Wall clock time and date at job start Sat Apr 11 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00251 * 2 1 4 4 H 1.48495 * 109.47091 * 89.99916 * 3 2 1 5 5 H 1.48494 * 109.47317 * 210.00089 * 3 2 1 6 6 H 1.48497 * 109.46878 * 330.00123 * 3 2 1 7 7 C 1.37884 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99578 * 179.97438 * 7 2 1 9 9 C 1.50691 * 119.99920 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.88543 * 56.12284 * 9 7 2 11 11 C 1.55157 * 111.00292 * 180.02562 * 9 7 2 12 12 C 1.54325 * 102.94227 * 153.57789 * 11 9 7 13 13 N 1.47016 * 107.27067 * 337.80893 * 12 11 9 14 14 C 1.34777 * 125.65082 * 178.96218 * 13 12 11 15 15 O 1.21347 * 120.00613 * 179.97438 * 14 13 12 16 16 C 1.49457 * 119.99907 * 359.97438 * 14 13 12 17 17 O 1.21344 * 119.99898 * 359.97438 * 16 14 13 18 18 N 1.34777 * 119.99907 * 180.02562 * 16 14 13 19 19 C 1.47422 * 125.65202 * 354.91225 * 18 16 14 20 20 C 1.54902 * 104.83267 * 204.09319 * 19 18 16 21 21 C 1.55161 * 101.58335 * 322.98920 * 20 19 18 22 22 C 1.47023 * 125.64340 * 174.60666 * 18 16 14 23 23 H 1.08997 * 109.88403 * 59.55712 * 22 18 16 24 24 C 1.53002 * 109.88344 * 298.39071 * 22 18 16 25 25 C 1.50702 * 109.47152 * 174.21733 * 24 22 18 26 26 O 1.20823 * 119.99875 * 354.23784 * 25 24 22 27 27 O 1.34231 * 119.99745 * 174.23938 * 25 24 22 28 28 C 1.47425 * 108.70516 * 358.93793 * 13 12 11 29 29 H 0.97000 * 119.99724 * 0.02562 * 1 2 3 30 30 H 0.96692 * 113.99791 * 300.69844 * 10 9 7 31 31 H 1.09004 * 110.71862 * 271.93719 * 11 9 7 32 32 H 1.08996 * 110.72308 * 35.03428 * 11 9 7 33 33 H 1.08999 * 109.88377 * 97.22617 * 12 11 9 34 34 H 1.09001 * 109.88140 * 218.23625 * 12 11 9 35 35 H 1.09003 * 110.36460 * 322.93580 * 19 18 16 36 36 H 1.09000 * 110.36391 * 85.25456 * 19 18 16 37 37 H 1.08998 * 111.00603 * 81.06261 * 20 19 18 38 38 H 1.09002 * 111.00421 * 204.87785 * 20 19 18 39 39 H 1.08998 * 110.71938 * 153.86689 * 21 20 19 40 40 H 1.08999 * 110.71802 * 277.14324 * 21 20 19 41 41 H 1.09006 * 109.47236 * 294.21778 * 24 22 18 42 42 H 1.08998 * 109.46769 * 54.21862 * 24 22 18 43 43 H 0.96702 * 116.99687 * 179.97438 * 27 25 24 44 44 H 1.08998 * 110.37026 * 265.29532 * 28 13 12 45 45 H 1.09007 * 110.36559 * 142.96763 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4402 -0.7000 6 1 1.4467 2.6526 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.3514 -2.5679 -1.1087 11 6 2.2274 -3.7050 -0.0005 12 6 1.3981 -4.8212 0.6687 13 7 0.3471 -4.1679 1.4624 14 6 -0.5994 -4.7999 2.1843 15 8 -1.4205 -4.1563 2.8042 16 6 -0.6378 -6.2935 2.2214 17 8 0.1829 -6.9371 1.6012 18 7 -1.5847 -6.9255 2.9429 19 6 -2.5727 -6.2742 3.8221 20 6 -2.9748 -7.3663 4.8442 21 6 -2.9717 -8.6395 3.9573 22 6 -1.8073 -8.3784 2.9785 23 1 -0.9080 -8.8826 3.3321 24 6 -2.1752 -8.8829 1.5817 25 6 -2.2621 -10.3873 1.5977 26 8 -1.9507 -10.9998 2.5915 27 8 -2.6854 -11.0467 0.5079 28 6 0.5003 -2.7069 1.3384 29 1 -0.4850 0.8401 -0.0004 30 1 -0.3091 -1.8620 -1.1234 31 1 2.4969 -3.9830 -1.0195 32 1 3.1189 -3.4795 0.5847 33 1 0.9464 -5.4554 -0.0940 34 1 2.0376 -5.4199 1.3174 35 1 -2.1227 -5.4232 4.3334 36 1 -3.4413 -5.9555 3.2458 37 1 -2.2372 -7.4447 5.6428 38 1 -3.9682 -7.1748 5.2502 39 1 -2.7809 -9.5281 4.5590 40 1 -3.9125 -8.7341 3.4152 41 1 -3.1384 -8.4664 1.2869 42 1 -1.4111 -8.5706 0.8698 43 1 -2.7240 -12.0112 0.5658 44 1 1.0889 -2.3153 2.1680 45 1 -0.4767 -2.2245 1.3044 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610620903.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:37 Heat of formation + Delta-G solvation = -196.309780 kcal Electronic energy + Delta-G solvation = -30813.476827 eV Core-core repulsion = 26410.335749 eV Total energy + Delta-G solvation = -4403.141079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03457 -40.27150 -38.95074 -37.49411 -37.23134 -36.37797 -34.32204 -32.27759 -32.19482 -31.69925 -30.25739 -27.98698 -27.12369 -26.09757 -24.52878 -22.86143 -22.02830 -21.81688 -20.33421 -19.66165 -18.87143 -18.29597 -17.43281 -17.27759 -16.85418 -16.48732 -16.22054 -15.87775 -15.43200 -15.20358 -14.92609 -14.46077 -14.14092 -14.03787 -13.61964 -13.36232 -13.17303 -13.05822 -12.99933 -12.86155 -12.79707 -12.33339 -12.10556 -11.83756 -11.66088 -11.54517 -11.50725 -11.23557 -11.08695 -11.01305 -10.97135 -10.83168 -10.72179 -10.56750 -10.50362 -10.21613 -9.44159 -9.11781 -8.90803 -8.71477 -8.43865 -7.91809 -6.33551 -4.42405 1.72030 1.91586 2.29446 2.87171 3.18173 3.26087 3.29112 3.52613 3.72280 4.20727 4.22998 4.26207 4.50028 4.63583 4.81072 4.94018 4.94688 5.02037 5.10841 5.32572 5.44602 5.47140 5.56432 5.66136 5.76994 5.78917 5.81056 5.84418 5.98281 6.03523 6.11930 6.19575 6.28670 6.47723 6.70653 6.75659 6.81090 7.13525 7.18485 7.27481 7.58271 7.70008 7.71889 7.96354 8.00302 8.41184 8.61231 9.27200 9.41597 10.74068 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021622 B = 0.002717 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.641981 B =10302.813952 C =11005.859996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.536 4.536 8 H 0.068 0.932 9 C 0.250 3.750 10 O -0.582 6.582 11 C -0.122 4.122 12 C 0.111 3.889 13 N -0.573 5.573 14 C 0.511 3.489 15 O -0.533 6.533 16 C 0.525 3.475 17 O -0.516 6.516 18 N -0.594 5.594 19 C 0.102 3.898 20 C -0.136 4.136 21 C -0.126 4.126 22 C 0.149 3.851 23 H 0.093 0.907 24 C -0.131 4.131 25 C 0.489 3.511 26 O -0.515 6.515 27 O -0.516 6.516 28 C 0.090 3.910 29 H 0.271 0.729 30 H 0.385 0.615 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.121 0.879 43 H 0.410 0.590 44 H 0.068 0.932 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.862 -16.844 5.989 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.196 1.196 6 H -0.210 1.210 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.209 3.791 10 O -0.392 6.392 11 C -0.160 4.160 12 C -0.011 4.011 13 N -0.304 5.304 14 C 0.293 3.707 15 O -0.412 6.412 16 C 0.309 3.691 17 O -0.391 6.391 18 N -0.330 5.330 19 C -0.020 4.020 20 C -0.174 4.174 21 C -0.164 4.164 22 C 0.046 3.954 23 H 0.111 0.889 24 C -0.169 4.169 25 C 0.331 3.669 26 O -0.403 6.403 27 O -0.328 6.328 28 C -0.030 4.030 29 H 0.081 0.919 30 H 0.237 0.763 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.139 0.861 43 H 0.269 0.731 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.514 -16.956 6.064 19.150 hybrid contribution 0.004 0.721 0.140 0.735 sum -6.510 -16.235 6.204 18.559 Atomic orbital electron populations 1.69563 1.06057 1.28047 1.49826 1.25087 0.95054 0.99843 0.93244 0.86364 0.79806 0.82239 0.78284 1.20406 1.19647 1.20972 1.21498 0.93760 0.89957 1.52209 0.91339 1.19607 0.85820 0.91916 0.81780 1.86095 1.48680 1.55874 1.48556 1.22717 0.97910 0.94812 1.00550 1.22140 0.89050 0.95537 0.94412 1.48624 1.27616 1.10067 1.44137 1.19412 0.82434 0.87273 0.81621 1.90693 1.39015 1.67202 1.44250 1.20225 0.80446 0.89184 0.79242 1.90726 1.37613 1.67818 1.42907 1.48321 1.32613 1.06785 1.45241 1.22600 0.91983 0.96225 0.91190 1.22884 1.02759 0.94130 0.97654 1.22747 0.97084 0.99213 0.97319 1.21377 1.00157 0.80807 0.93072 0.88935 1.21784 1.06370 0.87708 1.01082 1.23211 0.72310 0.91433 0.79927 1.90718 1.45613 1.69980 1.33991 1.84556 1.79363 1.27178 1.41671 1.23535 1.02973 0.75328 1.01211 0.91854 0.76296 0.90490 0.90402 0.91183 0.91737 0.88152 0.90718 0.90383 0.89447 0.89071 0.90639 0.87271 0.86150 0.73097 0.91389 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.22 10.73 55.43 0.60 -22.63 16 2 C 0.07 1.80 5.31 -17.82 -0.09 1.70 16 3 Si 0.91 19.94 29.54 -169.99 -5.02 14.91 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -13.64 8.25 -34.44 -0.28 -13.92 16 8 H 0.07 1.71 7.76 -52.48 -0.41 1.30 16 9 C 0.25 5.95 0.88 -89.63 -0.08 5.87 16 10 O -0.58 -14.76 13.16 -35.23 -0.46 -15.22 16 11 C -0.12 -2.46 6.13 -24.90 -0.15 -2.61 16 12 C 0.11 2.12 5.49 -3.07 -0.02 2.10 16 13 N -0.57 -11.88 3.33 -171.03 -0.57 -12.45 16 14 C 0.51 10.00 7.88 -11.58 -0.09 9.91 16 15 O -0.53 -11.04 14.17 5.50 0.08 -10.96 16 16 C 0.52 8.83 7.59 -11.58 -0.09 8.74 16 17 O -0.52 -9.18 13.31 5.50 0.07 -9.11 16 18 N -0.59 -7.99 3.06 -163.51 -0.50 -8.49 16 19 C 0.10 1.18 5.88 -2.53 -0.01 1.17 16 20 C -0.14 -1.13 7.09 -24.58 -0.17 -1.30 16 21 C -0.13 -1.07 5.60 -24.89 -0.14 -1.21 16 22 C 0.15 1.66 2.49 -66.94 -0.17 1.50 16 23 H 0.09 1.15 7.82 -51.93 -0.41 0.74 16 24 C -0.13 -1.35 5.30 -27.88 -0.15 -1.50 16 25 C 0.49 4.86 8.06 36.01 0.29 5.15 16 26 O -0.51 -6.17 15.83 -18.75 -0.30 -6.47 16 27 O -0.52 -4.03 13.42 -39.26 -0.53 -4.55 16 28 C 0.09 2.10 5.62 -2.53 -0.01 2.08 16 29 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 30 H 0.39 10.03 7.00 45.56 0.32 10.35 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.08 1.46 8.01 -51.93 -0.42 1.04 16 33 H 0.07 1.34 7.58 -51.93 -0.39 0.95 16 34 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 35 H 0.10 1.34 6.48 -51.93 -0.34 1.01 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.77 7.88 -51.93 -0.41 0.36 16 40 H 0.07 0.56 7.75 -51.93 -0.40 0.16 16 41 H 0.11 0.96 8.00 -51.93 -0.42 0.55 16 42 H 0.12 1.45 6.87 -51.93 -0.36 1.09 16 43 H 0.41 1.39 9.10 45.56 0.41 1.80 16 44 H 0.07 1.59 8.03 -51.93 -0.42 1.18 16 45 H 0.09 2.22 7.64 -51.92 -0.40 1.82 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -30.39 367.94 -7.11 -37.50 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -4.85 Total: 14.24 kcal Atomic # 6 Polarization: 18.86 SS G_CDS: -1.17 Total: 17.68 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: -0.47 Total: -43.57 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -1.14 Total: -46.31 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.39 -7.11 -37.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610620903.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.812 kcal (2) G-P(sol) polarization free energy of solvation -30.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds