Wall clock time and date at job start Sat Apr 11 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99702 * 2 1 4 4 H 1.48493 * 109.47014 * 269.99919 * 3 2 1 5 5 H 1.48501 * 109.46843 * 30.00328 * 3 2 1 6 6 H 1.48498 * 109.46694 * 149.99999 * 3 2 1 7 7 C 1.37872 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99990 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00164 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64162 * 56.86172 * 9 7 2 11 11 C 1.55161 * 110.71904 * 293.52468 * 9 7 2 12 12 C 1.55137 * 101.48526 * 205.96997 * 11 9 7 13 13 N 1.47423 * 104.71983 * 37.29517 * 12 11 9 14 14 C 1.34777 * 125.64829 * 155.82193 * 13 12 11 15 15 O 1.21283 * 120.00463 * 179.69258 * 14 13 12 16 16 C 1.50700 * 119.99675 * 359.41380 * 14 13 12 17 17 N 1.46499 * 109.47257 * 180.27849 * 16 14 13 18 18 C 1.45755 * 117.94723 * 269.73943 * 17 16 14 19 19 C 1.52739 * 110.58989 * 198.89161 * 18 17 16 20 20 C 1.53353 * 108.81838 * 309.60948 * 19 18 17 21 21 C 1.53071 * 108.42563 * 67.36774 * 20 19 18 22 22 H 1.09000 * 109.39804 * 71.22812 * 21 20 19 23 23 C 1.50698 * 109.40115 * 190.96833 * 21 20 19 24 24 O 1.20828 * 119.99796 * 0.43771 * 23 21 20 25 25 O 1.34227 * 120.00060 * 180.42665 * 23 21 20 26 26 C 1.33355 * 117.94702 * 89.99684 * 17 16 14 27 27 O 1.21283 * 118.24912 * 357.75631 * 26 17 16 28 28 C 1.47019 * 108.70731 * 335.55081 * 13 12 11 29 29 H 0.96994 * 120.00401 * 0.02562 * 1 2 3 30 30 H 0.96702 * 113.99785 * 303.14333 * 10 9 7 31 31 H 1.08994 * 111.00643 * 324.20777 * 11 9 7 32 32 H 1.08997 * 111.00606 * 88.02681 * 11 9 7 33 33 H 1.09007 * 110.49426 * 278.45664 * 12 11 9 34 34 H 1.08993 * 110.34231 * 156.05913 * 12 11 9 35 35 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 36 36 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 37 37 H 1.09002 * 109.29600 * 319.38517 * 18 17 16 38 38 H 1.09005 * 109.30131 * 78.75807 * 18 17 16 39 39 H 1.08992 * 109.66462 * 189.73367 * 19 18 17 40 40 H 1.08997 * 109.40033 * 69.32903 * 19 18 17 41 41 H 1.08998 * 109.67220 * 307.63486 * 20 19 18 42 42 H 1.08997 * 109.70587 * 187.12285 * 20 19 18 43 43 H 0.96695 * 117.00253 * 180.02562 * 25 23 21 44 44 H 1.09003 * 109.88210 * 120.70469 * 28 13 12 45 45 H 1.08999 * 109.89027 * 241.71929 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.3657 -2.5697 -1.1200 11 6 0.4755 -2.6852 1.3304 12 6 0.3777 -4.2311 1.4173 13 7 1.6657 -4.7181 0.8909 14 6 2.2311 -5.9080 1.1754 15 8 3.2960 -6.2078 0.6785 16 6 1.5430 -6.8634 2.1161 17 7 2.3563 -8.0728 2.2651 18 6 2.1160 -9.1756 1.3429 19 6 2.6819 -10.4784 1.9044 20 6 4.1340 -10.2413 2.3367 21 6 4.1327 -9.2883 3.5347 22 1 3.7462 -9.8089 4.4109 23 6 5.5409 -8.8274 3.8092 24 8 6.4497 -9.2143 3.1132 25 8 5.7857 -7.9868 4.8266 26 6 3.2665 -8.0976 3.2394 27 8 3.4024 -7.1053 3.9235 28 6 2.2282 -3.6937 -0.0011 29 1 -0.4850 0.8400 -0.0004 30 1 -0.2689 -1.8415 -1.1660 31 1 1.0379 -2.2782 2.1706 32 1 -0.5154 -2.2350 1.2714 33 1 -0.4457 -4.5965 0.8035 34 1 0.2481 -4.5448 2.4531 35 1 1.4171 -6.3881 3.0890 36 1 0.5661 -7.1301 1.7128 37 1 1.0432 -9.2854 1.1845 38 1 2.5976 -8.9592 0.3892 39 1 2.6505 -11.2525 1.1378 40 1 2.0901 -10.7888 2.7655 41 1 4.6937 -9.7960 1.5142 42 1 4.5920 -11.1884 2.6217 43 1 6.7046 -7.7188 4.9633 44 1 3.2031 -3.3754 0.3683 45 1 2.3269 -4.0943 -1.0100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:32 Heat of formation + Delta-G solvation = -199.337513 kcal Electronic energy + Delta-G solvation = -30858.237984 eV Core-core repulsion = 26454.965613 eV Total energy + Delta-G solvation = -4403.272371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.38870 -40.02101 -39.09892 -37.24562 -36.86705 -36.11804 -34.35958 -34.27745 -32.16845 -30.58770 -29.98926 -28.67885 -27.58836 -25.83919 -24.91604 -22.82810 -22.38278 -21.90205 -19.93419 -19.24330 -18.52288 -18.41225 -17.44073 -17.35439 -17.03124 -16.74674 -16.57997 -15.42783 -15.25273 -15.07739 -14.95743 -14.78138 -14.35271 -14.11725 -13.84569 -13.72140 -13.54981 -13.41279 -12.99691 -12.48871 -12.25807 -12.03553 -11.97536 -11.84850 -11.69021 -11.57245 -11.48372 -11.40593 -11.36903 -11.35790 -10.91665 -10.81730 -10.63487 -10.49423 -10.14569 -9.91803 -9.76899 -9.42860 -8.78222 -8.65514 -8.24179 -8.04184 -6.31602 -4.38430 1.78795 2.32793 2.68066 2.90811 3.00982 3.19978 3.27124 3.31429 3.59509 4.04771 4.19010 4.26024 4.35456 4.46680 4.76512 4.85503 4.96298 4.99055 5.04735 5.10140 5.22733 5.34852 5.40954 5.48520 5.52563 5.58110 5.74651 5.85166 5.87611 5.97251 6.02166 6.21774 6.31699 6.42687 6.67785 6.87865 6.94260 7.16164 7.28319 7.31689 7.70826 7.71957 7.90727 7.98320 8.07744 8.57411 8.64301 9.29705 9.42585 10.76301 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.002778 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.880055 B =10075.019292 C =10862.353754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.587 6.587 11 C -0.136 4.136 12 C 0.093 3.907 13 N -0.606 5.606 14 C 0.508 3.492 15 O -0.547 6.547 16 C 0.095 3.905 17 N -0.579 5.579 18 C 0.107 3.893 19 C -0.131 4.131 20 C -0.111 4.111 21 C -0.093 4.093 22 H 0.140 0.860 23 C 0.500 3.500 24 O -0.509 6.509 25 O -0.493 6.493 26 C 0.526 3.474 27 O -0.521 6.521 28 C 0.124 3.876 29 H 0.269 0.731 30 H 0.386 0.614 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.410 0.590 44 H 0.070 0.930 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.254 -20.362 7.658 21.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.397 6.397 11 C -0.175 4.175 12 C -0.029 4.029 13 N -0.340 5.340 14 C 0.295 3.705 15 O -0.425 6.425 16 C -0.031 4.031 17 N -0.311 5.311 18 C -0.015 4.015 19 C -0.169 4.169 20 C -0.149 4.149 21 C -0.115 4.115 22 H 0.157 0.843 23 C 0.341 3.659 24 O -0.398 6.398 25 O -0.303 6.303 26 C 0.312 3.688 27 O -0.396 6.396 28 C 0.002 3.998 29 H 0.079 0.921 30 H 0.238 0.762 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.269 0.731 44 H 0.089 0.911 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.462 -20.730 7.411 22.020 hybrid contribution 0.608 1.661 0.193 1.779 sum 1.070 -19.069 7.605 20.558 Atomic orbital electron populations 1.69566 1.05951 1.27749 1.50590 1.24983 0.95048 0.99564 0.93416 0.86393 0.79855 0.82275 0.78362 1.20371 1.21003 1.19693 1.21557 0.93774 0.90255 1.51703 0.91725 1.19425 0.86150 0.90754 0.82891 1.86090 1.51445 1.53334 1.48861 1.23351 1.02846 0.90176 1.01145 1.22579 0.85055 0.98028 0.97285 1.48633 1.22541 1.16108 1.46707 1.20517 0.85805 0.81634 0.82592 1.90667 1.22151 1.75912 1.53808 1.21400 0.94076 0.85872 1.01782 1.46769 1.37102 1.15671 1.31604 1.21533 1.01572 0.85263 0.93167 1.21858 0.95445 0.97129 1.02478 1.21645 0.97705 0.99042 0.96500 1.21082 0.90437 0.96789 1.03223 0.84277 1.22465 0.90795 0.75275 0.77346 1.90736 1.46449 1.54942 1.47633 1.84629 1.36914 1.59562 1.49186 1.19215 0.80444 0.88565 0.80576 1.90825 1.66684 1.33780 1.48296 1.22075 0.97489 0.87552 0.92673 0.92088 0.76166 0.91318 0.89590 0.91697 0.92052 0.86582 0.87431 0.90002 0.90664 0.88684 0.90556 0.89342 0.89535 0.73140 0.91147 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.88 10.70 55.43 0.59 -22.28 16 2 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -14.06 8.21 -34.44 -0.28 -14.34 16 8 H 0.06 1.72 7.53 -52.48 -0.40 1.33 16 9 C 0.25 5.97 0.85 -89.93 -0.08 5.89 16 10 O -0.59 -14.62 13.09 -35.23 -0.46 -15.08 16 11 C -0.14 -2.90 5.69 -24.46 -0.14 -3.04 16 12 C 0.09 1.62 6.70 -2.41 -0.02 1.61 16 13 N -0.61 -11.95 3.32 -170.37 -0.57 -12.51 16 14 C 0.51 9.52 7.90 -10.98 -0.09 9.43 16 15 O -0.55 -12.15 16.75 5.55 0.09 -12.06 16 16 C 0.09 1.28 4.69 -5.19 -0.02 1.26 16 17 N -0.58 -7.21 2.31 -176.44 -0.41 -7.62 16 18 C 0.11 0.93 6.38 -4.58 -0.03 0.90 16 19 C -0.13 -0.78 6.01 -26.68 -0.16 -0.94 16 20 C -0.11 -0.92 4.79 -26.51 -0.13 -1.05 16 21 C -0.09 -0.97 2.86 -93.14 -0.27 -1.24 16 22 H 0.14 0.99 8.14 -51.93 -0.42 0.57 16 23 C 0.50 6.33 7.51 36.00 0.27 6.60 16 24 O -0.51 -7.50 16.55 -18.75 -0.31 -7.81 16 25 O -0.49 -5.77 12.39 -45.23 -0.56 -6.33 16 26 C 0.53 7.32 7.01 -11.87 -0.08 7.23 16 27 O -0.52 -9.25 14.86 -11.61 -0.17 -9.42 16 28 C 0.12 2.83 6.22 -3.06 -0.02 2.81 16 29 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.39 9.70 6.98 45.56 0.32 10.02 16 31 H 0.07 1.51 8.04 -51.93 -0.42 1.10 16 32 H 0.09 1.87 7.77 -51.93 -0.40 1.47 16 33 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.06 0.89 7.47 -51.93 -0.39 0.50 16 35 H 0.12 1.59 6.91 -51.92 -0.36 1.23 16 36 H 0.11 1.07 7.86 -51.93 -0.41 0.66 16 37 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 41 H 0.09 0.96 7.72 -51.93 -0.40 0.56 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.41 2.96 9.10 45.56 0.41 3.38 16 44 H 0.07 1.69 7.63 -51.93 -0.40 1.29 16 45 H 0.06 1.42 8.07 -51.93 -0.42 1.01 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -35.14 371.07 -7.29 -42.43 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -4.94 Total: 12.87 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: -1.13 Total: 16.90 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.38 Total: -42.42 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -1.41 Total: -50.70 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.14 -7.29 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.904 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds