Wall clock time and date at job start Sat Apr 11 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47296 * 90.57777 * 3 2 1 5 5 N 1.46494 * 109.47208 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99971 * 269.99762 * 5 4 3 7 7 C 1.50703 * 109.47423 * 270.00130 * 6 5 4 8 8 H 1.08001 * 119.99825 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99902 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99739 * 180.02562 * 9 7 6 11 11 Si 1.86791 * 120.00149 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.47234 * 90.00591 * 11 9 7 13 13 H 1.48506 * 109.47151 * 210.00104 * 11 9 7 14 14 H 1.48500 * 109.47651 * 330.00467 * 11 9 7 15 15 C 1.34780 * 119.99912 * 90.00290 * 5 4 3 16 16 O 1.21286 * 119.99926 * 179.97438 * 15 5 4 17 17 C 1.50694 * 119.99968 * 359.97438 * 15 5 4 18 18 C 1.50706 * 109.47186 * 180.02562 * 17 15 5 19 19 C 1.38315 * 119.88320 * 90.00029 * 18 17 15 20 20 C 1.38022 * 120.11653 * 180.02562 * 19 18 17 21 21 C 1.39301 * 119.88394 * 359.97438 * 20 19 18 22 22 C 1.48467 * 120.11880 * 179.97438 * 21 20 19 23 23 N 1.34049 * 126.67276 * 0.02562 * 22 21 20 24 24 N 1.28984 * 107.26777 * 179.97438 * 23 22 21 25 25 N 1.28733 * 108.94425 * 0.02562 * 24 23 22 26 26 H 0.96998 * 125.34102 * 179.97438 * 25 24 23 27 27 N 1.28876 * 109.31590 * 359.97438 * 25 24 23 28 28 C 1.39294 * 119.76355 * 0.25124 * 21 20 19 29 29 C 1.38030 * 119.88321 * 359.49518 * 28 21 20 30 30 H 1.09005 * 109.47590 * 330.57779 * 3 2 1 31 31 H 1.09001 * 109.47262 * 210.57466 * 3 2 1 32 32 H 1.08999 * 109.47202 * 59.99548 * 4 3 2 33 33 H 1.09001 * 109.46711 * 300.00026 * 4 3 2 34 34 H 1.08997 * 109.47275 * 30.00558 * 6 5 4 35 35 H 1.09002 * 109.47092 * 150.00320 * 6 5 4 36 36 H 0.96993 * 120.00041 * 179.97438 * 10 9 7 37 37 H 1.09001 * 109.47585 * 60.00571 * 17 15 5 38 38 H 1.08996 * 109.47384 * 300.00105 * 17 15 5 39 39 H 1.08007 * 119.93892 * 0.02562 * 19 18 17 40 40 H 1.08011 * 120.06010 * 179.97438 * 20 19 18 41 41 H 1.08004 * 120.05620 * 179.75113 * 28 21 20 42 42 H 1.08002 * 119.94485 * 180.23225 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 0.0154 -1.4424 5 7 4.5830 0.0167 -1.4424 6 6 5.3144 1.2860 -1.4299 7 6 5.5652 1.7354 -2.8463 8 1 5.2145 1.1357 -3.6732 9 6 6.2424 2.9121 -3.0865 10 7 6.4608 3.3045 -4.3226 11 14 6.8484 3.9496 -1.6563 12 1 8.2219 3.5254 -1.2839 13 1 6.8631 5.3804 -2.0540 14 1 5.9421 3.7682 -0.4940 15 6 5.2579 -1.1499 -1.4541 16 8 6.4708 -1.1488 -1.4545 17 6 4.5055 -2.4555 -1.4665 18 6 5.4858 -3.6001 -1.4774 19 6 5.9341 -4.1350 -0.2832 20 6 6.8323 -5.1829 -0.2876 21 6 7.2869 -5.7023 -1.4975 22 6 8.2535 -6.8292 -1.5083 23 7 8.7748 -7.4471 -0.4390 24 7 9.5664 -8.3667 -0.8764 25 7 9.5598 -8.3465 -2.1635 26 1 10.0720 -8.9381 -2.7366 27 7 8.7659 -7.4167 -2.5712 28 6 6.8359 -5.1569 -2.6973 29 6 5.9336 -4.1124 -2.6817 30 1 2.9719 -0.8943 0.5048 31 1 2.9710 0.8856 0.5227 32 1 2.7543 0.9103 -1.9473 33 1 2.7551 -0.8695 -1.9652 34 1 4.7247 2.0400 -0.9085 35 1 6.2670 1.1514 -0.9174 36 1 6.9369 4.1324 -4.4917 37 1 3.8786 -2.5052 -2.3568 38 1 3.8793 -2.5225 -0.5770 39 1 5.5806 -3.7318 0.6544 40 1 7.1820 -5.5996 0.6455 41 1 7.1884 -5.5532 -3.6381 42 1 5.5804 -3.6912 -3.6113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606347976.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:16 Heat of formation + Delta-G solvation = 118.470055 kcal Electronic energy + Delta-G solvation = -27603.703073 eV Core-core repulsion = 23586.106295 eV Total energy + Delta-G solvation = -4017.596779 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.45533 -41.05293 -39.81573 -37.90717 -36.64037 -35.54510 -34.94916 -34.69538 -33.00319 -32.20135 -31.88522 -30.18332 -28.44518 -25.74881 -25.18391 -25.10420 -23.84047 -23.35184 -22.03850 -20.18479 -19.82879 -19.11234 -18.39537 -18.13894 -17.89063 -17.75846 -17.06783 -16.50286 -16.19952 -15.86538 -15.63715 -15.45903 -15.03450 -14.80855 -14.58485 -14.35430 -14.33453 -14.21387 -13.79810 -13.64792 -13.49610 -13.42666 -13.25887 -13.05951 -12.73725 -12.62034 -12.43349 -12.39160 -12.27560 -12.21246 -11.92698 -11.85622 -11.85017 -11.70446 -11.64685 -10.74066 -10.58486 -9.82608 -9.44078 -9.36708 -8.24837 -6.28509 -0.26837 0.18292 0.53718 1.31666 1.40637 1.43127 1.44749 1.51611 1.77231 1.93335 1.96743 2.37195 2.39276 2.69623 2.89577 3.11435 3.17949 3.28221 3.76831 3.97901 3.99080 4.10808 4.20104 4.20851 4.23994 4.40940 4.47979 4.53414 4.66227 4.73494 4.81812 4.90286 4.94417 4.98106 5.11632 5.17686 5.20393 5.43488 5.50263 5.57595 5.61664 5.68400 5.71435 6.01099 6.33514 6.69697 6.75121 6.79488 7.11599 7.32587 7.55679 8.92095 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010498 B = 0.002702 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2666.446334 B =10360.507425 C =12227.734164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.246 3.754 3 C -0.039 4.039 4 C 0.110 3.890 5 N -0.595 5.595 6 C 0.222 3.778 7 C -0.528 4.528 8 H 0.031 0.969 9 C 0.007 3.993 10 N -0.951 5.951 11 Si 0.942 3.058 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.225 1.225 15 C 0.507 3.493 16 O -0.581 6.581 17 C -0.100 4.100 18 C -0.047 4.047 19 C -0.108 4.108 20 C -0.081 4.081 21 C -0.042 4.042 22 C 0.214 3.786 23 N -0.293 5.293 24 N -0.057 5.057 25 N -0.202 5.202 26 H 0.494 0.506 27 N -0.301 5.301 28 C -0.084 4.084 29 C -0.120 4.120 30 H 0.145 0.855 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.024 0.976 36 H 0.264 0.736 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.142 0.858 41 H 0.136 0.864 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -20.801 8.923 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.071 4.071 3 C -0.079 4.079 4 C -0.014 4.014 5 N -0.326 5.326 6 C 0.099 3.901 7 C -0.567 4.567 8 H 0.049 0.951 9 C -0.190 4.190 10 N -0.592 5.592 11 Si 0.765 3.235 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.148 1.148 15 C 0.296 3.704 16 O -0.460 6.460 17 C -0.139 4.139 18 C -0.049 4.049 19 C -0.126 4.126 20 C -0.101 4.101 21 C -0.046 4.046 22 C -0.065 4.065 23 N -0.166 5.166 24 N -0.052 5.052 25 N -0.052 5.052 26 H 0.353 0.647 27 N -0.153 5.153 28 C -0.104 4.104 29 C -0.138 4.138 30 H 0.163 0.837 31 H 0.144 0.856 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.165 0.835 39 H 0.173 0.827 40 H 0.160 0.840 41 H 0.154 0.846 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.474 -21.140 9.109 23.152 hybrid contribution 1.294 0.842 -0.970 1.824 sum -1.180 -20.298 8.138 21.901 Atomic orbital electron populations 1.81279 1.14750 1.11207 1.10127 1.29244 0.95061 0.91201 0.91616 1.19901 0.79743 1.08722 0.99576 1.21563 0.78744 1.05625 0.95502 1.47839 1.06764 1.05908 1.72073 1.19382 0.93170 0.82623 0.94900 1.21653 1.35890 1.06155 0.93024 0.95073 1.25846 0.95697 0.99175 0.98321 1.70064 1.43257 1.24097 1.21791 0.85807 0.79723 0.77414 0.80566 1.20661 1.21194 1.14754 1.21120 0.87714 0.86012 0.75534 1.90712 1.16487 1.87845 1.50952 1.20937 0.97313 0.87390 1.08308 1.19757 0.96719 0.94836 0.93555 1.21217 0.97089 0.95644 0.98673 1.21261 0.95935 0.95799 0.97070 1.17378 0.97568 0.94190 0.95427 1.23860 0.99507 0.98770 0.84375 1.76052 1.08944 1.05211 1.26356 1.78820 1.15627 1.16075 0.94635 1.47770 1.28754 1.23100 1.05617 0.64713 1.74915 1.09215 1.04486 1.26692 1.21173 0.96152 0.95818 0.97297 1.21159 0.97728 0.96306 0.98657 0.83747 0.85598 0.90127 0.87367 0.92322 0.95811 0.92668 0.85752 0.83524 0.82701 0.83987 0.84603 0.84887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.40 18.54 20.01 0.37 -12.03 16 2 C 0.25 4.40 15.43 89.44 1.38 5.78 16 3 C -0.04 -0.48 6.03 28.79 0.17 -0.31 16 4 C 0.11 2.19 5.17 86.38 0.45 2.64 16 5 N -0.60 -18.29 2.46 -826.16 -2.03 -20.32 16 6 C 0.22 9.10 4.23 85.63 0.36 9.46 16 7 C -0.53 -28.41 9.94 25.60 0.25 -28.15 16 8 H 0.03 1.89 8.06 -2.91 -0.02 1.86 16 9 C 0.01 0.38 5.47 84.65 0.46 0.85 16 10 N -0.95 -58.47 13.96 21.45 0.30 -58.17 16 11 Si 0.94 41.78 27.47 68.60 1.88 43.67 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.23 -8.46 6.54 99.48 0.65 -7.81 16 15 C 0.51 15.79 7.67 87.65 0.67 16.47 16 16 O -0.58 -24.92 15.61 -3.05 -0.05 -24.96 16 17 C -0.10 -1.87 4.38 29.10 0.13 -1.74 16 18 C -0.05 -1.05 4.38 -19.83 -0.09 -1.14 16 19 C -0.11 -2.20 9.68 22.24 0.22 -1.99 16 20 C -0.08 -1.78 9.70 22.47 0.22 -1.56 16 21 C -0.04 -1.03 5.88 -20.04 -0.12 -1.15 16 22 C 0.21 5.18 7.94 137.38 1.09 6.27 16 23 N -0.29 -7.18 12.23 -52.18 -0.64 -7.82 16 24 N -0.06 -1.13 13.47 37.02 0.50 -0.63 16 25 N -0.20 -2.92 7.90 37.02 0.29 -2.62 16 26 H 0.49 1.97 8.96 -347.54 -3.12 -1.14 16 27 N -0.30 -6.18 12.08 -52.13 -0.63 -6.81 16 28 C -0.08 -2.01 9.70 22.47 0.22 -1.79 16 29 C -0.12 -2.89 9.68 22.24 0.22 -2.67 16 30 H 0.14 0.86 7.22 -2.38 -0.02 0.85 16 31 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.91 8.07 -2.39 -0.02 1.89 16 33 H 0.11 1.57 6.44 -2.39 -0.02 1.55 16 34 H 0.06 2.11 7.13 -2.39 -0.02 2.10 16 35 H 0.02 1.07 6.85 -2.39 -0.02 1.05 16 36 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.12 1.85 7.34 -2.39 -0.02 1.83 16 38 H 0.15 1.36 7.12 -2.39 -0.02 1.34 16 39 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 40 H 0.14 2.79 7.89 -2.91 -0.02 2.77 16 41 H 0.14 2.94 7.88 -2.91 -0.02 2.91 16 42 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -85.88 375.28 3.56 -82.33 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -2.08 Total: 6.40 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 5.63 Total: 0.96 kcal Atomic # 7 Polarization: -106.56 SS G_CDS: -1.84 Total: -108.39 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.96 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.88 Total: 43.67 kcal Total: -85.88 3.56 -82.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606347976.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.797 kcal (2) G-P(sol) polarization free energy of solvation -85.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds