Wall clock time and date at job start Sat Apr 11 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00022 * 2 1 4 4 H 1.48500 * 109.47348 * 264.89709 * 3 2 1 5 5 H 1.48493 * 109.47064 * 24.90191 * 3 2 1 6 6 H 1.48508 * 109.46821 * 144.89702 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99865 * 185.78471 * 7 2 1 9 9 C 1.50697 * 120.00294 * 5.78229 * 7 2 1 10 10 O 1.42900 * 110.91175 * 59.82272 * 9 7 2 11 11 C 1.55445 * 111.11621 * 295.83153 * 9 7 2 12 12 C 1.54328 * 102.96662 * 206.45839 * 11 9 7 13 13 N 1.47019 * 107.27212 * 22.19765 * 12 11 9 14 14 C 1.34774 * 125.64964 * 181.07873 * 13 12 11 15 15 O 1.21275 * 120.00091 * 179.97438 * 14 13 12 16 16 C 1.50702 * 119.99962 * 359.97398 * 14 13 12 17 17 N 1.46493 * 109.47025 * 180.02562 * 16 14 13 18 18 C 1.45752 * 117.94556 * 269.73285 * 17 16 14 19 19 C 1.53098 * 110.38807 * 160.74745 * 18 17 16 20 20 C 1.53343 * 108.53019 * 51.11199 * 19 18 17 21 21 C 1.53067 * 108.42997 * 292.31459 * 20 19 18 22 22 H 1.09005 * 109.39767 * 288.76978 * 21 20 19 23 23 C 1.50692 * 109.33300 * 168.98380 * 21 20 19 24 24 O 1.20826 * 120.00330 * 359.61427 * 23 21 20 25 25 O 1.34233 * 119.99877 * 179.61630 * 23 21 20 26 26 C 1.33354 * 117.95138 * 89.99807 * 17 16 14 27 27 O 1.21282 * 118.24214 * 2.24810 * 26 17 16 28 28 C 1.47428 * 108.70048 * 1.05289 * 13 12 11 29 29 H 0.96995 * 120.00038 * 359.97438 * 1 2 3 30 30 H 0.96702 * 114.00723 * 298.30824 * 10 9 7 31 31 H 1.09005 * 110.70509 * 88.08905 * 11 9 7 32 32 H 1.08999 * 110.85879 * 324.90259 * 11 9 7 33 33 H 1.08995 * 109.88544 * 262.77299 * 12 11 9 34 34 H 1.09006 * 110.00346 * 141.68203 * 12 11 9 35 35 H 1.09002 * 109.46605 * 299.99666 * 16 14 13 36 36 H 1.08998 * 109.47417 * 59.99676 * 16 14 13 37 37 H 1.09004 * 109.30218 * 281.23774 * 18 17 16 38 38 H 1.09007 * 109.30122 * 40.61692 * 18 17 16 39 39 H 1.09006 * 109.80881 * 291.32898 * 19 18 17 40 40 H 1.09000 * 109.68489 * 170.83283 * 19 18 17 41 41 H 1.09004 * 109.67578 * 172.57513 * 20 19 18 42 42 H 1.09008 * 109.70094 * 52.06740 * 20 19 18 43 43 H 0.96701 * 117.00175 * 179.97438 * 25 23 21 44 44 H 1.08998 * 110.36269 * 94.71821 * 28 13 12 45 45 H 1.09003 * 110.36467 * 216.92602 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6045 1.9842 -1.3945 5 1 1.3969 2.6813 0.5895 6 1 3.4887 1.4737 0.8052 7 6 2.0045 -1.1940 -0.0005 8 1 3.0804 -1.1964 0.0937 9 6 1.2569 -2.4958 -0.1326 10 8 0.5248 -2.5414 -1.3590 11 6 0.3193 -2.7292 1.0851 12 6 0.2035 -4.2670 1.1433 13 7 1.3746 -4.8196 0.4471 14 6 1.6326 -6.1293 0.2618 15 8 2.6337 -6.4724 -0.3304 16 6 0.6769 -7.1677 0.7907 17 7 1.1785 -8.5046 0.4635 18 6 0.7601 -9.1011 -0.7989 19 6 1.7128 -10.2317 -1.1962 20 6 1.8628 -11.1843 -0.0040 21 6 2.6083 -10.4487 1.1123 22 1 3.6525 -10.3206 0.8269 23 6 2.5319 -11.2584 2.3810 24 8 1.9366 -12.3098 2.3917 25 8 3.1251 -10.8116 3.4991 26 6 1.9849 -9.1019 1.3417 27 8 2.2275 -8.5268 2.3816 28 6 2.2197 -3.7036 -0.0154 29 1 -0.4850 0.8400 0.0004 30 1 -0.1511 -1.8546 -1.4395 31 1 -0.6566 -2.2752 0.9128 32 1 0.7675 -2.3412 1.9999 33 1 -0.7105 -4.5891 0.6445 34 1 0.1971 -4.6015 2.1808 35 1 0.5927 -7.0664 1.8727 36 1 -0.3030 -7.0253 0.3351 37 1 -0.2500 -9.4969 -0.6931 38 1 0.7650 -8.3379 -1.5771 39 1 2.6868 -9.8188 -1.4590 40 1 1.3037 -10.7741 -2.0485 41 1 2.4305 -12.0643 -0.3064 42 1 0.8775 -11.4873 0.3505 43 1 3.0485 -11.3654 4.2881 44 1 3.0036 -3.4946 0.7125 45 1 2.6568 -3.9359 -0.9865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:24 Heat of formation + Delta-G solvation = -199.953091 kcal Electronic energy + Delta-G solvation = -30710.990920 eV Core-core repulsion = 26307.691856 eV Total energy + Delta-G solvation = -4403.299064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.41991 -40.07697 -39.10607 -37.23793 -36.87712 -36.17549 -34.33702 -34.27925 -32.25299 -30.56130 -30.02099 -28.66924 -27.59267 -25.84261 -24.93294 -22.84759 -22.37115 -21.88284 -19.87773 -19.16550 -18.75138 -18.49188 -17.41383 -17.28008 -17.03023 -16.83730 -16.58025 -15.46150 -15.27764 -15.14508 -14.97975 -14.50113 -14.45406 -14.02220 -13.95489 -13.73449 -13.65373 -13.39624 -13.05647 -12.47189 -12.27519 -12.19011 -11.95080 -11.86302 -11.77187 -11.59013 -11.53655 -11.38752 -11.34631 -11.29832 -10.92762 -10.90697 -10.64450 -10.50195 -10.07077 -9.91564 -9.75857 -9.42171 -8.80224 -8.69955 -8.25546 -8.02835 -6.31777 -4.39171 1.75113 2.24732 2.60183 2.95791 3.01003 3.19492 3.26307 3.29399 3.59966 4.05404 4.17175 4.24997 4.38771 4.52495 4.80288 4.88550 4.97660 4.99277 5.06772 5.10069 5.25563 5.37225 5.44596 5.48967 5.52286 5.57381 5.69792 5.81067 5.86312 5.98513 6.04223 6.20776 6.26410 6.39273 6.62358 6.86828 6.92760 7.17021 7.26051 7.31500 7.61810 7.70332 7.90180 7.97834 8.09299 8.56870 8.63614 9.26738 9.33310 10.75351 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.002471 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.760296 B =11329.559905 C =11707.419693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.074 3.926 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.582 6.582 11 C -0.135 4.135 12 C 0.095 3.905 13 N -0.604 5.604 14 C 0.510 3.490 15 O -0.549 6.549 16 C 0.093 3.907 17 N -0.579 5.579 18 C 0.111 3.889 19 C -0.134 4.134 20 C -0.108 4.108 21 C -0.096 4.096 22 H 0.143 0.857 23 C 0.501 3.499 24 O -0.513 6.513 25 O -0.491 6.491 26 C 0.529 3.471 27 O -0.524 6.524 28 C 0.122 3.878 29 H 0.268 0.732 30 H 0.380 0.620 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.409 0.591 44 H 0.071 0.929 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 -19.588 1.292 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.390 6.390 11 C -0.174 4.174 12 C -0.028 4.028 13 N -0.337 5.337 14 C 0.297 3.703 15 O -0.427 6.427 16 C -0.033 4.033 17 N -0.311 5.311 18 C -0.012 4.012 19 C -0.172 4.172 20 C -0.146 4.146 21 C -0.118 4.118 22 H 0.160 0.840 23 C 0.343 3.657 24 O -0.402 6.402 25 O -0.301 6.301 26 C 0.315 3.685 27 O -0.400 6.400 28 C 0.000 4.000 29 H 0.078 0.922 30 H 0.229 0.771 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.267 0.733 44 H 0.089 0.911 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.861 -20.004 1.072 20.051 hybrid contribution -0.018 1.167 0.619 1.321 sum -0.879 -18.837 1.690 18.933 Atomic orbital electron populations 1.69739 1.05943 1.27665 1.49981 1.24979 0.95016 0.99525 0.93400 0.86441 0.79775 0.82303 0.78518 1.20310 1.21126 1.19757 1.21418 0.94177 0.90327 1.51473 0.91714 1.19646 0.87398 0.90851 0.81308 1.86138 1.54671 1.57927 1.40300 1.23232 1.03152 0.89516 1.01504 1.22253 0.87618 0.97764 0.95145 1.48598 1.24939 1.04876 1.55314 1.20468 0.87160 0.82361 0.80323 1.90645 1.28605 1.80405 1.43089 1.21388 0.96942 0.81047 1.03924 1.46784 1.47819 1.16321 1.20146 1.21560 0.97908 0.96513 0.85209 1.21927 1.01325 0.95859 0.98078 1.21641 1.01834 0.98227 0.92907 1.21128 1.05135 0.93332 0.92226 0.84001 1.22550 0.74645 0.83674 0.84856 1.90725 1.40524 1.23712 1.85249 1.84682 1.70548 1.53908 1.20920 1.19177 0.78967 0.86520 0.83864 1.90805 1.58982 1.64395 1.25829 1.22360 0.93534 0.84905 0.99186 0.92224 0.77069 0.89474 0.91270 0.92351 0.92627 0.86613 0.87400 0.91059 0.89803 0.90006 0.88783 0.89546 0.89714 0.73279 0.91071 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.45 10.81 55.43 0.60 -21.85 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 3 Si 0.90 19.97 29.54 -169.99 -5.02 14.94 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.72 8.26 -34.44 -0.28 -14.01 16 8 H 0.06 1.67 7.79 -52.49 -0.41 1.26 16 9 C 0.25 5.84 0.88 -89.47 -0.08 5.76 16 10 O -0.58 -14.24 13.16 -35.23 -0.46 -14.70 16 11 C -0.14 -2.82 5.42 -24.74 -0.13 -2.95 16 12 C 0.10 1.65 6.49 -3.06 -0.02 1.63 16 13 N -0.60 -11.71 3.33 -170.52 -0.57 -12.28 16 14 C 0.51 9.40 7.90 -10.99 -0.09 9.32 16 15 O -0.55 -11.72 16.67 5.56 0.09 -11.63 16 16 C 0.09 1.29 4.89 -5.20 -0.03 1.26 16 17 N -0.58 -7.34 2.30 -176.23 -0.41 -7.74 16 18 C 0.11 1.00 6.32 -4.39 -0.03 0.98 16 19 C -0.13 -0.97 6.03 -26.50 -0.16 -1.13 16 20 C -0.11 -0.85 4.78 -26.52 -0.13 -0.97 16 21 C -0.10 -1.01 2.86 -93.15 -0.27 -1.28 16 22 H 0.14 1.31 8.14 -51.93 -0.42 0.88 16 23 C 0.50 5.63 7.51 36.00 0.27 5.90 16 24 O -0.51 -6.47 16.54 -18.75 -0.31 -6.78 16 25 O -0.49 -5.14 12.39 -45.24 -0.56 -5.71 16 26 C 0.53 7.36 7.01 -11.87 -0.08 7.28 16 27 O -0.52 -9.16 14.82 -11.60 -0.17 -9.33 16 28 C 0.12 2.70 6.07 -2.53 -0.02 2.68 16 29 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 30 H 0.38 9.24 7.57 45.56 0.34 9.59 16 31 H 0.09 1.88 7.57 -51.93 -0.39 1.49 16 32 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.12 1.62 7.13 -51.93 -0.37 1.25 16 36 H 0.11 1.16 8.01 -51.93 -0.42 0.75 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.70 7.71 -51.92 -0.40 0.30 16 43 H 0.41 2.26 9.10 45.56 0.41 2.68 16 44 H 0.07 1.57 8.03 -51.93 -0.42 1.15 16 45 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 LS Contribution 372.98 15.07 5.62 5.62 Total: -1.00 -33.65 372.98 -7.32 -40.97 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -4.99 Total: 12.27 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: -1.13 Total: 16.22 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -0.37 Total: -41.87 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -1.41 Total: -48.15 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.65 -7.32 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.987 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds