Wall clock time and date at job start Sat Apr 11 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48501 * 109.47007 * 274.86291 * 3 2 1 5 5 H 1.48500 * 109.47039 * 34.86146 * 3 2 1 6 6 H 1.48499 * 109.47381 * 154.86180 * 3 2 1 7 7 C 1.37876 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99789 * 5.10160 * 7 2 1 9 9 C 1.50693 * 120.00473 * 185.10721 * 7 2 1 10 10 H 1.08997 * 109.49941 * 325.21237 * 9 7 2 11 11 C 1.53040 * 109.52657 * 205.13080 * 9 7 2 12 12 C 1.53040 * 109.53768 * 178.66461 * 11 9 7 13 13 C 1.52770 * 109.38308 * 61.24144 * 12 11 9 14 14 N 1.46921 * 109.00634 * 305.58596 * 13 12 11 15 15 C 1.34773 * 120.63166 * 233.58334 * 14 13 12 16 16 O 1.21344 * 120.00274 * 184.75067 * 15 14 13 17 17 C 1.49456 * 119.99748 * 4.75357 * 15 14 13 18 18 O 1.21349 * 120.00147 * 85.32013 * 17 15 14 19 19 N 1.34779 * 119.99725 * 265.31625 * 17 15 14 20 20 C 1.47153 * 120.97746 * 175.00993 * 19 17 15 21 21 C 1.53295 * 108.38406 * 230.55673 * 20 19 17 22 22 O 1.43051 * 109.25072 * 307.69571 * 21 20 19 23 23 C 1.42966 * 114.11150 * 62.54538 * 22 21 20 24 24 H 1.08995 * 109.51217 * 57.39248 * 23 22 21 25 25 C 1.50695 * 109.51312 * 177.49873 * 23 22 21 26 26 O 1.20825 * 120.00476 * 4.89864 * 25 23 22 27 27 O 1.34230 * 119.99761 * 184.89633 * 25 23 22 28 28 C 1.47146 * 120.98373 * 355.03216 * 19 17 15 29 29 C 1.46932 * 118.73996 * 53.31108 * 14 13 12 30 30 H 0.97004 * 119.99805 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46002 * 298.68580 * 11 9 7 32 32 H 1.08996 * 109.45923 * 58.64603 * 11 9 7 33 33 H 1.09005 * 109.49502 * 181.31131 * 12 11 9 34 34 H 1.08999 * 109.49881 * 301.41492 * 12 11 9 35 35 H 1.09003 * 109.50739 * 185.70577 * 13 12 11 36 36 H 1.09001 * 109.43212 * 65.42152 * 13 12 11 37 37 H 1.08999 * 109.68528 * 350.28242 * 20 19 17 38 38 H 1.09003 * 109.67941 * 110.83697 * 20 19 17 39 39 H 1.08995 * 109.51178 * 67.62449 * 21 20 19 40 40 H 1.08999 * 109.51063 * 187.72636 * 21 20 19 41 41 H 0.96708 * 116.99571 * 180.02562 * 27 25 23 42 42 H 1.09003 * 109.68432 * 9.71957 * 28 19 17 43 43 H 1.09006 * 109.68102 * 249.16524 * 28 19 17 44 44 H 1.08997 * 109.58331 * 66.42721 * 29 14 13 45 45 H 1.08995 * 109.58623 * 186.71164 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3939 2.1057 -1.3951 5 1 1.5018 2.6208 0.8003 6 1 3.5943 1.4127 0.5947 7 6 2.0046 -1.1940 -0.0005 8 1 1.4678 -2.1274 -0.0841 9 6 3.5070 -1.1967 0.1156 10 1 3.9135 -0.3281 -0.4022 11 6 4.0664 -2.4746 -0.5138 12 6 5.5942 -2.4622 -0.4257 13 6 6.0172 -2.4203 1.0417 14 7 5.3654 -1.2771 1.6951 15 6 6.0932 -0.3652 2.3698 16 8 5.5371 0.5260 2.9772 17 6 7.5852 -0.4517 2.3698 18 8 8.2219 0.0478 1.4655 19 7 8.2235 -1.0844 3.3742 20 6 9.6820 -1.2775 3.3420 21 6 9.9801 -2.7555 3.6187 22 8 9.3132 -3.1544 4.8197 23 6 7.8879 -3.0649 4.7536 24 1 7.5231 -3.6716 3.9248 25 6 7.2917 -3.5650 6.0441 26 8 8.0129 -3.8746 6.9628 27 8 5.9595 -3.6663 6.1731 28 6 7.4826 -1.6027 4.5350 29 6 3.9056 -1.1435 1.5939 30 1 -0.4850 0.8401 0.0004 31 1 3.6789 -3.3422 0.0204 32 1 3.7634 -2.5271 -1.5594 33 1 5.9930 -3.3616 -0.8949 34 1 5.9810 -1.5815 -0.9385 35 1 7.0996 -2.3092 1.1055 36 1 5.7129 -3.3443 1.5333 37 1 10.0671 -1.0029 2.3600 38 1 10.1512 -0.6589 4.1070 39 1 9.6229 -3.3611 2.7858 40 1 11.0549 -2.8945 3.7352 41 1 5.6239 -3.9917 7.0197 42 1 6.4112 -1.5435 4.3430 43 1 7.7304 -1.0168 5.4202 44 1 3.4258 -1.9613 2.1314 45 1 3.5952 -0.1914 2.0242 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:11 Heat of formation + Delta-G solvation = -214.390886 kcal Electronic energy + Delta-G solvation = -31674.850806 eV Core-core repulsion = 27270.925671 eV Total energy + Delta-G solvation = -4403.925134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43721 -41.50406 -40.42063 -39.37838 -38.58460 -37.22579 -36.17266 -35.33045 -33.71226 -33.12914 -32.28454 -29.97682 -27.65156 -26.93472 -26.47728 -25.05888 -23.50860 -23.16267 -22.17327 -21.06431 -20.07575 -19.35950 -19.31678 -18.78333 -18.42107 -17.94614 -17.70757 -17.36837 -17.06718 -16.56123 -16.26710 -16.08884 -15.94315 -15.71460 -15.39288 -15.25390 -15.13305 -14.87985 -14.55486 -14.41917 -14.14687 -13.87756 -13.85633 -13.41784 -13.08469 -12.96897 -12.90610 -12.73547 -12.62994 -12.59753 -12.11503 -12.06241 -11.80060 -11.67408 -11.62625 -11.46562 -11.28457 -11.09936 -10.74882 -10.72142 -10.04720 -9.80242 -8.35478 -6.36851 0.74133 0.83086 1.02070 1.21536 1.26121 1.32627 1.42732 1.45487 2.05813 2.27536 2.82087 2.95263 3.03397 3.21420 3.62205 3.80849 3.84443 3.90715 4.06328 4.08127 4.12086 4.14196 4.32743 4.39133 4.43345 4.51269 4.60748 4.62606 4.67970 4.79753 4.88692 4.95701 5.00223 5.03342 5.21676 5.27989 5.47021 5.58286 5.61249 5.63355 5.68008 5.78315 6.09920 6.28861 6.40134 6.63757 6.74644 6.87247 7.30152 8.80430 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014630 B = 0.003712 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.432206 B = 7540.962615 C = 8053.290758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.031 3.969 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.505 4.505 8 H 0.052 0.948 9 C 0.001 3.999 10 H 0.016 0.984 11 C -0.099 4.099 12 C -0.130 4.130 13 C 0.101 3.899 14 N -0.583 5.583 15 C 0.498 3.502 16 O -0.560 6.560 17 C 0.534 3.466 18 O -0.531 6.531 19 N -0.592 5.592 20 C 0.068 3.932 21 C 0.054 3.946 22 O -0.368 6.368 23 C 0.094 3.906 24 H 0.131 0.869 25 C 0.497 3.503 26 O -0.525 6.525 27 O -0.502 6.502 28 C 0.086 3.914 29 C 0.120 3.880 30 H 0.266 0.734 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.112 0.888 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.148 0.852 41 H 0.437 0.563 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.414 -11.478 8.678 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.168 4.168 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.185 1.185 7 C -0.544 4.544 8 H 0.070 0.930 9 C -0.019 4.019 10 H 0.034 0.966 11 C -0.137 4.137 12 C -0.168 4.168 13 C -0.020 4.020 14 N -0.315 5.315 15 C 0.281 3.719 16 O -0.439 6.439 17 C 0.317 3.683 18 O -0.407 6.407 19 N -0.328 5.328 20 C -0.053 4.053 21 C -0.022 4.022 22 O -0.287 6.287 23 C 0.034 3.966 24 H 0.149 0.851 25 C 0.338 3.662 26 O -0.413 6.413 27 O -0.317 6.317 28 C -0.037 4.037 29 C -0.001 4.001 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.166 0.834 41 H 0.301 0.699 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 21.746 -10.648 8.548 25.677 hybrid contribution -0.823 1.417 0.345 1.675 sum 20.923 -9.231 8.893 24.537 Atomic orbital electron populations 1.70001 1.07662 1.27821 1.52184 1.25633 0.95073 1.01703 0.94395 0.86196 0.79789 0.81103 0.78476 1.19680 1.21556 1.18543 1.21184 0.90911 0.93303 1.48998 0.92951 1.19480 0.94334 0.96374 0.91703 0.96575 1.21438 0.94266 0.97243 1.00720 1.21884 0.96106 1.03425 0.95373 1.22078 0.97247 0.88491 0.94149 1.48597 1.08529 1.24426 1.49995 1.20574 0.88283 0.82737 0.80331 1.90792 1.71976 1.35853 1.45296 1.20066 0.87656 0.78366 0.82255 1.90792 1.66693 1.46083 1.37086 1.48134 1.09500 1.55500 1.19622 1.22782 0.77409 0.99230 1.05860 1.23399 1.00184 0.91954 0.86704 1.88086 1.15068 1.87159 1.38398 1.21667 0.84295 0.96024 0.94612 0.85131 1.22570 0.80984 0.74170 0.88474 1.90759 1.62489 1.46274 1.41803 1.84478 1.22024 1.78995 1.46186 1.22362 0.98132 0.93735 0.89514 1.22240 0.76303 1.01740 0.99856 0.92477 0.91215 0.92536 0.87015 0.93305 0.89321 0.87118 0.86955 0.88884 0.89944 0.83439 0.69902 0.88148 0.88652 0.89740 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.01 13.96 21.45 0.30 -56.71 16 2 C 0.03 1.75 5.47 84.65 0.46 2.22 16 3 Si 0.92 46.27 26.44 68.60 1.81 48.09 16 4 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.26 -13.30 5.80 99.48 0.58 -12.73 16 7 C -0.51 -26.93 8.87 25.60 0.23 -26.70 16 8 H 0.05 3.00 8.05 -2.91 -0.02 2.98 16 9 C 0.00 0.03 1.77 -11.46 -0.02 0.01 16 10 H 0.02 0.76 5.71 -2.39 -0.01 0.74 16 11 C -0.10 -3.25 5.15 30.62 0.16 -3.09 16 12 C -0.13 -3.17 6.06 30.53 0.19 -2.98 16 13 C 0.10 2.24 6.33 86.22 0.55 2.79 16 14 N -0.58 -18.87 2.98 -821.29 -2.45 -21.32 16 15 C 0.50 17.47 5.52 87.27 0.48 17.95 16 16 O -0.56 -24.30 16.53 -3.23 -0.05 -24.35 16 17 C 0.53 15.31 5.48 87.27 0.48 15.79 16 18 O -0.53 -17.73 16.59 -3.24 -0.05 -17.78 16 19 N -0.59 -11.75 3.02 -818.91 -2.47 -14.22 16 20 C 0.07 0.89 6.62 86.35 0.57 1.46 16 21 C 0.05 0.46 6.98 72.08 0.50 0.97 16 22 O -0.37 -5.57 9.93 -129.98 -1.29 -6.86 16 23 C 0.09 1.35 3.30 29.95 0.10 1.45 16 24 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 25 C 0.50 8.34 7.66 71.23 0.55 8.89 16 26 O -0.52 -12.42 17.27 28.38 0.49 -11.93 16 27 O -0.50 -6.17 13.42 -51.42 -0.69 -6.86 16 28 C 0.09 1.53 5.83 86.36 0.50 2.03 16 29 C 0.12 4.80 5.40 86.36 0.47 5.27 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.65 6.31 -2.39 -0.02 1.63 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.11 1.51 7.12 -2.39 -0.02 1.49 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.44 1.79 9.10 -74.05 -0.67 1.11 16 42 H 0.10 2.06 6.40 -2.39 -0.02 2.05 16 43 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 45 H 0.05 2.38 5.58 -2.39 -0.01 2.37 16 Total: -1.00 -82.16 366.74 1.04 -81.12 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 0.23 Total: 4.78 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 5.21 Total: 26.04 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -4.62 Total: -92.25 kcal Atomic # 8 Polarization: -66.18 SS G_CDS: -1.60 Total: -67.78 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.81 Total: 48.09 kcal Total: -82.16 1.04 -81.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.269 kcal (2) G-P(sol) polarization free energy of solvation -82.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds