Wall clock time and date at job start Sat Apr 11 2020 05:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00094 * 2 1 4 4 H 1.48507 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47164 * 299.99837 * 3 2 1 6 6 H 1.48498 * 109.47560 * 59.99887 * 3 2 1 7 7 C 1.38799 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00037 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99985 * 0.02562 * 7 2 1 10 10 C 1.81009 * 99.99997 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46965 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46626 * 179.97438 * 12 11 10 14 14 C 1.46845 * 111.00362 * 66.04809 * 13 12 11 15 15 C 1.53031 * 109.52355 * 174.15705 * 14 13 12 16 16 C 1.53120 * 109.27889 * 59.17893 * 15 14 13 17 17 C 1.53119 * 109.16026 * 302.34545 * 16 15 14 18 18 H 1.08999 * 109.49926 * 297.66918 * 17 16 15 19 19 N 1.46504 * 109.50265 * 177.59577 * 17 16 15 20 20 C 1.34774 * 126.58492 * 324.99829 * 19 17 16 21 21 C 1.36676 * 106.83539 * 180.02562 * 20 19 17 22 22 C 1.47381 * 125.77979 * 179.97438 * 21 20 19 23 23 O 1.21515 * 120.00558 * 0.02562 * 22 21 20 24 24 O 1.34758 * 119.99806 * 179.97438 * 22 21 20 25 25 N 1.34433 * 108.43412 * 0.02562 * 21 20 19 26 26 N 1.28757 * 109.51723 * 359.70657 * 25 21 20 27 27 C 1.46844 * 110.99957 * 301.83181 * 13 12 11 28 28 H 0.97009 * 119.99706 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46885 * 59.99452 * 10 9 7 30 30 H 1.09000 * 109.46781 * 299.99831 * 10 9 7 31 31 H 1.08993 * 109.47839 * 59.99947 * 11 10 9 32 32 H 1.09000 * 109.47160 * 299.99509 * 11 10 9 33 33 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 34 34 H 1.09001 * 109.46801 * 59.99811 * 12 11 10 35 35 H 1.09003 * 109.45885 * 294.17628 * 14 13 12 36 36 H 1.08996 * 109.45979 * 54.13820 * 14 13 12 37 37 H 1.09000 * 109.50402 * 179.11205 * 15 14 13 38 38 H 1.08998 * 109.50857 * 299.20029 * 15 14 13 39 39 H 1.09007 * 109.52351 * 62.24966 * 16 15 14 40 40 H 1.09000 * 109.52425 * 182.37312 * 16 15 14 41 41 H 1.08003 * 126.58711 * 359.97438 * 20 19 17 42 42 H 0.96705 * 116.99750 * 180.02562 * 24 22 21 43 43 H 1.09005 * 109.46829 * 305.85617 * 27 13 12 44 44 H 1.09000 * 109.46270 * 65.82786 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9791 -5.3243 -0.0001 12 6 3.1512 -6.3078 -0.0008 13 7 2.6359 -7.6835 -0.0008 14 6 1.9296 -7.9810 -1.2533 15 6 1.5351 -9.4593 -1.2793 16 6 0.6343 -9.7634 -0.0790 17 6 1.3755 -9.3995 1.2105 18 1 2.2696 -10.0161 1.3026 19 7 0.4993 -9.6336 2.3610 20 6 -0.8357 -9.4536 2.4037 21 6 -1.2404 -9.7902 3.6651 22 6 -2.6257 -9.7460 4.1662 23 8 -3.5257 -9.3860 3.4334 24 8 -2.8943 -10.1058 5.4367 25 7 -0.1606 -10.1674 4.3714 26 7 0.8878 -10.0924 3.6276 27 6 1.7747 -7.9228 1.1643 28 1 -0.4850 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8904 30 1 3.1243 -3.7314 -0.8895 31 1 1.3707 -5.4841 -0.8902 32 1 1.3703 -5.4846 0.8897 33 1 3.7596 -6.1473 -0.8908 34 1 3.7599 -6.1481 0.8892 35 1 1.0331 -7.3645 -1.3199 36 1 2.5826 -7.7643 -2.0987 37 1 0.9970 -9.6762 -2.2021 38 1 2.4321 -10.0764 -1.2274 39 1 -0.2805 -9.1751 -0.1518 40 1 0.3852 -10.8245 -0.0701 41 1 -1.4650 -9.1087 1.5965 42 1 -3.8179 -10.0607 5.7198 43 1 2.3152 -7.6642 2.0749 44 1 0.8789 -7.3067 1.0864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610623398.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:47 Heat of formation + Delta-G solvation = -2.023511 kcal Electronic energy + Delta-G solvation = -26602.702934 eV Core-core repulsion = 22683.032362 eV Total energy + Delta-G solvation = -3919.670572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.68690 -40.18487 -39.67227 -36.38572 -36.01504 -33.79915 -32.49011 -31.68390 -31.47127 -30.25110 -26.56808 -25.61477 -25.35950 -24.35948 -23.55250 -22.38882 -21.62094 -21.26910 -19.65061 -18.65331 -17.94062 -17.53132 -16.73856 -16.59555 -15.85020 -15.78090 -15.21674 -15.13118 -14.92889 -14.85629 -14.59917 -14.49375 -14.00395 -13.77390 -13.67241 -13.23713 -12.92847 -12.56136 -12.28638 -12.17003 -11.92785 -11.86387 -11.82095 -11.64512 -11.39366 -11.23653 -11.15771 -11.11761 -11.06272 -10.87158 -10.74051 -10.57729 -10.43124 -9.77964 -9.73755 -9.12017 -8.56928 -8.33008 -6.60725 -6.28458 -3.99661 0.67930 1.20427 1.52912 2.63035 2.70622 3.17204 3.17992 3.26327 3.48396 3.60465 3.80691 3.88367 4.14291 4.16895 4.34141 4.36007 4.59444 4.66057 4.73443 4.78327 4.98755 5.00770 5.06203 5.08379 5.16934 5.27692 5.30647 5.40175 5.44552 5.47049 5.49896 5.52322 5.62939 5.73586 5.80969 5.91729 5.98726 6.10346 6.17981 6.35608 6.57937 6.71195 6.76637 7.44176 7.55515 7.69701 8.31360 9.18180 10.79787 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010811 B = 0.002442 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.364271 B =11462.433938 C =13213.188090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.073 0.927 9 S -0.137 6.137 10 C -0.109 4.109 11 C -0.135 4.135 12 C 0.059 3.941 13 N -0.529 5.529 14 C 0.041 3.959 15 C -0.110 4.110 16 C -0.135 4.135 17 C 0.152 3.848 18 H 0.126 0.874 19 N -0.348 5.348 20 C 0.110 3.890 21 C -0.096 4.096 22 C 0.578 3.422 23 O -0.511 6.511 24 O -0.498 6.498 25 N -0.183 5.183 26 N -0.055 5.055 27 C 0.041 3.959 28 H 0.267 0.733 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.207 0.793 42 H 0.417 0.583 43 H 0.089 0.911 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.018 -23.762 0.783 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.664 4.664 8 H 0.091 0.909 9 S 0.091 5.909 10 C -0.259 4.259 11 C -0.175 4.175 12 C -0.070 4.070 13 N -0.253 5.253 14 C -0.087 4.087 15 C -0.148 4.148 16 C -0.174 4.174 17 C 0.051 3.949 18 H 0.143 0.857 19 N -0.131 5.131 20 C -0.048 4.048 21 C -0.233 4.233 22 C 0.419 3.581 23 O -0.399 6.399 24 O -0.308 6.308 25 N -0.058 5.058 26 N -0.036 5.036 27 C -0.088 4.088 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.224 0.776 42 H 0.276 0.724 43 H 0.107 0.893 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.475 -24.526 1.340 24.567 hybrid contribution -0.245 2.358 -0.529 2.429 sum 0.230 -22.168 0.811 22.184 Atomic orbital electron populations 1.70033 1.05939 1.27285 1.47234 1.25029 0.95099 0.99165 0.94546 0.86104 0.79650 0.81792 0.77937 1.19575 1.20527 1.20527 1.22707 0.94502 0.90631 1.58523 0.90873 1.84631 1.09673 0.99751 1.96879 1.23166 1.02862 0.96912 1.02934 1.21951 0.98523 0.94507 1.02546 1.22317 0.96870 0.84298 1.03470 1.62154 1.36354 1.25413 1.01340 1.22268 0.98220 0.95638 0.92539 1.21537 0.99672 0.96716 0.96878 1.22087 0.99481 1.02860 0.92945 1.21782 0.93096 0.99257 0.80778 0.85656 1.50750 1.06058 1.43646 1.12619 1.23306 0.85907 0.96585 0.99045 1.20128 0.92786 1.17606 0.92740 1.19065 0.86449 0.72834 0.79703 1.90961 1.46317 1.44810 1.57774 1.84635 1.36809 1.80056 1.29293 1.74790 0.96152 1.10393 1.24461 1.82123 1.17001 1.18427 0.86005 1.22444 0.97742 0.92641 0.96019 0.92316 0.92076 0.92029 0.91438 0.91647 0.89993 0.90284 0.93498 0.89682 0.90032 0.90355 0.90521 0.90212 0.77646 0.72448 0.89284 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 2 C 0.07 1.99 5.49 -17.43 -0.10 1.89 16 3 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.59 9.50 30.94 0.29 -14.30 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.14 -3.51 21.44 -107.50 -2.30 -5.82 16 10 C -0.11 -2.08 5.67 37.16 0.21 -1.87 16 11 C -0.14 -1.96 4.52 -26.73 -0.12 -2.08 16 12 C 0.06 0.66 5.36 -3.82 -0.02 0.64 16 13 N -0.53 -4.89 4.86 -234.67 -1.14 -6.03 16 14 C 0.04 0.32 5.05 -3.84 -0.02 0.30 16 15 C -0.11 -0.61 6.09 -26.65 -0.16 -0.77 16 16 C -0.13 -0.76 4.99 -26.61 -0.13 -0.89 16 17 C 0.15 1.14 3.39 -67.85 -0.23 0.91 16 18 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 19 N -0.35 -3.27 3.54 -54.47 -0.19 -3.46 16 20 C 0.11 1.00 10.40 -16.82 -0.17 0.83 16 21 C -0.10 -1.08 7.02 -83.57 -0.59 -1.66 16 22 C 0.58 6.25 8.33 34.45 0.29 6.53 16 23 O -0.51 -6.39 17.65 -19.28 -0.34 -6.73 16 24 O -0.50 -4.27 13.44 -40.65 -0.55 -4.81 16 25 N -0.18 -2.36 12.39 32.83 0.41 -1.95 16 26 N -0.06 -0.67 13.78 60.35 0.83 0.16 16 27 C 0.04 0.38 4.44 -3.84 -0.02 0.36 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.06 1.17 8.14 -51.92 -0.42 0.74 16 30 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 31 H 0.07 0.98 6.68 -51.93 -0.35 0.64 16 32 H 0.06 0.99 6.50 -51.93 -0.34 0.65 16 33 H 0.08 0.87 8.06 -51.93 -0.42 0.46 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.42 6.76 -51.93 -0.35 0.07 16 36 H 0.08 0.65 8.06 -51.93 -0.42 0.23 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.41 7.12 -51.93 -0.37 0.04 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.21 1.33 7.29 -52.48 -0.38 0.94 16 42 H 0.42 1.40 9.11 45.56 0.42 1.81 16 43 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 44 H 0.05 0.55 6.61 -51.93 -0.34 0.21 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -34.84 378.87 -8.11 -42.96 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -5.48 Total: -1.20 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -0.77 Total: -10.09 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.64 Total: -36.34 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.89 Total: -11.55 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.84 -8.11 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623398.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.932 kcal (2) G-P(sol) polarization free energy of solvation -34.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds