Wall clock time and date at job start Sat Apr 11 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00185 * 2 1 4 4 H 1.48494 * 109.47217 * 89.99862 * 3 2 1 5 5 H 1.48502 * 109.47044 * 209.99962 * 3 2 1 6 6 H 1.48497 * 109.47017 * 329.99601 * 3 2 1 7 7 C 1.37879 * 119.99679 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99894 * 173.68272 * 7 2 1 9 9 C 1.50705 * 119.99885 * 353.67966 * 7 2 1 10 10 O 1.42896 * 110.88833 * 61.13255 * 9 7 2 11 11 C 1.55154 * 111.00099 * 185.01888 * 9 7 2 12 12 C 1.54322 * 102.94439 * 153.57545 * 11 9 7 13 13 N 1.47015 * 107.26980 * 337.80446 * 12 11 9 14 14 C 1.34784 * 125.64978 * 178.97701 * 13 12 11 15 15 O 1.21278 * 119.99730 * 179.97438 * 14 13 12 16 16 C 1.50695 * 119.99840 * 359.97036 * 14 13 12 17 17 N 1.46497 * 109.46859 * 180.02562 * 16 14 13 18 18 C 1.45763 * 117.94702 * 269.73559 * 17 16 14 19 19 C 1.52735 * 110.58718 * 198.89461 * 18 17 16 20 20 C 1.53348 * 108.82448 * 309.61398 * 19 18 17 21 21 C 1.53062 * 108.42303 * 67.37066 * 20 19 18 22 22 H 1.08994 * 109.33594 * 71.18781 * 21 20 19 23 23 C 1.50707 * 109.40030 * 190.97587 * 21 20 19 24 24 O 1.20819 * 119.99886 * 0.42578 * 23 21 20 25 25 O 1.34231 * 120.00092 * 180.43229 * 23 21 20 26 26 C 1.33352 * 117.94617 * 90.00823 * 17 16 14 27 27 O 1.21279 * 118.24839 * 357.79021 * 26 17 16 28 28 C 1.47474 * 108.72375 * 358.97623 * 13 12 11 29 29 H 0.97000 * 120.00127 * 176.00151 * 1 2 3 30 30 H 0.96700 * 113.99477 * 65.70228 * 10 9 7 31 31 H 1.09004 * 110.71966 * 271.94083 * 11 9 7 32 32 H 1.09004 * 110.72425 * 35.03058 * 11 9 7 33 33 H 1.09001 * 109.88188 * 97.22319 * 12 11 9 34 34 H 1.08994 * 109.88368 * 218.38304 * 12 11 9 35 35 H 1.09004 * 109.47357 * 300.00270 * 16 14 13 36 36 H 1.08996 * 109.47190 * 60.00179 * 16 14 13 37 37 H 1.08996 * 109.29914 * 319.39575 * 18 17 16 38 38 H 1.09004 * 109.29409 * 78.76365 * 18 17 16 39 39 H 1.09006 * 109.66273 * 189.73291 * 19 18 17 40 40 H 1.09004 * 109.53280 * 69.41525 * 19 18 17 41 41 H 1.09007 * 109.66892 * 307.63917 * 20 19 18 42 42 H 1.08996 * 109.70436 * 187.12435 * 20 19 18 43 43 H 0.96701 * 116.99810 * 180.02562 * 25 23 21 44 44 H 1.09005 * 110.34256 * 265.25265 * 28 13 12 45 45 H 1.08995 * 110.40379 * 142.91883 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0796 -1.1970 -0.1024 9 6 1.2578 -2.4952 0.1448 10 8 0.3374 -2.6766 -0.9331 11 6 2.2401 -3.6920 0.2449 12 6 1.4297 -4.7389 1.0378 13 7 0.3911 -4.0135 1.7837 14 6 -0.5377 -4.5738 2.5836 15 8 -1.3493 -3.8748 3.1525 16 6 -0.5679 -6.0688 2.7710 17 7 -1.6612 -6.4252 3.6786 18 6 -1.3714 -6.4873 5.1058 19 6 -2.4392 -7.2997 5.8357 20 6 -3.8223 -6.7746 5.4322 21 6 -4.0512 -7.1007 3.9543 22 1 -4.2032 -8.1740 3.8409 23 6 -5.2730 -6.3675 3.4634 24 8 -5.8910 -5.6520 4.2156 25 8 -5.6745 -6.5095 2.1904 26 6 -2.8577 -6.6778 3.1468 27 8 -2.9890 -6.5601 1.9469 28 6 0.5335 -2.5710 1.5120 29 1 -0.4850 -0.8380 -0.0586 30 1 0.7592 -2.7835 -1.7966 31 1 2.4911 -4.0688 -0.7467 32 1 3.1417 -3.4067 0.7870 33 1 0.9665 -5.4471 0.3508 34 1 2.0842 -5.2665 1.7316 35 1 -0.7241 -6.5527 1.8069 36 1 0.3797 -6.4010 3.1950 37 1 -0.3971 -6.9523 5.2557 38 1 -1.3513 -5.4766 5.5136 39 1 -2.3079 -7.1942 6.9127 40 1 -2.3514 -8.3500 5.5577 41 1 -3.8627 -5.6955 5.5805 42 1 -4.5895 -7.2572 6.0376 43 1 -6.4634 -6.0189 1.9217 44 1 1.1357 -2.0970 2.2872 45 1 -0.4463 -2.0976 1.4491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:30 Heat of formation + Delta-G solvation = -199.703764 kcal Electronic energy + Delta-G solvation = -31147.816901 eV Core-core repulsion = 26744.528648 eV Total energy + Delta-G solvation = -4403.288253 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36528 -40.00370 -39.16014 -37.37757 -36.85030 -36.08250 -34.47847 -34.26488 -32.33959 -30.59905 -30.22448 -28.60139 -27.27348 -25.80957 -24.66085 -22.84226 -22.43216 -21.89357 -20.11378 -19.34995 -18.53313 -18.37661 -17.59141 -17.34738 -17.15016 -16.77674 -16.56552 -15.63110 -15.28210 -15.04984 -14.90534 -14.71432 -14.28755 -13.97823 -13.80351 -13.77784 -13.57347 -13.37222 -13.11838 -12.42767 -12.31331 -12.26132 -12.20848 -11.95226 -11.83090 -11.67438 -11.58737 -11.45737 -11.35160 -11.07532 -10.81300 -10.77814 -10.64595 -10.14666 -10.11205 -9.90346 -9.77518 -9.39905 -8.80437 -8.56410 -8.14116 -8.03170 -6.37098 -4.27327 1.82142 2.35958 2.69358 2.93736 3.02692 3.40189 3.41640 3.58279 3.59175 4.06461 4.21075 4.36439 4.46527 4.47388 4.76049 4.85126 4.97347 5.01236 5.10455 5.19698 5.23398 5.27033 5.34191 5.38747 5.41843 5.49830 5.58658 5.59231 5.72380 5.86917 5.98452 6.10183 6.24500 6.36437 6.53798 6.63375 6.77181 6.86461 7.17061 7.20245 7.75173 7.89084 7.92921 8.06892 8.26954 8.59673 8.80207 8.97712 9.58777 10.99409 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016733 B = 0.002995 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.969813 B = 9345.716578 C = 9805.667832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.038 3.962 3 Si 1.067 2.933 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.640 4.640 8 H 0.056 0.944 9 C 0.232 3.768 10 O -0.570 6.570 11 C -0.151 4.151 12 C 0.103 3.897 13 N -0.610 5.610 14 C 0.508 3.492 15 O -0.540 6.540 16 C 0.095 3.905 17 N -0.580 5.580 18 C 0.108 3.892 19 C -0.131 4.131 20 C -0.112 4.112 21 C -0.093 4.093 22 H 0.140 0.860 23 C 0.500 3.500 24 O -0.509 6.509 25 O -0.493 6.493 26 C 0.526 3.474 27 O -0.519 6.519 28 C 0.127 3.873 29 H 0.291 0.709 30 H 0.359 0.641 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.411 0.589 44 H 0.072 0.928 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 -19.543 10.007 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.173 4.173 3 Si 0.895 3.105 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.678 4.678 8 H 0.075 0.925 9 C 0.192 3.808 10 O -0.375 6.375 11 C -0.189 4.189 12 C -0.020 4.020 13 N -0.344 5.344 14 C 0.294 3.706 15 O -0.418 6.418 16 C -0.031 4.031 17 N -0.312 5.312 18 C -0.015 4.015 19 C -0.169 4.169 20 C -0.149 4.149 21 C -0.115 4.115 22 H 0.157 0.843 23 C 0.341 3.659 24 O -0.397 6.397 25 O -0.303 6.303 26 C 0.311 3.689 27 O -0.394 6.394 28 C 0.006 3.994 29 H 0.104 0.896 30 H 0.205 0.795 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.269 0.731 44 H 0.090 0.910 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.733 -17.505 10.613 20.652 hybrid contribution 0.279 -1.390 -0.654 1.561 sum -2.453 -18.894 9.959 21.499 Atomic orbital electron populations 1.70617 1.06989 1.33151 1.41360 1.25816 0.96445 1.02485 0.92509 0.83588 0.74672 0.75282 0.76911 1.21283 1.21437 1.20986 1.22157 0.94679 0.91333 1.59633 0.92536 1.19959 0.84939 0.91860 0.84045 1.86434 1.37904 1.95543 1.17640 1.23259 0.99385 0.96861 0.99402 1.22013 0.89705 0.95659 0.94669 1.48741 1.30603 1.09915 1.45148 1.20530 0.80530 0.90222 0.79309 1.90689 1.38811 1.63802 1.48488 1.21393 0.90735 0.93766 0.97207 1.46762 1.09362 1.67520 1.07594 1.21525 0.99049 1.01668 0.79254 1.21851 0.93494 1.00031 1.01501 1.21647 0.97837 1.04228 0.91220 1.21075 0.90042 1.03130 0.97236 0.84291 1.22450 0.84695 0.78870 0.79914 1.90736 1.55641 1.36524 1.56771 1.84624 1.48502 1.67989 1.29198 1.19232 0.83347 0.78023 0.88251 1.90833 1.82895 1.50898 1.14754 1.22572 1.01846 0.78094 0.96893 0.89575 0.79515 0.91194 0.90514 0.92067 0.92467 0.86704 0.87617 0.90092 0.90671 0.88703 0.90576 0.89308 0.89506 0.73080 0.90988 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.28 55.43 0.74 -26.03 16 2 C 0.04 1.05 5.27 -17.82 -0.09 0.96 16 3 Si 1.07 24.45 29.91 -169.99 -5.08 19.36 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.64 -16.87 8.25 -34.44 -0.28 -17.15 16 8 H 0.06 1.46 7.80 -52.49 -0.41 1.05 16 9 C 0.23 5.49 0.70 -89.62 -0.06 5.43 16 10 O -0.57 -13.99 11.61 -35.23 -0.41 -14.40 16 11 C -0.15 -2.77 6.11 -24.90 -0.15 -2.92 16 12 C 0.10 1.67 6.49 -3.07 -0.02 1.65 16 13 N -0.61 -12.30 3.33 -170.49 -0.57 -12.87 16 14 C 0.51 9.98 7.90 -10.98 -0.09 9.89 16 15 O -0.54 -12.87 16.68 5.56 0.09 -12.78 16 16 C 0.10 1.33 4.88 -5.20 -0.03 1.30 16 17 N -0.58 -7.55 2.31 -176.45 -0.41 -7.95 16 18 C 0.11 0.97 6.38 -4.58 -0.03 0.94 16 19 C -0.13 -0.82 6.01 -26.69 -0.16 -0.98 16 20 C -0.11 -0.99 4.79 -26.52 -0.13 -1.12 16 21 C -0.09 -1.03 2.86 -93.14 -0.27 -1.29 16 22 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 23 C 0.50 6.77 7.51 36.01 0.27 7.04 16 24 O -0.51 -7.96 16.55 -18.74 -0.31 -8.27 16 25 O -0.49 -6.23 12.39 -45.24 -0.56 -6.79 16 26 C 0.53 7.71 7.01 -11.87 -0.08 7.63 16 27 O -0.52 -9.71 14.86 -11.60 -0.17 -9.88 16 28 C 0.13 3.10 5.47 -2.50 -0.01 3.09 16 29 H 0.29 9.03 4.99 -40.82 -0.20 8.83 16 30 H 0.36 7.56 9.10 45.56 0.41 7.97 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.08 1.37 8.03 -51.93 -0.42 0.96 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.12 1.64 7.20 -51.93 -0.37 1.26 16 36 H 0.11 1.04 7.86 -51.93 -0.41 0.63 16 37 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.36 8.12 -51.93 -0.42 -0.06 16 41 H 0.09 1.03 7.72 -51.93 -0.40 0.63 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.41 3.38 9.10 45.56 0.41 3.79 16 44 H 0.07 1.78 8.03 -51.93 -0.42 1.37 16 45 H 0.08 2.19 6.79 -51.93 -0.35 1.83 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -39.47 371.50 -6.96 -46.43 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -4.74 Total: 13.12 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: -1.13 Total: 14.46 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.24 Total: -46.85 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -1.36 Total: -52.12 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.08 Total: 19.36 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.47 -6.96 -46.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.275 kcal (2) G-P(sol) polarization free energy of solvation -39.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds