Wall clock time and date at job start Sat Apr 11 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 119.99825 * 2 1 4 4 H 1.48501 * 109.46869 * 240.00493 * 3 2 1 5 5 H 1.48499 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.46740 * 120.00859 * 3 2 1 7 7 C 1.37871 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99830 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00285 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47081 * 185.06205 * 9 7 2 11 11 C 1.46905 * 110.99913 * 199.68096 * 10 9 7 12 12 C 1.50702 * 109.46889 * 71.88157 * 11 10 9 13 13 C 1.34514 * 125.78809 * 90.00298 * 12 11 10 14 14 C 1.41380 * 106.83541 * 179.97438 * 13 12 11 15 15 C 1.34506 * 106.84714 * 0.02562 * 14 13 12 16 16 O 1.34302 * 125.78832 * 269.68991 * 12 11 10 17 17 C 1.46904 * 111.00154 * 75.73048 * 10 9 7 18 18 C 1.50700 * 109.47075 * 189.99956 * 17 10 9 19 19 C 1.38297 * 119.55458 * 95.01741 * 18 17 10 20 20 C 1.38730 * 119.35233 * 179.76627 * 19 18 17 21 21 C 1.38462 * 118.51253 * 0.45902 * 20 19 18 22 22 C 1.39257 * 119.06707 * 359.52205 * 21 20 19 23 23 C 1.48427 * 119.71859 * 180.23379 * 22 21 20 24 24 N 1.34053 * 126.67968 * 0.02562 * 23 22 21 25 25 N 1.28983 * 107.26897 * 179.97438 * 24 23 22 26 26 N 1.28737 * 108.94896 * 0.02562 * 25 24 23 27 27 H 0.97000 * 125.34092 * 179.97438 * 26 25 24 28 28 N 1.28876 * 109.31480 * 359.72230 * 26 25 24 29 29 N 1.31735 * 119.55474 * 274.99875 * 18 17 10 30 30 H 0.96996 * 119.99622 * 359.97438 * 1 2 3 31 31 H 1.08995 * 109.47089 * 65.05666 * 9 7 2 32 32 H 1.09004 * 109.46499 * 305.05909 * 9 7 2 33 33 H 1.08993 * 109.47391 * 191.88270 * 11 10 9 34 34 H 1.09005 * 109.46980 * 311.88439 * 11 10 9 35 35 H 1.07996 * 126.57673 * 0.03560 * 13 12 11 36 36 H 1.08004 * 126.57017 * 179.97438 * 14 13 12 37 37 H 1.07998 * 125.78914 * 180.02562 * 15 14 13 38 38 H 1.09000 * 109.47122 * 69.99634 * 17 10 9 39 39 H 1.09006 * 109.46614 * 309.99527 * 17 10 9 40 40 H 1.07996 * 120.32544 * 0.02562 * 19 18 17 41 41 H 1.08000 * 120.74506 * 180.25893 * 20 19 18 42 42 H 1.07991 * 120.46723 * 179.80323 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2010 -3.6130 0.1211 11 6 1.5965 -4.8725 -0.3333 12 6 1.4558 -4.8496 -1.8335 13 6 2.3755 -5.2784 -2.7165 14 6 1.8325 -5.0732 -4.0056 15 6 0.6137 -4.5308 -3.8334 16 8 0.3885 -4.4031 -2.5155 17 6 2.6970 -3.7340 1.4985 18 6 3.8406 -4.7147 1.5363 19 6 5.1407 -4.2499 1.4573 20 6 6.1905 -5.1560 1.4974 21 6 5.8958 -6.5045 1.6064 22 6 4.5632 -6.9019 1.6817 23 6 4.2311 -8.3434 1.8040 24 7 5.0991 -9.3637 1.8541 25 7 4.4093 -10.4483 1.9613 26 7 3.1577 -10.1477 1.9793 27 1 2.4289 -10.7836 2.0525 28 7 3.0251 -8.8688 1.8901 29 7 3.5884 -6.0031 1.6446 30 1 -0.4849 0.8400 0.0004 31 1 0.6937 -2.5969 -0.9321 32 1 0.5585 -2.5188 0.8410 33 1 2.2332 -5.7074 -0.0408 34 1 0.6130 -4.9885 0.1222 35 1 3.3426 -5.6996 -2.4850 36 1 2.3059 -5.3064 -4.9479 37 1 -0.0699 -4.2506 -4.6211 38 1 1.8934 -4.0878 2.1443 39 1 3.0416 -2.7604 1.8474 40 1 5.3371 -3.1916 1.3695 41 1 7.2145 -4.8175 1.4416 42 1 6.6883 -7.2375 1.6371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606349290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:19 Heat of formation + Delta-G solvation = 169.673079 kcal Electronic energy + Delta-G solvation = -28729.269580 eV Core-core repulsion = 24713.893131 eV Total energy + Delta-G solvation = -4015.376449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.50202 -43.40676 -41.33013 -38.39026 -35.53320 -34.84029 -34.64643 -33.86980 -33.47568 -32.50063 -31.37154 -29.18592 -27.77072 -26.07268 -25.84227 -25.44097 -23.52305 -23.07293 -22.56925 -22.19531 -21.13914 -20.14072 -18.57147 -18.22882 -18.18068 -17.93307 -17.36931 -17.04837 -16.82493 -16.53883 -15.98497 -15.77435 -15.59016 -15.06630 -14.75957 -14.61847 -14.26370 -13.92179 -13.67182 -13.60881 -13.49620 -13.38815 -13.30001 -13.09681 -12.76380 -12.66085 -12.45067 -12.42016 -12.39007 -12.21295 -12.06658 -11.90307 -11.34998 -10.80356 -10.75265 -10.58095 -10.49539 -9.83497 -9.36240 -9.12532 -8.14172 -6.24850 -0.39703 0.12992 0.25765 0.87024 1.21396 1.36371 1.45142 1.48561 1.55907 1.77189 2.21401 2.35013 2.44534 2.76267 2.97798 3.18403 3.42219 3.65390 3.85313 3.87284 4.06193 4.09507 4.14624 4.19212 4.20623 4.39225 4.39898 4.53867 4.57955 4.62061 4.72837 4.86648 4.94073 5.05466 5.14637 5.18856 5.23416 5.27415 5.30371 5.56659 5.65782 5.69802 5.71150 6.06365 6.22190 6.34783 6.47537 6.85503 6.90035 7.09638 7.44387 8.96372 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.003545 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.035284 B = 7895.849552 C = 9419.261150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.516 4.516 8 H 0.070 0.930 9 C 0.209 3.791 10 N -0.522 5.522 11 C 0.133 3.867 12 C -0.013 4.013 13 C -0.206 4.206 14 C -0.218 4.218 15 C -0.055 4.055 16 O -0.202 6.202 17 C 0.115 3.885 18 C 0.133 3.867 19 C -0.131 4.131 20 C -0.060 4.060 21 C -0.123 4.123 22 C 0.173 3.827 23 C 0.214 3.786 24 N -0.274 5.274 25 N -0.050 5.050 26 N -0.203 5.203 27 H 0.494 0.506 28 N -0.280 5.280 29 N -0.476 5.476 30 H 0.262 0.738 31 H 0.004 0.996 32 H -0.032 1.032 33 H 0.117 0.883 34 H 0.025 0.975 35 H 0.150 0.850 36 H 0.175 0.825 37 H 0.232 0.768 38 H 0.034 0.966 39 H 0.100 0.900 40 H 0.155 0.845 41 H 0.184 0.816 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.854 -17.324 1.075 20.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.554 4.554 8 H 0.088 0.912 9 C 0.083 3.917 10 N -0.247 5.247 11 C 0.005 3.995 12 C -0.063 4.063 13 C -0.226 4.226 14 C -0.237 4.237 15 C -0.122 4.122 16 O -0.099 6.099 17 C -0.013 4.013 18 C -0.006 4.006 19 C -0.152 4.152 20 C -0.085 4.085 21 C -0.145 4.145 22 C 0.034 3.966 23 C -0.067 4.067 24 N -0.147 5.147 25 N -0.045 5.045 26 N -0.053 5.053 27 H 0.353 0.647 28 N -0.133 5.133 29 N -0.187 5.187 30 H 0.071 0.929 31 H 0.022 0.978 32 H -0.014 1.014 33 H 0.135 0.865 34 H 0.043 0.957 35 H 0.167 0.833 36 H 0.193 0.807 37 H 0.248 0.752 38 H 0.052 0.948 39 H 0.118 0.882 40 H 0.172 0.828 41 H 0.202 0.798 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.093 -17.933 1.035 20.604 hybrid contribution -0.796 1.035 0.310 1.342 sum 9.297 -16.898 1.345 19.333 Atomic orbital electron populations 1.70113 1.07895 1.27791 1.51900 1.25918 0.95630 1.03159 0.94905 0.85450 0.78122 0.77845 0.79297 1.19542 1.21439 1.18479 1.21391 0.93841 0.90389 1.49807 0.91168 1.19444 0.89614 0.88625 0.93973 1.62097 1.38642 1.02825 1.21117 1.20586 0.98465 0.94769 0.85689 1.22523 0.87118 1.01585 0.95080 1.21638 1.00730 1.07647 0.92626 1.22091 0.96210 1.06320 0.99048 1.24751 1.00449 1.04292 0.82660 1.84064 1.40393 1.65585 1.19818 1.20863 0.93759 0.97444 0.89267 1.20987 0.94853 0.89200 0.95570 1.22382 0.92255 1.03060 0.97521 1.21973 1.01371 0.91229 0.93945 1.22214 0.95555 0.98191 0.98519 1.17903 0.90545 0.86320 1.01830 1.23293 0.84844 0.95353 1.03233 1.76020 1.26288 0.94206 1.18234 1.78821 0.90157 1.20621 1.14932 1.47868 1.08753 1.04931 1.43792 0.64679 1.75169 1.25015 0.93184 1.19939 1.67098 1.37126 1.02485 1.12000 0.92888 0.97793 1.01413 0.86524 0.95693 0.83268 0.80720 0.75215 0.94779 0.88191 0.82776 0.79832 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.74 13.29 21.45 0.28 -56.45 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 43.55 29.54 68.60 2.03 45.58 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 7 C -0.52 -28.73 8.56 25.60 0.22 -28.51 16 8 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 9 C 0.21 11.33 4.59 85.56 0.39 11.72 16 10 N -0.52 -23.01 4.36 -909.90 -3.97 -26.98 16 11 C 0.13 5.46 5.36 85.56 0.46 5.92 16 12 C -0.01 -0.53 6.12 24.83 0.15 -0.38 16 13 C -0.21 -7.37 10.81 22.19 0.24 -7.13 16 14 C -0.22 -6.71 10.91 22.19 0.24 -6.47 16 15 C -0.05 -1.78 12.09 66.97 0.81 -0.97 16 16 O -0.20 -8.55 9.80 -2.50 -0.02 -8.58 16 17 C 0.11 4.38 5.10 85.56 0.44 4.81 16 18 C 0.13 4.18 5.75 42.59 0.24 4.43 16 19 C -0.13 -3.24 9.72 22.40 0.22 -3.03 16 20 C -0.06 -1.09 10.17 22.44 0.23 -0.86 16 21 C -0.12 -2.51 9.74 22.57 0.22 -2.29 16 22 C 0.17 4.68 6.75 41.98 0.28 4.96 16 23 C 0.21 5.58 8.03 137.36 1.10 6.68 16 24 N -0.27 -6.53 12.21 -52.20 -0.64 -7.17 16 25 N -0.05 -1.01 13.47 37.02 0.50 -0.51 16 26 N -0.20 -3.35 7.90 37.02 0.29 -3.06 16 27 H 0.49 3.19 8.96 -347.53 -3.12 0.08 16 28 N -0.28 -6.90 12.38 -52.14 -0.65 -7.55 16 29 N -0.48 -15.01 8.42 -172.99 -1.46 -16.46 16 30 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 31 H 0.00 0.24 6.46 -2.39 -0.02 0.23 16 32 H -0.03 -1.89 8.00 -2.38 -0.02 -1.91 16 33 H 0.12 4.46 5.60 -2.39 -0.01 4.45 16 34 H 0.02 1.08 8.05 -2.38 -0.02 1.06 16 35 H 0.15 4.83 8.06 -2.91 -0.02 4.81 16 36 H 0.18 4.03 8.06 -2.91 -0.02 4.00 16 37 H 0.23 5.33 8.06 -2.91 -0.02 5.31 16 38 H 0.03 1.35 8.12 -2.39 -0.02 1.33 16 39 H 0.10 3.87 7.34 -2.38 -0.02 3.85 16 40 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 41 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.17 2.61 7.88 -2.92 -0.02 2.58 16 Total: -1.00 -76.29 368.65 0.05 -76.25 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -2.03 Total: 15.49 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 5.71 Total: -10.55 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -5.63 Total: -118.19 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.02 Total: -8.58 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -76.29 0.05 -76.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.921 kcal (2) G-P(sol) polarization free energy of solvation -76.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds