Wall clock time and date at job start Sat Apr 11 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48500 * 109.47059 * 270.00393 * 3 2 1 5 5 H 1.48501 * 109.47082 * 30.00420 * 3 2 1 6 6 H 1.48497 * 109.46981 * 150.00053 * 3 2 1 7 7 C 1.38807 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00299 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99733 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99861 * 174.44730 * 9 7 2 11 11 C 1.52999 * 109.54245 * 302.39240 * 10 9 7 12 12 N 1.46502 * 109.46831 * 305.14567 * 11 10 9 13 13 C 1.34778 * 119.99897 * 185.04887 * 12 11 10 14 14 O 1.21594 * 119.99904 * 0.02562 * 13 12 11 15 15 C 1.47544 * 120.00002 * 179.97438 * 13 12 11 16 16 C 1.39905 * 120.18505 * 89.73097 * 15 13 12 17 17 F 1.35103 * 120.09658 * 359.97093 * 16 15 13 18 18 C 1.38223 * 119.80051 * 179.69909 * 16 15 13 19 19 C 1.38297 * 120.19271 * 0.59198 * 18 16 15 20 20 C 1.38307 * 120.38575 * 359.68148 * 19 18 16 21 21 C 1.38221 * 120.18551 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.09502 * 179.97438 * 21 20 19 23 23 C 1.53183 * 109.54450 * 62.56894 * 10 9 7 24 24 C 1.53099 * 109.15544 * 63.06348 * 23 10 9 25 25 O 1.42907 * 109.48688 * 57.47575 * 24 23 10 26 26 C 1.42897 * 114.09635 * 298.88326 * 25 24 23 27 27 C 1.53095 * 109.41433 * 61.16173 * 26 25 24 28 28 H 0.97001 * 120.00390 * 359.97438 * 1 2 3 29 29 H 0.96991 * 120.00417 * 354.43967 * 9 7 2 30 30 H 1.09001 * 109.47000 * 65.14191 * 11 10 9 31 31 H 1.08998 * 109.47487 * 185.14542 * 11 10 9 32 32 H 0.96995 * 120.00480 * 5.04342 * 12 11 10 33 33 H 1.08004 * 119.90190 * 180.30981 * 18 16 15 34 34 H 1.08002 * 119.81140 * 179.69657 * 19 18 16 35 35 H 1.07995 * 119.90551 * 180.02562 * 20 19 18 36 36 H 1.08996 * 109.51691 * 182.88381 * 23 10 9 37 37 H 1.09004 * 109.51853 * 303.07206 * 23 10 9 38 38 H 1.08995 * 109.41018 * 297.49327 * 24 23 10 39 39 H 1.08998 * 109.48901 * 177.50786 * 24 23 10 40 40 H 1.08994 * 109.48495 * 301.17889 * 26 25 24 41 41 H 1.09006 * 109.49169 * 181.14274 * 26 25 24 42 42 H 1.08995 * 109.52336 * 182.48241 * 27 26 25 43 43 H 1.08999 * 109.57829 * 62.32186 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0531 -3.6537 -0.1249 11 6 2.8730 -3.6489 -1.4167 12 7 1.9925 -3.3660 -2.5529 13 6 2.4779 -3.4120 -3.8094 14 8 3.6465 -3.6887 -3.9999 15 6 1.5911 -3.1276 -4.9537 16 6 1.4518 -1.8185 -5.4274 17 9 2.1290 -0.8091 -4.8378 18 6 0.6236 -1.5620 -6.5039 19 6 -0.0756 -2.5929 -7.1046 20 6 0.0518 -3.8891 -6.6392 21 6 0.8802 -4.1644 -5.5675 22 9 1.0029 -5.4311 -5.1140 23 6 2.9890 -3.8259 1.0754 24 6 2.1537 -3.9107 2.3557 25 8 1.2269 -4.9933 2.2494 26 6 0.2961 -4.8610 1.1732 27 6 1.0566 -4.8166 -0.1548 28 1 -0.4851 0.8400 0.0004 29 1 0.3591 -2.3901 0.0794 30 1 3.6442 -2.8811 -1.3546 31 1 3.3410 -4.6238 -1.5536 32 1 1.0602 -3.1456 -2.4009 33 1 0.5188 -0.5528 -6.8741 34 1 -0.7248 -2.3848 -7.9423 35 1 -0.4976 -4.6883 -7.1144 36 1 3.5672 -4.7423 0.9578 37 1 3.6648 -2.9728 1.1357 38 1 1.6080 -2.9774 2.4946 39 1 2.8114 -4.0776 3.2087 40 1 -0.2738 -3.9401 1.2966 41 1 -0.3843 -5.7126 1.1741 42 1 0.3518 -4.6715 -0.9734 43 1 1.5946 -5.7535 -0.2991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671952335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:10 Heat of formation + Delta-G solvation = -131.838499 kcal Electronic energy + Delta-G solvation = -30974.870196 eV Core-core repulsion = 26463.437286 eV Total energy + Delta-G solvation = -4511.432910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.15366 -48.97142 -39.87702 -39.13933 -38.13155 -35.83910 -33.49170 -32.30446 -31.32488 -30.66765 -30.54381 -29.19959 -26.96898 -24.29450 -23.98419 -23.02297 -22.97850 -22.01879 -20.34909 -18.78351 -18.31453 -17.63673 -17.38562 -17.15601 -16.27029 -15.75031 -15.72965 -15.57678 -15.40553 -15.36348 -15.30157 -14.77288 -14.49368 -14.33837 -14.28263 -13.78228 -13.68406 -13.22621 -12.91215 -12.76779 -12.29268 -12.17099 -12.09125 -12.02774 -11.92282 -11.71752 -11.47358 -10.92782 -10.90655 -10.81648 -10.36476 -10.09531 -9.84702 -9.78587 -9.72419 -9.20640 -9.13900 -8.94987 -8.86047 -8.55715 -7.12887 -5.88680 -3.19364 0.63172 0.78641 2.73629 3.08230 3.38346 3.44144 3.45248 3.47066 3.66883 4.20870 4.35184 4.44478 4.50254 4.66530 4.79466 4.90812 5.16056 5.23067 5.32717 5.47995 5.52001 5.53221 5.58982 5.62843 5.68799 5.74627 5.78854 5.90054 5.97239 6.06340 6.09858 6.17288 6.28440 6.37077 6.49503 6.51224 6.53484 6.68995 6.75695 6.90358 7.63221 7.68668 7.87601 8.28126 8.47612 9.41442 9.90673 10.27562 11.32870 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.004988 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.680490 B = 5612.300980 C = 7408.067620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.004 4.004 3 Si 0.900 3.100 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.189 3.811 11 C 0.118 3.882 12 N -0.682 5.682 13 C 0.560 3.440 14 O -0.538 6.538 15 C -0.192 4.192 16 C 0.170 3.830 17 F -0.114 7.114 18 C -0.167 4.167 19 C -0.049 4.049 20 C -0.170 4.170 21 C 0.160 3.840 22 F -0.123 7.123 23 C -0.154 4.154 24 C 0.070 3.930 25 O -0.393 6.393 26 C 0.066 3.934 27 C -0.151 4.151 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.407 0.593 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.811 -8.214 -10.317 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.097 3.903 11 C -0.007 4.007 12 N -0.331 5.331 13 C 0.343 3.657 14 O -0.416 6.416 15 C -0.197 4.197 16 C 0.150 3.850 17 F -0.092 7.092 18 C -0.186 4.186 19 C -0.067 4.067 20 C -0.189 4.189 21 C 0.140 3.860 22 F -0.101 7.101 23 C -0.195 4.195 24 C -0.006 4.006 25 O -0.312 6.312 26 C -0.010 4.010 27 C -0.190 4.190 28 H 0.065 0.935 29 H 0.220 0.780 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.243 0.757 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.838 -8.419 -10.235 13.380 hybrid contribution -0.053 1.453 -0.001 1.454 sum -1.891 -6.966 -10.236 12.525 Atomic orbital electron populations 1.69639 1.04996 1.25761 1.57251 1.24671 0.95399 0.97502 1.02436 0.86298 0.78814 0.84107 0.77645 1.21628 1.21838 1.20745 1.19050 0.90989 0.83606 1.43165 0.91194 1.42503 1.06128 0.99439 1.87451 1.19843 0.91542 0.87422 0.91514 1.21865 0.93252 0.99896 0.85721 1.45727 1.14982 1.67793 1.04567 1.17669 0.86931 0.78232 0.82864 1.90786 1.16530 1.48890 1.85373 1.20069 1.04309 0.93122 1.02239 1.17391 0.92269 0.82988 0.92345 1.91642 1.77309 1.57703 1.82531 1.21195 0.98966 1.01820 0.96634 1.20943 0.96575 0.90836 0.98373 1.21115 1.01382 0.98881 0.97490 1.17303 0.96127 0.78429 0.94151 1.91564 1.94398 1.36033 1.88136 1.22491 0.99029 1.01433 0.96514 1.22441 0.91172 0.90432 0.96575 1.87803 1.46553 1.46021 1.50784 1.22458 0.91069 1.01579 0.85940 1.22358 0.99375 0.98726 0.98507 0.93490 0.78016 0.91298 0.92364 0.75683 0.83415 0.83565 0.83544 0.92519 0.90464 0.91487 0.90290 0.92328 0.89968 0.91251 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.77 13.07 55.49 0.73 -25.05 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 3 Si 0.90 21.77 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -5.89 8.69 -15.06 -0.13 -6.02 16 8 H 0.07 1.76 6.76 -52.49 -0.35 1.41 16 9 N -0.71 -15.28 3.66 -47.06 -0.17 -15.46 16 10 C 0.19 3.38 0.41 -131.63 -0.05 3.32 16 11 C 0.12 2.20 4.29 -4.04 -0.02 2.19 16 12 N -0.68 -12.66 5.12 -61.34 -0.31 -12.97 16 13 C 0.56 10.77 6.54 -12.47 -0.08 10.69 16 14 O -0.54 -11.93 17.10 5.28 0.09 -11.84 16 15 C -0.19 -3.10 5.64 -104.86 -0.59 -3.69 16 16 C 0.17 2.60 7.29 -38.96 -0.28 2.31 16 17 F -0.11 -2.08 16.83 2.25 0.04 -2.04 16 18 C -0.17 -1.82 10.01 -39.57 -0.40 -2.22 16 19 C -0.05 -0.42 10.03 -39.53 -0.40 -0.81 16 20 C -0.17 -1.64 10.01 -39.56 -0.40 -2.03 16 21 C 0.16 2.15 7.29 -38.97 -0.28 1.87 16 22 F -0.12 -1.75 16.83 2.25 0.04 -1.72 16 23 C -0.15 -2.64 4.85 -26.59 -0.13 -2.77 16 24 C 0.07 1.20 6.68 37.21 0.25 1.44 16 25 O -0.39 -6.72 10.77 -35.23 -0.38 -7.10 16 26 C 0.07 1.04 6.67 37.21 0.25 1.29 16 27 C -0.15 -2.35 4.81 -26.59 -0.13 -2.48 16 28 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.38 8.85 6.67 -40.82 -0.27 8.58 16 30 H 0.07 1.44 7.45 -51.93 -0.39 1.05 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.41 7.48 7.43 -40.82 -0.30 7.18 16 33 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.41 7.23 -51.93 -0.38 1.03 16 38 H 0.07 1.30 7.75 -51.93 -0.40 0.90 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.00 7.05 -51.93 -0.37 0.64 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.04 7.41 -51.93 -0.38 0.66 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -30.57 363.90 -7.36 -37.94 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -5.36 Total: 13.12 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.49 Total: 2.89 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.24 Total: -53.48 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.29 Total: -18.94 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.08 Total: -3.75 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.57 -7.36 -37.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671952335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.901 kcal (2) G-P(sol) polarization free energy of solvation -30.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds