Wall clock time and date at job start Sat Apr 11 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86790 * 120.00344 * 2 1 4 4 H 1.48499 * 109.47312 * 270.00236 * 3 2 1 5 5 H 1.48504 * 109.47106 * 30.00152 * 3 2 1 6 6 H 1.48503 * 109.47573 * 150.00181 * 3 2 1 7 7 C 1.37879 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99912 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00305 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99720 * 193.95501 * 10 9 7 12 12 C 1.50704 * 109.47259 * 66.04641 * 11 10 9 13 13 N 1.31265 * 126.19734 * 269.68592 * 12 11 10 14 14 N 1.28798 * 110.03420 * 179.81859 * 13 12 11 15 15 C 1.31392 * 109.26424 * 0.45547 * 14 13 12 16 16 C 1.46894 * 134.26940 * 179.78125 * 15 14 13 17 17 O 1.21745 * 120.78189 * 0.02562 * 16 15 14 18 18 N 1.35152 * 118.43202 * 180.02562 * 16 15 14 19 19 H 0.96996 * 119.85360 * 179.97438 * 18 16 15 20 20 C 1.38152 * 120.28480 * 359.93380 * 18 16 15 21 21 C 1.32809 * 121.84928 * 0.02562 * 20 18 16 22 22 N 1.34469 * 126.20284 * 90.00287 * 12 11 10 23 23 C 1.46898 * 111.00465 * 70.00178 * 10 9 7 24 24 C 1.50707 * 109.46592 * 293.95579 * 23 10 9 25 25 C 1.38227 * 119.62024 * 94.97729 * 24 23 10 26 26 C 1.38627 * 119.15702 * 179.78495 * 25 24 23 27 27 C 1.38669 * 118.42389 * 0.47826 * 26 25 24 28 28 C 1.38186 * 119.16143 * 359.49762 * 27 26 25 29 29 N 1.31856 * 119.61172 * 274.99481 * 24 23 10 30 30 H 0.97004 * 119.99712 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47171 * 59.99704 * 9 7 2 32 32 H 1.08997 * 109.46773 * 300.00148 * 9 7 2 33 33 H 1.09005 * 109.47080 * 186.04552 * 11 10 9 34 34 H 1.08999 * 109.47458 * 306.04195 * 11 10 9 35 35 H 1.08006 * 119.07343 * 180.02562 * 20 18 16 36 36 H 1.07995 * 119.45825 * 180.02562 * 21 20 18 37 37 H 1.08993 * 109.47549 * 173.95144 * 23 10 9 38 38 H 1.08997 * 109.47171 * 53.94721 * 23 10 9 39 39 H 1.07998 * 120.41916 * 359.97438 * 25 24 23 40 40 H 1.08008 * 120.78688 * 180.22921 * 26 25 24 41 41 H 1.08002 * 120.42244 * 179.78279 * 27 26 25 42 42 H 1.07996 * 119.61757 * 180.25243 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5792 -0.0022 11 6 5.4315 -2.6321 0.3279 12 6 5.6356 -2.1808 1.7512 13 7 5.8602 -0.9504 2.1497 14 7 5.9835 -0.9173 3.4314 15 6 5.8521 -2.1335 3.9111 16 6 5.8970 -2.7142 5.2596 17 8 6.0928 -2.0115 6.2344 18 7 5.7159 -4.0469 5.3927 19 1 5.7418 -4.4521 6.2736 20 6 5.4932 -4.8343 4.2796 21 6 5.4495 -4.3210 3.0555 22 7 5.6266 -2.9664 2.8426 23 6 3.7339 -3.2311 -1.2912 24 6 2.2460 -3.3765 -1.4816 25 6 1.5514 -2.4172 -2.1942 26 6 0.1837 -2.5629 -2.3673 27 6 -0.4387 -3.6677 -1.8061 28 6 0.3214 -4.5858 -1.1069 29 7 1.6219 -4.4173 -0.9661 30 1 -0.4850 0.8401 0.0004 31 1 3.8752 -0.6805 0.8888 32 1 3.8744 -0.6802 -0.8911 33 1 5.7928 -3.6544 0.2155 34 1 5.9841 -1.9756 -0.3442 35 1 5.3505 -5.8971 4.4086 36 1 5.2724 -4.9724 2.2125 37 1 4.1999 -4.2163 -1.3037 38 1 4.1456 -2.6242 -2.0976 39 1 2.0681 -1.5666 -2.6135 40 1 -0.3843 -1.8311 -2.9226 41 1 -1.5032 -3.8113 -1.9181 42 1 -0.1550 -5.4511 -0.6703 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641908240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:50 Heat of formation + Delta-G solvation = 142.419221 kcal Electronic energy + Delta-G solvation = -29712.768826 eV Core-core repulsion = 25696.210561 eV Total energy + Delta-G solvation = -4016.558265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.56904 -40.18736 -39.52183 -37.51928 -36.95391 -34.43711 -32.73456 -32.05887 -31.33390 -30.39132 -30.14599 -28.40294 -26.87444 -24.97084 -24.28082 -23.81524 -22.55650 -21.85570 -21.01652 -20.14948 -19.03900 -18.75596 -17.90421 -17.19197 -16.74845 -16.08373 -15.81062 -15.49348 -15.26212 -15.05445 -14.55915 -14.45830 -14.38472 -14.16053 -13.49687 -13.46937 -12.92636 -12.77080 -12.65904 -12.44845 -12.30046 -11.99265 -11.89595 -11.61321 -11.38713 -11.25251 -10.84470 -10.82763 -10.62818 -10.51018 -10.35883 -9.84658 -9.47213 -9.29233 -8.90026 -8.60262 -8.55543 -8.39767 -7.73916 -7.73124 -6.08522 -4.00601 0.82821 1.23063 2.02494 2.24245 2.32473 2.33957 2.69685 3.19221 3.28142 3.39240 3.51088 3.77317 4.08423 4.38940 4.42404 4.56976 4.62377 4.78007 4.99014 5.08333 5.21758 5.24630 5.33912 5.49942 5.61551 5.67099 5.79186 5.82845 5.89272 5.91804 6.03006 6.17424 6.23976 6.36207 6.49944 6.60717 6.72482 6.74773 6.86853 7.05495 7.19206 7.46667 7.47492 7.62833 7.64660 7.77034 8.53464 8.56002 8.90157 8.99857 9.50718 11.00193 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.004334 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.516663 B = 6459.443277 C = 7664.015918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.075 3.925 3 Si 0.855 3.145 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.257 1.257 7 C -0.504 4.504 8 H 0.097 0.903 9 C 0.149 3.851 10 N -0.518 5.518 11 C 0.132 3.868 12 C 0.235 3.765 13 N -0.269 5.269 14 N -0.205 5.205 15 C 0.093 3.907 16 C 0.602 3.398 17 O -0.489 6.489 18 N -0.639 5.639 19 H 0.427 0.573 20 C 0.075 3.925 21 C -0.005 4.005 22 N -0.381 5.381 23 C 0.122 3.878 24 C 0.148 3.852 25 C -0.077 4.077 26 C -0.077 4.077 27 C -0.165 4.165 28 C 0.065 3.935 29 N -0.480 5.480 30 H 0.262 0.738 31 H 0.043 0.957 32 H -0.009 1.009 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.187 0.813 36 H 0.185 0.815 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.161 -15.015 0.076 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.128 4.128 3 Si 0.682 3.318 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.541 4.541 8 H 0.114 0.886 9 C 0.023 3.977 10 N -0.243 5.243 11 C 0.001 3.999 12 C -0.031 4.031 13 N -0.112 5.112 14 N -0.052 5.052 15 C -0.169 4.169 16 C 0.388 3.612 17 O -0.359 6.359 18 N -0.284 5.284 19 H 0.266 0.734 20 C -0.046 4.046 21 C -0.124 4.124 22 N -0.067 5.067 23 C -0.006 4.006 24 C 0.008 3.992 25 C -0.098 4.098 26 C -0.103 4.103 27 C -0.185 4.185 28 C -0.090 4.090 29 N -0.190 5.190 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.009 0.991 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.204 0.796 36 H 0.202 0.798 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.559 -13.730 1.285 16.779 hybrid contribution -0.338 0.790 -0.467 0.978 sum 9.221 -12.940 0.818 15.911 Atomic orbital electron populations 1.69887 1.05923 1.26689 1.49596 1.24794 0.94655 0.98341 0.94996 0.87125 0.81532 0.84525 0.78601 1.20364 1.21272 1.18060 1.21368 0.88502 0.95257 1.48993 0.88560 1.20489 0.97598 0.83058 0.96547 1.62038 1.10231 1.21498 1.30581 1.20476 0.92837 1.01213 0.85334 1.24761 1.00154 0.86714 0.91430 1.74878 1.18166 1.15371 1.02832 1.74596 1.13174 1.15208 1.02197 1.24447 1.13373 0.89479 0.89629 1.16472 0.77371 0.81528 0.85832 1.90969 1.46866 1.59437 1.38653 1.43325 1.67116 1.06944 1.10973 0.73368 1.21323 1.00935 0.97820 0.84486 1.21050 1.10300 0.82161 0.98912 1.43484 1.47598 1.08086 1.07572 1.20698 0.91651 0.98446 0.89832 1.20353 0.95165 0.90622 0.93094 1.21495 0.94844 0.96550 0.96910 1.21097 0.94428 0.96090 0.98724 1.21792 1.00015 0.96403 1.00321 1.22191 0.89863 0.98861 0.98123 1.67222 1.10570 1.23025 1.18223 0.92772 0.93855 0.99147 0.88940 0.91037 0.79573 0.79822 0.90476 0.93790 0.86282 0.86499 0.86664 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 13.96 55.43 0.77 -24.54 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.86 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 7 C -0.50 -13.15 6.32 -34.44 -0.22 -13.37 16 8 H 0.10 2.71 5.17 -52.48 -0.27 2.44 16 9 C 0.15 3.41 3.62 -4.98 -0.02 3.39 16 10 N -0.52 -9.58 4.55 -238.96 -1.09 -10.67 16 11 C 0.13 1.94 5.49 -4.97 -0.03 1.91 16 12 C 0.23 4.05 6.76 -155.29 -1.05 3.00 16 13 N -0.27 -5.57 11.18 32.73 0.37 -5.20 16 14 N -0.21 -4.31 12.28 32.34 0.40 -3.91 16 15 C 0.09 1.63 8.12 -154.30 -1.25 0.38 16 16 C 0.60 8.94 7.97 -12.59 -0.10 8.83 16 17 O -0.49 -8.68 17.99 5.15 0.09 -8.59 16 18 N -0.64 -5.70 5.38 -13.15 -0.07 -5.77 16 19 H 0.43 2.37 8.92 -40.82 -0.36 2.00 16 20 C 0.08 0.51 11.09 -16.57 -0.18 0.32 16 21 C -0.01 -0.05 10.87 -16.51 -0.18 -0.23 16 22 N -0.38 -5.76 2.97 -58.39 -0.17 -5.93 16 23 C 0.12 2.00 5.28 -4.97 -0.03 1.97 16 24 C 0.15 2.84 4.01 -82.58 -0.33 2.51 16 25 C -0.08 -1.54 6.30 -39.44 -0.25 -1.79 16 26 C -0.08 -1.51 10.11 -39.28 -0.40 -1.91 16 27 C -0.17 -3.00 10.11 -39.44 -0.40 -3.40 16 28 C 0.07 1.18 11.18 -17.55 -0.20 0.98 16 29 N -0.48 -9.33 10.16 -9.47 -0.10 -9.43 16 30 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.04 1.10 5.21 -51.93 -0.27 0.83 16 32 H -0.01 -0.21 7.41 -51.93 -0.38 -0.59 16 33 H 0.09 0.98 7.93 -51.93 -0.41 0.56 16 34 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 35 H 0.19 0.28 8.06 -52.48 -0.42 -0.14 16 36 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 38 H 0.04 0.66 7.91 -51.93 -0.41 0.25 16 39 H 0.12 2.36 7.98 -52.49 -0.42 1.94 16 40 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 354.60 15.07 5.34 5.34 Total: -1.00 -37.33 354.60 -8.50 -45.83 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.65 Total: 1.52 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -4.73 Total: 4.57 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: 0.11 Total: -65.46 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -37.33 -8.50 -45.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641908240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.251 kcal (2) G-P(sol) polarization free energy of solvation -37.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds