C 0.51 4.94 7.09 36.00 0.26 5.19 16 22 O -0.51 -6.06 16.59 -18.75 -0.31 -6.38 16 23 O -0.51 -4.48 10.46 -39.25 -0.41 -4.89 16 24 C -0.12 -0.81 7.23 -25.83 -0.19 -1.00 16 25 C -0.14 -0.88 7.76 -25.83 -0.20 -1.08 16 26 C -0.11 -0.72 7.02 -25.92 -0.18 -0.90 16 27 C 0.09 2.17 5.38 -2.53 -0.01 2.15 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.38 9.76 7.57 45.56 0.34 10.11 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 32 H 0.07 1.35 7.58 -51.93 -0.39 0.96 16 33 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 34 H 0.42 5.43 5.30 -40.82 -0.22 5.21 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.80 7.98 -51.93 -0.41 0.39 16 37 H 0.42 2.12 9.10 45.56 0.41 2.53 16 38 H 0.10 0.61 7.99 -51.93 -0.41 0.20 16 39 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.66 7.42 -51.93 -0.39 0.28 16 43 H 0.10 0.49 8.10 -51.93 -0.42 0.07 16 44 H 0.07 1.62 8.03 -51.93 -0.42 1.20 16 45 H 0.09 2.37 7.32 -51.93 -0.38 1.99 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -31.29 372.39 -6.78 -38.07 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -4.75 Total: 16.95 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: -1.32 Total: 16.36 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.29 Total: -44.94 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -1.02 Total: -47.09 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.29 -6.78 -38.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606016.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.429 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds