Wall clock time and date at job start Sat Apr 11 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00022 * 2 1 4 4 H 1.48500 * 109.47348 * 264.89709 * 3 2 1 5 5 H 1.48493 * 109.47064 * 24.90191 * 3 2 1 6 6 H 1.48508 * 109.46821 * 144.89702 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99865 * 185.78471 * 7 2 1 9 9 C 1.50697 * 120.00294 * 5.78229 * 7 2 1 10 10 O 1.42900 * 110.91175 * 59.82272 * 9 7 2 11 11 C 1.55445 * 111.11621 * 295.83153 * 9 7 2 12 12 C 1.54328 * 102.96662 * 206.45839 * 11 9 7 13 13 N 1.47019 * 107.27212 * 22.19765 * 12 11 9 14 14 C 1.34774 * 125.64964 * 181.07873 * 13 12 11 15 15 O 1.21275 * 120.00091 * 179.97438 * 14 13 12 16 16 C 1.50702 * 119.99962 * 359.97398 * 14 13 12 17 17 N 1.46493 * 109.47025 * 180.02562 * 16 14 13 18 18 C 1.45752 * 117.94556 * 269.73285 * 17 16 14 19 19 C 1.53098 * 110.38807 * 160.74745 * 18 17 16 20 20 C 1.53343 * 108.53019 * 51.11199 * 19 18 17 21 21 C 1.53067 * 108.42997 * 292.31459 * 20 19 18 22 22 H 1.09005 * 109.39767 * 288.76978 * 21 20 19 23 23 C 1.50692 * 109.33300 * 168.98380 * 21 20 19 24 24 O 1.20826 * 120.00330 * 359.61427 * 23 21 20 25 25 O 1.34233 * 119.99877 * 179.61630 * 23 21 20 26 26 C 1.33354 * 117.95138 * 89.99807 * 17 16 14 27 27 O 1.21282 * 118.24214 * 2.24810 * 26 17 16 28 28 C 1.47428 * 108.70048 * 1.05289 * 13 12 11 29 29 H 0.96995 * 120.00038 * 359.97438 * 1 2 3 30 30 H 0.96702 * 114.00723 * 298.30824 * 10 9 7 31 31 H 1.09005 * 110.70509 * 88.08905 * 11 9 7 32 32 H 1.08999 * 110.85879 * 324.90259 * 11 9 7 33 33 H 1.08995 * 109.88544 * 262.77299 * 12 11 9 34 34 H 1.09006 * 110.00346 * 141.68203 * 12 11 9 35 35 H 1.09002 * 109.46605 * 299.99666 * 16 14 13 36 36 H 1.08998 * 109.47417 * 59.99676 * 16 14 13 37 37 H 1.09004 * 109.30218 * 281.23774 * 18 17 16 38 38 H 1.09007 * 109.30122 * 40.61692 * 18 17 16 39 39 H 1.09006 * 109.80881 * 291.32898 * 19 18 17 40 40 H 1.09000 * 109.68489 * 170.83283 * 19 18 17 41 41 H 1.09004 * 109.67578 * 172.57513 * 20 19 18 42 42 H 1.09008 * 109.70094 * 52.06740 * 20 19 18 43 43 H 0.96701 * 117.00175 * 179.97438 * 25 23 21 44 44 H 1.08998 * 110.36269 * 94.71821 * 28 13 12 45 45 H 1.09003 * 110.36467 * 216.92602 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6045 1.9842 -1.3945 5 1 1.3969 2.6813 0.5895 6 1 3.4887 1.4737 0.8052 7 6 2.0045 -1.1940 -0.0005 8 1 3.0804 -1.1964 0.0937 9 6 1.2569 -2.4958 -0.1326 10 8 0.5248 -2.5414 -1.3590 11 6 0.3193 -2.7292 1.0851 12 6 0.2035 -4.2670 1.1433 13 7 1.3746 -4.8196 0.4471 14 6 1.6326 -6.1293 0.2618 15 8 2.6337 -6.4724 -0.3304 16 6 0.6769 -7.1677 0.7907 17 7 1.1785 -8.5046 0.4635 18 6 0.7601 -9.1011 -0.7989 19 6 1.7128 -10.2317 -1.1962 20 6 1.8628 -11.1843 -0.0040 21 6 2.6083 -10.4487 1.1123 22 1 3.6525 -10.3206 0.8269 23 6 2.5319 -11.2584 2.3810 24 8 1.9366 -12.3098 2.3917 25 8 3.1251 -10.8116 3.4991 26 6 1.9849 -9.1019 1.3417 27 8 2.2275 -8.5268 2.3816 28 6 2.2197 -3.7036 -0.0154 29 1 -0.4850 0.8400 0.0004 30 1 -0.1511 -1.8546 -1.4395 31 1 -0.6566 -2.2752 0.9128 32 1 0.7675 -2.3412 1.9999 33 1 -0.7105 -4.5891 0.6445 34 1 0.1971 -4.6015 2.1808 35 1 0.5927 -7.0664 1.8727 36 1 -0.3030 -7.0253 0.3351 37 1 -0.2500 -9.4969 -0.6931 38 1 0.7650 -8.3379 -1.5771 39 1 2.6868 -9.8188 -1.4590 40 1 1.3037 -10.7741 -2.0485 41 1 2.4305 -12.0643 -0.3064 42 1 0.8775 -11.4873 0.3505 43 1 3.0485 -11.3654 4.2881 44 1 3.0036 -3.4946 0.7125 45 1 2.6568 -3.9359 -0.9865 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608181425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:24 Heat of formation + Delta-G solvation = -225.117581 kcal Electronic energy + Delta-G solvation = -30712.082134 eV Core-core repulsion = 26307.691856 eV Total energy + Delta-G solvation = -4404.390279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35955 -41.20110 -40.43699 -38.86171 -37.77425 -37.06279 -36.07832 -35.19941 -34.20590 -31.79939 -31.21678 -30.21637 -28.95996 -26.82155 -26.49243 -24.10922 -23.35084 -22.88951 -21.60663 -20.46391 -19.75298 -19.34677 -19.12966 -18.38280 -18.24135 -17.90954 -17.60878 -16.92469 -16.70996 -16.59706 -16.26414 -16.01965 -15.45763 -15.30747 -15.04644 -14.90233 -14.64326 -14.50904 -14.25395 -14.06674 -13.79426 -13.55450 -13.26723 -13.10400 -12.98893 -12.95260 -12.66531 -12.63090 -12.48047 -12.45364 -12.29462 -12.26790 -12.00688 -11.85183 -11.74829 -11.27372 -11.15365 -10.90562 -10.68044 -10.14383 -9.83843 -9.59078 -8.24421 -6.38107 0.88376 1.23507 1.41925 1.45258 1.52538 1.58081 1.69669 2.14179 2.19835 2.40823 2.99930 3.26473 3.43564 3.51447 3.74106 3.81977 3.88789 4.02187 4.06775 4.19016 4.29967 4.32554 4.35461 4.39741 4.44035 4.57370 4.58261 4.70494 4.80713 4.88112 4.96570 5.01187 5.15077 5.17515 5.28314 5.29843 5.45249 5.47790 5.56265 5.77453 6.08303 6.22357 6.58524 6.65032 6.88816 6.90959 7.10787 7.32246 7.38234 8.80997 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.002471 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.760296 B =11329.559905 C =11707.419693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.040 3.960 3 Si 0.956 3.044 4 H -0.279 1.279 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.564 4.564 8 H 0.051 0.949 9 C 0.237 3.763 10 O -0.589 6.589 11 C -0.126 4.126 12 C 0.102 3.898 13 N -0.609 5.609 14 C 0.504 3.496 15 O -0.585 6.585 16 C 0.101 3.899 17 N -0.579 5.579 18 C 0.100 3.900 19 C -0.128 4.128 20 C -0.100 4.100 21 C -0.097 4.097 22 H 0.152 0.848 23 C 0.504 3.496 24 O -0.529 6.529 25 O -0.502 6.502 26 C 0.520 3.480 27 O -0.569 6.569 28 C 0.128 3.872 29 H 0.271 0.729 30 H 0.378 0.622 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.427 0.573 44 H 0.063 0.937 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -20.994 1.130 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.162 4.162 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.203 1.203 6 H -0.200 1.200 7 C -0.602 4.602 8 H 0.069 0.931 9 C 0.197 3.803 10 O -0.397 6.397 11 C -0.165 4.165 12 C -0.020 4.020 13 N -0.342 5.342 14 C 0.293 3.707 15 O -0.466 6.466 16 C -0.026 4.026 17 N -0.309 5.309 18 C -0.021 4.021 19 C -0.165 4.165 20 C -0.138 4.138 21 C -0.118 4.118 22 H 0.169 0.831 23 C 0.347 3.653 24 O -0.419 6.419 25 O -0.314 6.314 26 C 0.308 3.692 27 O -0.448 6.448 28 C 0.005 3.995 29 H 0.081 0.919 30 H 0.227 0.773 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.135 0.865 36 H 0.164 0.836 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.144 0.856 41 H 0.123 0.877 42 H 0.103 0.897 43 H 0.288 0.712 44 H 0.081 0.919 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.196 -21.436 0.907 21.568 hybrid contribution 0.427 1.624 0.660 1.805 sum -1.769 -19.812 1.567 19.953 Atomic orbital electron populations 1.69787 1.06432 1.28356 1.49501 1.25547 0.95859 1.01787 0.93029 0.85607 0.78702 0.79282 0.78205 1.20437 1.20266 1.19986 1.21635 0.93905 0.91999 1.52676 0.93063 1.19747 0.88114 0.90521 0.81916 1.86123 1.54680 1.57753 1.41148 1.23007 1.01692 0.92285 0.99522 1.22296 0.87737 0.94988 0.96988 1.48674 1.25089 1.04824 1.55583 1.21400 0.87395 0.82479 0.79403 1.90620 1.30376 1.80873 1.44703 1.21413 0.96997 0.80204 1.03971 1.47012 1.47150 1.15675 1.21094 1.21903 0.99972 0.96844 0.83352 1.21941 1.00462 0.95278 0.98838 1.21658 1.01685 0.98530 0.91892 1.21247 1.05789 0.91809 0.92980 0.83096 1.22643 0.74192 0.83378 0.85130 1.90714 1.41261 1.24390 1.85547 1.84658 1.70309 1.54651 1.21766 1.19782 0.78552 0.87499 0.83407 1.90774 1.60557 1.65797 1.27702 1.22069 0.93648 0.85919 0.97913 0.91929 0.77311 0.90243 0.92399 0.89660 0.89814 0.86536 0.83648 0.87973 0.90562 0.91338 0.85590 0.87724 0.89689 0.71168 0.91880 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.06 10.81 21.45 0.23 -44.82 16 2 C 0.04 2.00 5.29 84.65 0.45 2.45 16 3 Si 0.96 40.97 29.54 68.60 2.03 42.99 16 4 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.56 -29.48 8.26 25.60 0.21 -29.27 16 8 H 0.05 2.73 7.79 -2.91 -0.02 2.71 16 9 C 0.24 11.29 0.88 -10.05 -0.01 11.29 16 10 O -0.59 -29.05 13.16 -148.98 -1.96 -31.01 16 11 C -0.13 -5.21 5.42 31.89 0.17 -5.03 16 12 C 0.10 3.33 6.49 86.73 0.56 3.89 16 13 N -0.61 -23.25 3.33 -811.81 -2.70 -25.95 16 14 C 0.50 18.23 7.90 87.66 0.69 18.92 16 15 O -0.58 -25.20 16.67 -3.01 -0.05 -25.25 16 16 C 0.10 2.57 4.89 85.63 0.42 2.98 16 17 N -0.58 -13.62 2.30 -830.65 -1.91 -15.53 16 18 C 0.10 1.55 6.32 86.55 0.55 2.10 16 19 C -0.13 -1.49 6.03 30.74 0.19 -1.30 16 20 C -0.10 -1.30 4.78 30.73 0.15 -1.15 16 21 C -0.10 -1.90 2.86 -12.43 -0.04 -1.93 16 22 H 0.15 2.64 8.14 -2.38 -0.02 2.62 16 23 C 0.50 10.76 7.51 71.23 0.54 11.29 16 24 O -0.53 -12.55 16.54 21.96 0.36 -12.18 16 25 O -0.50 -10.18 12.39 -45.73 -0.57 -10.75 16 26 C 0.52 13.96 7.01 87.71 0.61 14.58 16 27 O -0.57 -19.77 14.82 13.36 0.20 -19.57 16 28 C 0.13 5.79 6.07 86.85 0.53 6.32 16 29 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 30 H 0.38 18.53 7.57 -74.06 -0.56 17.97 16 31 H 0.08 3.38 7.57 -2.38 -0.02 3.36 16 32 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 33 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.12 3.04 7.13 -2.39 -0.02 3.02 16 36 H 0.15 2.60 8.01 -2.39 -0.02 2.58 16 37 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.33 8.10 -2.38 -0.02 1.31 16 39 H 0.07 1.01 8.12 -2.38 -0.02 0.99 16 40 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.08 1.14 7.71 -2.38 -0.02 1.13 16 43 H 0.43 4.40 9.10 -74.06 -0.67 3.73 16 44 H 0.06 2.91 8.03 -2.39 -0.02 2.89 16 45 H 0.05 2.30 8.03 -2.39 -0.02 2.28 16 Total: -1.00 -74.01 372.98 0.46 -73.56 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.19 Total: 33.39 kcal Atomic # 6 Polarization: 30.11 SS G_CDS: 5.02 Total: 35.13 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -4.38 Total: -86.31 kcal Atomic # 8 Polarization: -96.75 SS G_CDS: -2.02 Total: -98.77 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 42.99 kcal Total: -74.01 0.46 -73.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.559 kcal (2) G-P(sol) polarization free energy of solvation -74.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds