Wall clock time and date at job start Sat Apr 11 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48501 * 109.47007 * 274.86291 * 3 2 1 5 5 H 1.48500 * 109.47039 * 34.86146 * 3 2 1 6 6 H 1.48499 * 109.47381 * 154.86180 * 3 2 1 7 7 C 1.37876 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99789 * 5.10160 * 7 2 1 9 9 C 1.50693 * 120.00473 * 185.10721 * 7 2 1 10 10 H 1.08997 * 109.49941 * 325.21237 * 9 7 2 11 11 C 1.53040 * 109.52657 * 205.13080 * 9 7 2 12 12 C 1.53040 * 109.53768 * 178.66461 * 11 9 7 13 13 C 1.52770 * 109.38308 * 61.24144 * 12 11 9 14 14 N 1.46921 * 109.00634 * 305.58596 * 13 12 11 15 15 C 1.34773 * 120.63166 * 233.58334 * 14 13 12 16 16 O 1.21344 * 120.00274 * 184.75067 * 15 14 13 17 17 C 1.49456 * 119.99748 * 4.75357 * 15 14 13 18 18 O 1.21349 * 120.00147 * 85.32013 * 17 15 14 19 19 N 1.34779 * 119.99725 * 265.31625 * 17 15 14 20 20 C 1.47153 * 120.97746 * 175.00993 * 19 17 15 21 21 C 1.53295 * 108.38406 * 230.55673 * 20 19 17 22 22 O 1.43051 * 109.25072 * 307.69571 * 21 20 19 23 23 C 1.42966 * 114.11150 * 62.54538 * 22 21 20 24 24 H 1.08995 * 109.51217 * 57.39248 * 23 22 21 25 25 C 1.50695 * 109.51312 * 177.49873 * 23 22 21 26 26 O 1.20825 * 120.00476 * 4.89864 * 25 23 22 27 27 O 1.34230 * 119.99761 * 184.89633 * 25 23 22 28 28 C 1.47146 * 120.98373 * 355.03216 * 19 17 15 29 29 C 1.46932 * 118.73996 * 53.31108 * 14 13 12 30 30 H 0.97004 * 119.99805 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46002 * 298.68580 * 11 9 7 32 32 H 1.08996 * 109.45923 * 58.64603 * 11 9 7 33 33 H 1.09005 * 109.49502 * 181.31131 * 12 11 9 34 34 H 1.08999 * 109.49881 * 301.41492 * 12 11 9 35 35 H 1.09003 * 109.50739 * 185.70577 * 13 12 11 36 36 H 1.09001 * 109.43212 * 65.42152 * 13 12 11 37 37 H 1.08999 * 109.68528 * 350.28242 * 20 19 17 38 38 H 1.09003 * 109.67941 * 110.83697 * 20 19 17 39 39 H 1.08995 * 109.51178 * 67.62449 * 21 20 19 40 40 H 1.08999 * 109.51063 * 187.72636 * 21 20 19 41 41 H 0.96708 * 116.99571 * 180.02562 * 27 25 23 42 42 H 1.09003 * 109.68432 * 9.71957 * 28 19 17 43 43 H 1.09006 * 109.68102 * 249.16524 * 28 19 17 44 44 H 1.08997 * 109.58331 * 66.42721 * 29 14 13 45 45 H 1.08995 * 109.58623 * 186.71164 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3939 2.1057 -1.3951 5 1 1.5018 2.6208 0.8003 6 1 3.5943 1.4127 0.5947 7 6 2.0046 -1.1940 -0.0005 8 1 1.4678 -2.1274 -0.0841 9 6 3.5070 -1.1967 0.1156 10 1 3.9135 -0.3281 -0.4022 11 6 4.0664 -2.4746 -0.5138 12 6 5.5942 -2.4622 -0.4257 13 6 6.0172 -2.4203 1.0417 14 7 5.3654 -1.2771 1.6951 15 6 6.0932 -0.3652 2.3698 16 8 5.5371 0.5260 2.9772 17 6 7.5852 -0.4517 2.3698 18 8 8.2219 0.0478 1.4655 19 7 8.2235 -1.0844 3.3742 20 6 9.6820 -1.2775 3.3420 21 6 9.9801 -2.7555 3.6187 22 8 9.3132 -3.1544 4.8197 23 6 7.8879 -3.0649 4.7536 24 1 7.5231 -3.6716 3.9248 25 6 7.2917 -3.5650 6.0441 26 8 8.0129 -3.8746 6.9628 27 8 5.9595 -3.6663 6.1731 28 6 7.4826 -1.6027 4.5350 29 6 3.9056 -1.1435 1.5939 30 1 -0.4850 0.8401 0.0004 31 1 3.6789 -3.3422 0.0204 32 1 3.7634 -2.5271 -1.5594 33 1 5.9930 -3.3616 -0.8949 34 1 5.9810 -1.5815 -0.9385 35 1 7.0996 -2.3092 1.1055 36 1 5.7129 -3.3443 1.5333 37 1 10.0671 -1.0029 2.3600 38 1 10.1512 -0.6589 4.1070 39 1 9.6229 -3.3611 2.7858 40 1 11.0549 -2.8945 3.7352 41 1 5.6239 -3.9917 7.0197 42 1 6.4112 -1.5435 4.3430 43 1 7.7304 -1.0168 5.4202 44 1 3.4258 -1.9613 2.1314 45 1 3.5952 -0.1914 2.0242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:11 Heat of formation + Delta-G solvation = -186.114462 kcal Electronic energy + Delta-G solvation = -31673.624648 eV Core-core repulsion = 27270.925671 eV Total energy + Delta-G solvation = -4402.698976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42732 -40.59040 -39.40057 -38.35376 -37.13372 -36.51706 -35.28496 -33.52649 -32.48844 -32.05853 -30.70615 -29.11776 -26.25748 -25.72105 -25.34669 -23.97607 -22.23442 -22.07172 -21.36757 -19.71187 -18.86945 -18.61381 -18.06152 -17.44842 -17.13113 -16.84394 -16.76799 -16.44172 -16.19175 -15.48809 -15.22942 -15.00232 -14.67215 -14.49964 -14.21478 -14.04663 -13.86533 -13.53611 -13.32670 -13.15975 -12.80150 -12.70952 -12.57665 -12.38739 -12.22518 -11.92846 -11.54089 -11.47690 -11.41265 -11.15176 -10.88534 -10.79047 -10.70870 -10.64729 -10.24965 -9.75074 -9.67201 -9.40255 -9.20221 -9.18103 -8.65563 -8.34551 -6.17989 -4.19739 1.62575 1.96326 2.03143 2.04466 2.54037 3.18586 3.28790 3.39299 3.47927 3.51403 3.92334 4.02793 4.29489 4.37720 4.40370 4.59377 4.64751 4.74550 4.90507 4.93891 5.09775 5.12857 5.14497 5.18846 5.34122 5.37859 5.64803 5.76696 5.87908 6.02172 6.03818 6.10887 6.31038 6.32655 6.41725 6.51869 6.63078 6.63632 6.67159 7.13186 7.27316 7.44693 7.45680 7.52095 7.62737 8.01920 8.40673 8.86967 9.45038 10.93928 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.003712 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.432206 B = 7540.962615 C = 8053.290758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.866 3.134 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.516 4.516 8 H 0.077 0.923 9 C 0.005 3.995 10 H 0.035 0.965 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.107 3.893 14 N -0.585 5.585 15 C 0.504 3.496 16 O -0.515 6.515 17 C 0.525 3.475 18 O -0.504 6.504 19 N -0.607 5.607 20 C 0.072 3.928 21 C 0.051 3.949 22 O -0.353 6.353 23 C 0.089 3.911 24 H 0.108 0.892 25 C 0.490 3.510 26 O -0.489 6.489 27 O -0.505 6.505 28 C 0.087 3.913 29 C 0.109 3.891 30 H 0.266 0.734 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.121 0.879 41 H 0.420 0.580 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.516 -9.461 8.564 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.554 4.554 8 H 0.095 0.905 9 C -0.015 4.015 10 H 0.053 0.947 11 C -0.141 4.141 12 C -0.176 4.176 13 C -0.015 4.015 14 N -0.319 5.319 15 C 0.285 3.715 16 O -0.391 6.391 17 C 0.308 3.692 18 O -0.376 6.376 19 N -0.344 5.344 20 C -0.050 4.050 21 C -0.026 4.026 22 O -0.271 6.271 23 C 0.029 3.971 24 H 0.125 0.875 25 C 0.330 3.670 26 O -0.374 6.374 27 O -0.318 6.318 28 C -0.036 4.036 29 C -0.010 4.010 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.139 0.861 41 H 0.281 0.719 42 H 0.129 0.871 43 H 0.111 0.889 44 H 0.090 0.910 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.815 -8.578 8.424 22.328 hybrid contribution 0.079 0.874 0.338 0.940 sum 18.894 -7.704 8.762 22.206 Atomic orbital electron populations 1.69900 1.06358 1.27245 1.49360 1.25043 0.94657 0.99044 0.93781 0.87020 0.81317 0.83894 0.78536 1.20351 1.21165 1.17915 1.20866 0.88444 0.94732 1.51366 0.90488 1.19498 0.97178 0.94556 0.90284 0.94654 1.21533 0.91488 0.99522 1.01511 1.21930 0.99196 1.02009 0.94456 1.21695 0.96176 0.88810 0.94868 1.48641 1.09794 1.23395 1.50081 1.20005 0.86813 0.83560 0.81079 1.90821 1.70717 1.34131 1.43414 1.20717 0.89286 0.77733 0.81443 1.90795 1.66842 1.44394 1.35616 1.48142 1.08120 1.57386 1.20797 1.22474 0.79836 0.97347 1.05329 1.23185 0.98792 0.93580 0.87048 1.88075 1.15024 1.87176 1.36846 1.21657 0.84131 0.97071 0.94267 0.87462 1.22423 0.80735 0.75118 0.88750 1.90767 1.61612 1.44429 1.40625 1.84502 1.23088 1.79410 1.44781 1.22306 0.98811 0.92448 0.90077 1.22784 0.73760 1.02997 1.01501 0.92441 0.92477 0.91848 0.91314 0.91709 0.91525 0.90675 0.87181 0.89706 0.91609 0.86148 0.71938 0.87056 0.88922 0.90979 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 21.67 26.44 -169.99 -4.49 17.18 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.26 -6.42 5.80 56.52 0.33 -6.09 16 7 C -0.52 -13.51 8.87 -34.44 -0.31 -13.82 16 8 H 0.08 2.16 8.05 -52.49 -0.42 1.74 16 9 C 0.00 0.10 1.77 -91.65 -0.16 -0.06 16 10 H 0.04 0.83 5.71 -51.93 -0.30 0.53 16 11 C -0.10 -1.80 5.15 -26.69 -0.14 -1.93 16 12 C -0.14 -1.94 6.06 -26.83 -0.16 -2.10 16 13 C 0.11 1.40 6.33 -3.93 -0.02 1.38 16 14 N -0.59 -9.97 2.98 -173.53 -0.52 -10.49 16 15 C 0.50 9.05 5.52 -11.58 -0.06 8.99 16 16 O -0.52 -11.01 16.53 5.50 0.09 -10.92 16 17 C 0.52 8.00 5.48 -11.58 -0.06 7.94 16 18 O -0.50 -8.83 16.59 5.50 0.09 -8.74 16 19 N -0.61 -6.80 3.02 -172.78 -0.52 -7.32 16 20 C 0.07 0.59 6.62 -3.53 -0.02 0.57 16 21 C 0.05 0.33 6.98 37.31 0.26 0.59 16 22 O -0.35 -3.27 9.93 -55.11 -0.55 -3.82 16 23 C 0.09 0.78 3.30 -27.73 -0.09 0.69 16 24 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 25 C 0.49 4.65 7.66 36.00 0.28 4.93 16 26 O -0.49 -6.16 17.27 -25.45 -0.44 -6.60 16 27 O -0.50 -3.66 13.42 -39.26 -0.53 -4.19 16 28 C 0.09 0.87 5.83 -3.54 -0.02 0.85 16 29 C 0.11 2.21 5.40 -3.70 -0.02 2.19 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.77 6.31 -51.93 -0.33 0.45 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.11 0.92 7.12 -51.93 -0.37 0.55 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.42 1.27 9.10 45.56 0.41 1.68 16 42 H 0.11 1.23 6.40 -51.93 -0.33 0.90 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.08 1.96 5.58 -51.93 -0.29 1.67 16 LS Contribution 366.74 15.07 5.53 5.53 Total: -1.00 -36.24 366.74 -6.68 -42.92 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.48 Total: -0.26 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: -0.64 Total: 12.28 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.26 Total: -43.38 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -1.33 Total: -34.27 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.49 Total: 17.18 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.24 -6.68 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.190 kcal (2) G-P(sol) polarization free energy of solvation -36.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds