Wall clock time and date at job start Sat Apr 11 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86794 * 120.00074 * 2 1 4 4 H 1.48503 * 109.47006 * 270.00152 * 3 2 1 5 5 H 1.48502 * 109.47266 * 29.99630 * 3 2 1 6 6 H 1.48498 * 109.47132 * 150.00046 * 3 2 1 7 7 C 1.38662 * 119.99755 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99534 * 180.02562 * 7 2 1 9 9 O 1.34823 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99567 * 185.05655 * 9 7 2 11 11 C 1.38900 * 120.06762 * 354.44006 * 10 9 7 12 12 C 1.38077 * 119.92611 * 180.02562 * 11 10 9 13 13 C 1.38326 * 120.07352 * 359.74801 * 12 11 10 14 14 C 1.38280 * 120.13401 * 0.50874 * 13 12 11 15 15 C 1.50700 * 119.96593 * 179.76638 * 14 13 12 16 16 N 1.46498 * 109.47233 * 269.72765 * 15 14 13 17 17 C 1.34775 * 119.99961 * 179.97438 * 16 15 14 18 18 O 1.21587 * 119.99831 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99862 * 179.97438 * 17 16 15 20 20 C 1.46500 * 119.99967 * 179.97438 * 19 17 16 21 21 C 1.52994 * 109.47302 * 180.02562 * 20 19 17 22 22 C 1.53002 * 109.47383 * 180.02562 * 21 20 19 23 23 H 1.09006 * 115.55705 * 330.68798 * 22 21 20 24 24 C 1.52996 * 117.50094 * 185.00031 * 22 21 20 25 25 C 1.53005 * 60.00195 * 252.50981 * 24 22 21 26 26 F 1.39892 * 117.50106 * 107.48512 * 25 24 22 27 27 F 1.39903 * 117.49832 * 252.51499 * 25 24 22 28 28 C 1.38127 * 120.06973 * 359.48978 * 14 13 12 29 29 H 0.96997 * 120.00070 * 0.02562 * 1 2 3 30 30 H 1.07996 * 120.03403 * 0.04897 * 11 10 9 31 31 H 1.08005 * 119.96488 * 179.97438 * 12 11 10 32 32 H 1.07997 * 119.93275 * 180.25289 * 13 12 11 33 33 H 1.08998 * 109.47248 * 149.71907 * 15 14 13 34 34 H 1.09004 * 109.46582 * 29.72691 * 15 14 13 35 35 H 0.96994 * 119.99747 * 359.97438 * 16 15 14 36 36 H 0.96994 * 119.99846 * 0.02562 * 19 17 16 37 37 H 1.09001 * 109.47151 * 60.00048 * 20 19 17 38 38 H 1.09003 * 109.47125 * 300.00689 * 20 19 17 39 39 H 1.08998 * 109.47332 * 60.00243 * 21 20 19 40 40 H 1.09001 * 109.46698 * 300.00213 * 21 20 19 41 41 H 1.08998 * 117.49584 * 359.97438 * 24 22 21 42 42 H 1.08996 * 117.49893 * 145.01759 * 24 22 21 43 43 H 1.08000 * 120.03258 * 180.27721 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4401 0.7000 7 6 2.0089 -1.2009 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0699 -3.5046 0.1077 11 6 3.4573 -3.4395 0.0947 12 6 4.2023 -4.5970 0.2034 13 6 3.5685 -5.8199 0.3303 14 6 2.1874 -5.8885 0.3382 15 6 1.5008 -7.2234 0.4713 16 7 1.2713 -7.7895 -0.8602 17 6 0.6668 -8.9873 -0.9882 18 8 0.3115 -9.5977 0.0015 19 7 0.4553 -9.5078 -2.2132 20 6 -0.2013 -10.8101 -2.3524 21 6 -0.3175 -11.1668 -3.8356 22 6 -1.0038 -12.5265 -3.9809 23 1 -0.8530 -13.2202 -3.1537 24 6 -1.1098 -13.1176 -5.3881 25 6 -2.3562 -12.5625 -4.6956 26 9 -2.8705 -11.3496 -5.1661 27 9 -3.3046 -13.4833 -4.2374 28 6 1.4365 -4.7342 0.2299 29 1 -0.4850 0.8400 -0.0004 30 1 3.9528 -2.4846 0.0001 31 1 5.2811 -4.5471 0.1929 32 1 4.1534 -6.7234 0.4192 33 1 0.5457 -7.0916 0.9797 34 1 2.1301 -7.8994 1.0501 35 1 1.5545 -7.3023 -1.6497 36 1 0.7384 -9.0206 -3.0027 37 1 -1.1966 -10.7642 -1.9103 38 1 0.3886 -11.5709 -1.8411 39 1 0.6779 -11.2128 -4.2773 40 1 -0.9072 -10.4060 -4.3471 41 1 -0.6910 -12.5375 -6.2104 42 1 -1.0288 -14.2000 -5.4868 43 1 0.3579 -4.7880 0.2406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649910321.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:02 Heat of formation + Delta-G solvation = -106.500302 kcal Electronic energy + Delta-G solvation = -27355.358681 eV Core-core repulsion = 22845.024518 eV Total energy + Delta-G solvation = -4510.334163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.08181 -47.76282 -40.04194 -39.09602 -37.74210 -36.84634 -35.05300 -34.40156 -32.35072 -31.24658 -30.04559 -29.07719 -26.01672 -25.16193 -23.70717 -23.07781 -21.72818 -21.55483 -20.90162 -20.75482 -18.67655 -18.15732 -17.60527 -17.26524 -17.04394 -16.45167 -16.22506 -15.81390 -15.18501 -14.89241 -14.67397 -14.52970 -14.44286 -14.39974 -14.26824 -14.01712 -13.96997 -13.71720 -13.58889 -13.48484 -12.77837 -12.57556 -12.42161 -12.36503 -12.16158 -11.86135 -11.67244 -11.39324 -11.20890 -10.94688 -10.83436 -10.71463 -10.49012 -10.37396 -10.21635 -9.42463 -9.34666 -8.90697 -8.79620 -8.26688 -7.34457 -6.50333 -4.09931 1.84833 2.25042 2.53728 2.56264 2.76828 3.08973 3.10315 3.15061 3.23290 3.64310 3.79745 3.91416 4.13637 4.22066 4.44559 4.57599 4.70578 4.75160 4.90019 4.92817 5.00061 5.05828 5.20305 5.27149 5.33170 5.52990 5.57005 5.64209 5.76094 5.84016 5.92422 6.06247 6.24033 6.30346 6.53700 6.54750 6.80551 6.87478 6.99037 7.18079 7.25988 7.34411 7.69506 7.93618 8.00609 8.60092 8.94908 9.63567 10.67366 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.001685 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.715150 B =16617.405598 C =17688.654285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.077 4.077 13 C -0.194 4.194 14 C -0.073 4.073 15 C 0.187 3.813 16 N -0.736 5.736 17 C 0.704 3.296 18 O -0.595 6.595 19 N -0.751 5.751 20 C 0.142 3.858 21 C -0.110 4.110 22 C -0.142 4.142 23 H 0.136 0.864 24 C -0.171 4.171 25 C 0.192 3.808 26 F -0.158 7.158 27 F -0.161 7.161 28 C -0.170 4.170 29 H 0.271 0.729 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.399 0.601 36 H 0.397 0.603 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -23.020 -10.567 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.074 4.074 15 C 0.063 3.937 16 N -0.391 5.391 17 C 0.403 3.597 18 O -0.473 6.473 19 N -0.407 5.407 20 C 0.018 3.982 21 C -0.147 4.147 22 C -0.162 4.162 23 H 0.153 0.847 24 C -0.209 4.209 25 C 0.156 3.844 26 F -0.138 7.138 27 F -0.142 7.142 28 C -0.190 4.190 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.231 0.769 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.487 -23.351 -9.629 25.303 hybrid contribution 0.516 1.392 -0.784 1.678 sum 2.003 -21.960 -10.413 24.386 Atomic orbital electron populations 1.70036 1.05969 1.27779 1.45725 1.25305 0.95856 0.98876 0.96473 0.85705 0.78932 0.80034 0.78720 1.19869 1.20212 1.19174 1.21322 0.91789 0.80766 1.53087 0.89034 1.83984 1.34274 1.11410 1.78276 1.19333 0.90269 0.88085 0.92736 1.21242 0.93839 0.99089 1.10301 1.20748 0.98561 0.92273 0.97933 1.20484 0.93351 0.97119 1.10427 1.19279 0.93472 0.92855 1.01746 1.20002 0.99946 0.90948 0.82772 1.45251 1.64012 1.19773 1.10014 1.15924 0.78861 0.81368 0.83517 1.90921 1.57575 1.62000 1.36800 1.45035 1.66086 1.22536 1.07056 1.21092 0.98151 0.84165 0.94842 1.21414 1.01748 0.94394 0.97191 1.23599 0.94261 1.00480 0.97852 0.84656 1.24400 0.95698 1.03832 0.96976 1.20106 0.81411 0.78557 1.04352 1.93027 1.88691 1.43363 1.88719 1.93041 1.67159 1.64666 1.89286 1.20099 0.99471 0.89830 1.09613 0.91938 0.85475 0.87298 0.87492 0.91002 0.91101 0.76717 0.76947 0.91386 0.91294 0.89338 0.89751 0.85827 0.85779 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.84 13.67 55.48 0.76 -24.09 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.09 29.55 -169.99 -5.02 15.06 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 9 O -0.18 -4.88 9.76 0.05 0.00 -4.88 16 10 C 0.15 3.46 6.65 -39.11 -0.26 3.20 16 11 C -0.23 -4.64 9.17 -39.40 -0.36 -5.00 16 12 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 13 C -0.19 -3.11 9.70 -39.53 -0.38 -3.50 16 14 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 15 C 0.19 2.74 5.80 -5.19 -0.03 2.71 16 16 N -0.74 -9.50 5.55 -66.41 -0.37 -9.86 16 17 C 0.70 9.59 8.57 -86.92 -0.74 8.85 16 18 O -0.59 -10.49 16.34 5.29 0.09 -10.40 16 19 N -0.75 -7.10 5.56 -65.23 -0.36 -7.47 16 20 C 0.14 1.15 5.63 -4.04 -0.02 1.13 16 21 C -0.11 -0.56 5.59 -26.73 -0.15 -0.71 16 22 C -0.14 -0.69 5.72 -90.62 -0.52 -1.21 16 23 H 0.14 0.54 8.08 -51.93 -0.42 0.12 16 24 C -0.17 -0.64 10.22 -26.73 -0.27 -0.92 16 25 C 0.19 1.37 5.20 -26.73 -0.14 1.23 16 26 F -0.16 -1.43 16.47 2.25 0.04 -1.40 16 27 F -0.16 -1.44 17.60 2.25 0.04 -1.40 16 28 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 31 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 34 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 35 H 0.40 4.45 8.48 -40.82 -0.35 4.11 16 36 H 0.40 2.69 8.49 -40.82 -0.35 2.34 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.48 7.06 -51.93 -0.37 0.12 16 41 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.12 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -33.54 380.29 -8.52 -42.05 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.40 Total: 7.58 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -4.01 Total: -10.94 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.03 Total: -41.42 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.09 Total: -15.28 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.08 Total: -2.79 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.54 -8.52 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649910321.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.446 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds