Wall clock time and date at job start Sat Apr 11 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99825 * 2 1 4 4 H 1.48501 * 109.46869 * 240.00493 * 3 2 1 5 5 H 1.48499 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46740 * 120.00859 * 3 2 1 7 7 C 1.37871 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99830 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00285 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47081 * 185.06205 * 9 7 2 11 11 C 1.46905 * 110.99913 * 199.68096 * 10 9 7 12 12 C 1.50702 * 109.46889 * 71.88157 * 11 10 9 13 13 C 1.34514 * 125.78809 * 90.00298 * 12 11 10 14 14 C 1.41380 * 106.83541 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84714 * 0.02562 * 14 13 12 16 16 O 1.34302 * 125.78832 * 269.68991 * 12 11 10 17 17 C 1.46904 * 111.00154 * 75.73048 * 10 9 7 18 18 C 1.50700 * 109.47075 * 189.99956 * 17 10 9 19 19 C 1.38297 * 119.55458 * 95.01741 * 18 17 10 20 20 C 1.38730 * 119.35233 * 179.76627 * 19 18 17 21 21 C 1.38462 * 118.51253 * 0.45902 * 20 19 18 22 22 C 1.39257 * 119.06707 * 359.52205 * 21 20 19 23 23 C 1.48427 * 119.71859 * 180.23379 * 22 21 20 24 24 N 1.34053 * 126.67968 * 0.02562 * 23 22 21 25 25 N 1.28983 * 107.26897 * 179.97438 * 24 23 22 26 26 N 1.28737 * 108.94896 * 0.02562 * 25 24 23 27 27 H 0.97000 * 125.34092 * 179.97438 * 26 25 24 28 28 N 1.28876 * 109.31480 * 359.72230 * 26 25 24 29 29 N 1.31735 * 119.55474 * 274.99875 * 18 17 10 30 30 H 0.96996 * 119.99622 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47089 * 65.05666 * 9 7 2 32 32 H 1.09004 * 109.46499 * 305.05909 * 9 7 2 33 33 H 1.08993 * 109.47391 * 191.88270 * 11 10 9 34 34 H 1.09005 * 109.46980 * 311.88439 * 11 10 9 35 35 H 1.07996 * 126.57673 * 0.03560 * 13 12 11 36 36 H 1.08004 * 126.57017 * 179.97438 * 14 13 12 37 37 H 1.07998 * 125.78914 * 180.02562 * 15 14 13 38 38 H 1.09000 * 109.47122 * 69.99634 * 17 10 9 39 39 H 1.09006 * 109.46614 * 309.99527 * 17 10 9 40 40 H 1.07996 * 120.32544 * 0.02562 * 19 18 17 41 41 H 1.08000 * 120.74506 * 180.25893 * 20 19 18 42 42 H 1.07991 * 120.46723 * 179.80323 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2010 -3.6130 0.1211 11 6 1.5965 -4.8725 -0.3333 12 6 1.4558 -4.8496 -1.8335 13 6 2.3755 -5.2784 -2.7165 14 6 1.8325 -5.0732 -4.0056 15 6 0.6137 -4.5308 -3.8334 16 8 0.3885 -4.4031 -2.5155 17 6 2.6970 -3.7340 1.4985 18 6 3.8406 -4.7147 1.5363 19 6 5.1407 -4.2499 1.4573 20 6 6.1905 -5.1560 1.4974 21 6 5.8958 -6.5045 1.6064 22 6 4.5632 -6.9019 1.6817 23 6 4.2311 -8.3434 1.8040 24 7 5.0991 -9.3637 1.8541 25 7 4.4093 -10.4483 1.9613 26 7 3.1577 -10.1477 1.9793 27 1 2.4289 -10.7836 2.0525 28 7 3.0251 -8.8688 1.8901 29 7 3.5884 -6.0031 1.6446 30 1 -0.4849 0.8400 0.0004 31 1 0.6937 -2.5969 -0.9321 32 1 0.5585 -2.5188 0.8410 33 1 2.2332 -5.7074 -0.0408 34 1 0.6130 -4.9885 0.1222 35 1 3.3426 -5.6996 -2.4850 36 1 2.3059 -5.3064 -4.9479 37 1 -0.0699 -4.2506 -4.6211 38 1 1.8934 -4.0878 2.1443 39 1 3.0416 -2.7604 1.8474 40 1 5.3371 -3.1916 1.3695 41 1 7.2145 -4.8175 1.4416 42 1 6.6883 -7.2375 1.6371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606349290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:19 Heat of formation + Delta-G solvation = 193.331376 kcal Electronic energy + Delta-G solvation = -28728.243680 eV Core-core repulsion = 24713.893131 eV Total energy + Delta-G solvation = -4014.350548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.61071 -41.98188 -40.25739 -36.78397 -34.60440 -33.77505 -32.81902 -32.50895 -32.24147 -31.37701 -29.89060 -27.38838 -26.39148 -25.07395 -24.73862 -23.87523 -22.22192 -21.95944 -21.20075 -20.73776 -19.67342 -19.22208 -17.30769 -17.05694 -16.77192 -16.42234 -16.24612 -15.71549 -15.43126 -15.01449 -14.42274 -14.30400 -14.25269 -13.93899 -13.49655 -13.35215 -12.90939 -12.57126 -12.40766 -12.29096 -12.18593 -11.90530 -11.79891 -11.54624 -11.48702 -11.28959 -11.18559 -11.08474 -11.03476 -10.67742 -10.58117 -9.97536 -9.81690 -9.47140 -9.40523 -9.22670 -8.78006 -8.41742 -7.93998 -7.38887 -6.01220 -4.03304 0.57360 1.01895 1.25589 2.06446 2.18848 2.29707 3.12692 3.28554 3.32978 3.37893 3.40104 3.56874 3.84208 3.92531 4.42880 4.63425 4.85921 4.96805 5.07627 5.08757 5.13331 5.30895 5.33281 5.34400 5.50664 5.51488 5.59179 5.69282 5.82808 5.94683 6.10270 6.14823 6.19465 6.27105 6.31872 6.35622 6.43093 6.62840 6.69020 7.00844 7.15873 7.29736 7.71244 7.78969 7.88389 8.02518 8.03414 8.11577 8.47123 9.03638 9.60536 11.09018 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.003545 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.035284 B = 7895.849552 C = 9419.261150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.506 4.506 8 H 0.064 0.936 9 C 0.190 3.810 10 N -0.524 5.524 11 C 0.124 3.876 12 C 0.026 3.974 13 C -0.210 4.210 14 C -0.218 4.218 15 C -0.049 4.049 16 O -0.169 6.169 17 C 0.110 3.890 18 C 0.153 3.847 19 C -0.128 4.128 20 C -0.078 4.078 21 C -0.134 4.134 22 C 0.189 3.811 23 C 0.226 3.774 24 N -0.263 5.263 25 N -0.054 5.054 26 N -0.230 5.230 27 H 0.476 0.524 28 N -0.259 5.259 29 N -0.452 5.452 30 H 0.261 0.739 31 H 0.036 0.964 32 H 0.001 0.999 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.195 0.805 38 H 0.047 0.953 39 H 0.107 0.893 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.898 -16.780 1.878 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.066 3.934 10 N -0.250 5.250 11 C -0.004 4.004 12 C -0.025 4.025 13 C -0.230 4.230 14 C -0.237 4.237 15 C -0.117 4.117 16 O -0.064 6.064 17 C -0.018 4.018 18 C 0.013 3.987 19 C -0.149 4.149 20 C -0.103 4.103 21 C -0.157 4.157 22 C 0.050 3.950 23 C -0.055 4.055 24 N -0.138 5.138 25 N -0.049 5.049 26 N -0.076 5.076 27 H 0.330 0.670 28 N -0.111 5.111 29 N -0.163 5.163 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.122 0.878 34 H 0.061 0.939 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.211 0.789 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.122 -17.345 1.826 18.839 hybrid contribution 0.147 1.042 0.077 1.055 sum 7.270 -16.303 1.903 17.951 Atomic orbital electron populations 1.69957 1.06039 1.26843 1.50760 1.24980 0.94826 0.99199 0.95486 0.86590 0.79462 0.82904 0.78616 1.20233 1.21443 1.20222 1.21080 0.93480 0.89671 1.50280 0.91822 1.19869 0.89641 0.86890 0.97014 1.62169 1.40329 1.03273 1.19192 1.20662 0.99309 0.95252 0.85191 1.22398 0.86090 0.99217 0.94830 1.21345 1.00796 1.08884 0.91989 1.21685 0.96507 1.07072 0.98482 1.23856 0.99283 1.05208 0.83379 1.84089 1.39620 1.64761 1.17970 1.20979 0.92936 0.96706 0.91194 1.21453 0.94939 0.89496 0.92769 1.22256 0.92789 1.02053 0.97779 1.21558 1.00183 0.92221 0.96374 1.21892 0.96110 0.97234 1.00446 1.17634 0.89753 0.86354 1.01273 1.23249 0.84487 0.95205 1.02521 1.76043 1.25996 0.94203 1.17520 1.78888 0.89693 1.21151 1.15174 1.47855 1.08536 1.05510 1.45708 0.66995 1.75212 1.24768 0.91842 1.19285 1.67289 1.35702 1.02246 1.11087 0.92886 0.94564 0.98132 0.87774 0.93935 0.84480 0.84225 0.78851 0.93474 0.87462 0.83583 0.84031 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.51 -13.73 8.56 -34.44 -0.29 -14.03 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.19 4.85 4.59 -4.97 -0.02 4.83 16 10 N -0.52 -10.99 4.36 -238.95 -1.04 -12.04 16 11 C 0.12 2.41 5.36 -4.97 -0.03 2.38 16 12 C 0.03 0.51 6.12 -35.62 -0.22 0.29 16 13 C -0.21 -3.81 10.81 -39.70 -0.43 -4.24 16 14 C -0.22 -3.56 10.91 -39.71 -0.43 -3.99 16 15 C -0.05 -0.82 12.09 29.41 0.36 -0.46 16 16 O -0.17 -3.46 9.80 5.70 0.06 -3.40 16 17 C 0.11 1.99 5.10 -4.97 -0.03 1.97 16 18 C 0.15 2.39 5.75 -82.61 -0.48 1.91 16 19 C -0.13 -1.68 9.72 -39.38 -0.38 -2.06 16 20 C -0.08 -0.84 10.17 -39.32 -0.40 -1.23 16 21 C -0.13 -1.55 9.74 -39.12 -0.38 -1.93 16 22 C 0.19 2.65 6.75 -82.94 -0.56 2.09 16 23 C 0.23 3.06 8.03 -156.30 -1.26 1.80 16 24 N -0.26 -3.34 12.21 32.15 0.39 -2.95 16 25 N -0.05 -0.58 13.47 60.35 0.81 0.23 16 26 N -0.23 -2.04 7.90 60.35 0.48 -1.57 16 27 H 0.48 1.87 8.96 -340.36 -3.05 -1.18 16 28 N -0.26 -3.26 12.38 32.17 0.40 -2.86 16 29 N -0.45 -7.07 8.42 -6.03 -0.05 -7.13 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.04 1.02 6.46 -51.93 -0.34 0.68 16 32 H 0.00 0.02 8.00 -51.93 -0.42 -0.39 16 33 H 0.10 1.91 5.60 -51.93 -0.29 1.61 16 34 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 37 H 0.19 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 39 H 0.11 1.97 7.34 -51.93 -0.38 1.59 16 40 H 0.15 1.78 8.06 -52.49 -0.42 1.35 16 41 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.14 1.37 7.88 -52.49 -0.41 0.96 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -33.83 368.65 -9.72 -43.55 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.39 Total: 1.23 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -4.65 Total: -11.20 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 1.72 Total: -51.89 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: 0.06 Total: -3.40 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.83 -9.72 -43.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.881 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 203.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds