Wall clock time and date at job start Sat Apr 11 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48500 * 109.47059 * 270.00393 * 3 2 1 5 5 H 1.48501 * 109.47082 * 30.00420 * 3 2 1 6 6 H 1.48497 * 109.46981 * 150.00053 * 3 2 1 7 7 C 1.38807 * 120.00349 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00299 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99733 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99861 * 174.44730 * 9 7 2 11 11 C 1.52999 * 109.54245 * 302.39240 * 10 9 7 12 12 N 1.46502 * 109.46831 * 305.14567 * 11 10 9 13 13 C 1.34778 * 119.99897 * 185.04887 * 12 11 10 14 14 O 1.21594 * 119.99904 * 0.02562 * 13 12 11 15 15 C 1.47544 * 120.00002 * 179.97438 * 13 12 11 16 16 C 1.39905 * 120.18505 * 89.73097 * 15 13 12 17 17 F 1.35103 * 120.09658 * 359.97093 * 16 15 13 18 18 C 1.38223 * 119.80051 * 179.69909 * 16 15 13 19 19 C 1.38297 * 120.19271 * 0.59198 * 18 16 15 20 20 C 1.38307 * 120.38575 * 359.68148 * 19 18 16 21 21 C 1.38221 * 120.18551 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.09502 * 179.97438 * 21 20 19 23 23 C 1.53183 * 109.54450 * 62.56894 * 10 9 7 24 24 C 1.53099 * 109.15544 * 63.06348 * 23 10 9 25 25 O 1.42907 * 109.48688 * 57.47575 * 24 23 10 26 26 C 1.42897 * 114.09635 * 298.88326 * 25 24 23 27 27 C 1.53095 * 109.41433 * 61.16173 * 26 25 24 28 28 H 0.97001 * 120.00390 * 359.97438 * 1 2 3 29 29 H 0.96991 * 120.00417 * 354.43967 * 9 7 2 30 30 H 1.09001 * 109.47000 * 65.14191 * 11 10 9 31 31 H 1.08998 * 109.47487 * 185.14542 * 11 10 9 32 32 H 0.96995 * 120.00480 * 5.04342 * 12 11 10 33 33 H 1.08004 * 119.90190 * 180.30981 * 18 16 15 34 34 H 1.08002 * 119.81140 * 179.69657 * 19 18 16 35 35 H 1.07995 * 119.90551 * 180.02562 * 20 19 18 36 36 H 1.08996 * 109.51691 * 182.88381 * 23 10 9 37 37 H 1.09004 * 109.51853 * 303.07206 * 23 10 9 38 38 H 1.08995 * 109.41018 * 297.49327 * 24 23 10 39 39 H 1.08998 * 109.48901 * 177.50786 * 24 23 10 40 40 H 1.08994 * 109.48495 * 301.17889 * 26 25 24 41 41 H 1.09006 * 109.49169 * 181.14274 * 26 25 24 42 42 H 1.08995 * 109.52336 * 182.48241 * 27 26 25 43 43 H 1.08999 * 109.57829 * 62.32186 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0531 -3.6537 -0.1249 11 6 2.8730 -3.6489 -1.4167 12 7 1.9925 -3.3660 -2.5529 13 6 2.4779 -3.4120 -3.8094 14 8 3.6465 -3.6887 -3.9999 15 6 1.5911 -3.1276 -4.9537 16 6 1.4518 -1.8185 -5.4274 17 9 2.1290 -0.8091 -4.8378 18 6 0.6236 -1.5620 -6.5039 19 6 -0.0756 -2.5929 -7.1046 20 6 0.0518 -3.8891 -6.6392 21 6 0.8802 -4.1644 -5.5675 22 9 1.0029 -5.4311 -5.1140 23 6 2.9890 -3.8259 1.0754 24 6 2.1537 -3.9107 2.3557 25 8 1.2269 -4.9933 2.2494 26 6 0.2961 -4.8610 1.1732 27 6 1.0566 -4.8166 -0.1548 28 1 -0.4851 0.8400 0.0004 29 1 0.3591 -2.3901 0.0794 30 1 3.6442 -2.8811 -1.3546 31 1 3.3410 -4.6238 -1.5536 32 1 1.0602 -3.1456 -2.4009 33 1 0.5188 -0.5528 -6.8741 34 1 -0.7248 -2.3848 -7.9423 35 1 -0.4976 -4.6883 -7.1144 36 1 3.5672 -4.7423 0.9578 37 1 3.6648 -2.9728 1.1357 38 1 1.6080 -2.9774 2.4946 39 1 2.8114 -4.0776 3.2087 40 1 -0.2738 -3.9401 1.2966 41 1 -0.3843 -5.7126 1.1741 42 1 0.3518 -4.6715 -0.9734 43 1 1.5946 -5.7535 -0.2991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671952335.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:09 Heat of formation + Delta-G solvation = -152.391564 kcal Electronic energy + Delta-G solvation = -30975.761444 eV Core-core repulsion = 26463.437286 eV Total energy + Delta-G solvation = -4512.324157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.20723 -50.17740 -41.31122 -40.44965 -39.26739 -37.36988 -35.21234 -34.00078 -32.40941 -32.01680 -31.45050 -30.99200 -28.39909 -26.01286 -25.28146 -24.42388 -23.94017 -23.38450 -21.75029 -20.27046 -19.52140 -19.15735 -18.71962 -18.45173 -17.58821 -17.17781 -16.90103 -16.79657 -16.73296 -16.64020 -16.48861 -16.10774 -16.06398 -15.73335 -15.54724 -15.34386 -15.28762 -14.74050 -14.28002 -13.89534 -13.72847 -13.66024 -13.24373 -13.09581 -13.02077 -13.00465 -12.89521 -12.88900 -12.72363 -12.26371 -12.13524 -11.75322 -11.59376 -11.30401 -11.18634 -10.94124 -10.38192 -10.20505 -10.13725 -9.89042 -9.02467 -7.94368 -5.20938 -0.32977 -0.13189 1.26634 1.41139 1.45039 1.48878 2.03753 2.28288 2.52967 2.64840 3.04292 3.26707 3.36655 3.45087 3.67619 3.74679 3.74910 3.80545 3.93788 4.09807 4.11467 4.19341 4.42506 4.50995 4.59174 4.63810 4.69620 4.70725 4.78278 4.85344 4.88972 4.95769 4.96934 5.03453 5.09573 5.16009 5.23026 5.29614 5.37194 5.57984 5.63604 6.26831 6.33542 6.35823 6.96957 7.37070 8.03523 8.31510 9.27437 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.004988 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.680490 B = 5612.300980 C = 7408.067620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.056 4.056 3 Si 0.945 3.055 4 H -0.299 1.299 5 H -0.295 1.295 6 H -0.276 1.276 7 C -0.216 4.216 8 H 0.064 0.936 9 N -0.712 5.712 10 C 0.187 3.813 11 C 0.123 3.877 12 N -0.680 5.680 13 C 0.556 3.444 14 O -0.578 6.578 15 C -0.224 4.224 16 C 0.131 3.869 17 F -0.145 7.145 18 C -0.156 4.156 19 C -0.025 4.025 20 C -0.148 4.148 21 C 0.143 3.857 22 F -0.133 7.133 23 C -0.151 4.151 24 C 0.076 3.924 25 O -0.395 6.395 26 C 0.067 3.933 27 C -0.143 4.143 28 H 0.248 0.752 29 H 0.378 0.622 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.407 0.593 33 H 0.173 0.827 34 H 0.201 0.799 35 H 0.187 0.813 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.037 0.963 39 H 0.102 0.898 40 H 0.039 0.961 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.339 -9.715 -12.198 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.249 4.249 3 Si 0.776 3.224 4 H -0.227 1.227 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.348 4.348 8 H 0.082 0.918 9 N -0.353 5.353 10 C 0.096 3.904 11 C -0.003 4.003 12 N -0.328 5.328 13 C 0.341 3.659 14 O -0.460 6.460 15 C -0.228 4.228 16 C 0.111 3.889 17 F -0.124 7.124 18 C -0.175 4.175 19 C -0.042 4.042 20 C -0.166 4.166 21 C 0.123 3.877 22 F -0.112 7.112 23 C -0.191 4.191 24 C -0.001 4.001 25 O -0.314 6.314 26 C -0.010 4.010 27 C -0.181 4.181 28 H 0.058 0.942 29 H 0.212 0.788 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.244 0.756 33 H 0.190 0.810 34 H 0.218 0.782 35 H 0.204 0.796 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.120 0.880 40 H 0.057 0.943 41 H 0.131 0.869 42 H 0.093 0.907 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.353 -9.947 -12.104 16.022 hybrid contribution 0.415 1.825 0.498 1.937 sum -2.938 -8.122 -11.606 14.467 Atomic orbital electron populations 1.69734 1.05721 1.25520 1.59559 1.25151 0.96019 0.99597 1.04143 0.85576 0.78136 0.81874 0.76805 1.22740 1.22151 1.20170 1.19167 0.90765 0.84748 1.40162 0.91841 1.42494 1.05764 0.99885 1.87135 1.20034 0.92132 0.86850 0.91351 1.21789 0.92833 0.99405 0.86236 1.45762 1.14828 1.67499 1.04685 1.18256 0.86946 0.76963 0.83747 1.90736 1.18405 1.50741 1.86076 1.19974 1.05921 0.94697 1.02251 1.17899 0.94380 0.82122 0.94503 1.91555 1.78452 1.58854 1.83493 1.21614 0.97212 1.04005 0.94661 1.21599 0.95065 0.89246 0.98296 1.21641 0.99193 1.00641 0.95157 1.17617 0.97169 0.77438 0.95455 1.91533 1.94617 1.36489 1.88524 1.22447 0.98715 1.01847 0.96102 1.22378 0.91109 0.89352 0.97244 1.87808 1.46649 1.45631 1.51341 1.22560 0.91007 1.02058 0.85377 1.22308 0.98917 0.98023 0.98887 0.94240 0.78801 0.94221 0.91242 0.75619 0.80972 0.78175 0.79622 0.90329 0.92009 0.94425 0.87981 0.94260 0.86856 0.90682 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.32 13.07 21.65 0.28 -54.04 16 2 C -0.06 -3.03 5.50 84.86 0.47 -2.57 16 3 Si 0.94 45.93 29.55 68.60 2.03 47.96 16 4 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.22 -11.04 8.69 84.03 0.73 -10.31 16 8 H 0.06 3.30 6.76 -2.91 -0.02 3.28 16 9 N -0.71 -31.19 3.66 -302.80 -1.11 -32.30 16 10 C 0.19 6.71 0.41 3.72 0.00 6.71 16 11 C 0.12 4.70 4.29 86.38 0.37 5.07 16 12 N -0.68 -26.15 5.12 -466.25 -2.39 -28.53 16 13 C 0.56 22.32 6.54 86.70 0.57 22.89 16 14 O -0.58 -26.98 17.10 -4.01 -0.07 -27.05 16 15 C -0.22 -7.32 5.64 -20.02 -0.11 -7.44 16 16 C 0.13 4.02 7.29 22.67 0.17 4.19 16 17 F -0.15 -5.59 16.83 44.97 0.76 -4.83 16 18 C -0.16 -2.99 10.01 22.28 0.22 -2.77 16 19 C -0.02 -0.29 10.03 22.30 0.22 -0.07 16 20 C -0.15 -2.23 10.01 22.28 0.22 -2.01 16 21 C 0.14 3.66 7.29 22.67 0.17 3.82 16 22 F -0.13 -3.69 16.83 44.97 0.76 -2.93 16 23 C -0.15 -5.09 4.85 30.69 0.15 -4.94 16 24 C 0.08 2.52 6.68 72.02 0.48 3.00 16 25 O -0.40 -12.85 10.77 -148.98 -1.60 -14.45 16 26 C 0.07 1.98 6.67 72.01 0.48 2.46 16 27 C -0.14 -4.27 4.81 30.68 0.15 -4.12 16 28 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 29 H 0.38 17.78 6.67 -92.71 -0.62 17.17 16 30 H 0.04 1.73 7.45 -2.39 -0.02 1.72 16 31 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.41 15.50 7.43 -92.71 -0.69 14.81 16 33 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.20 0.34 8.06 -2.91 -0.02 0.32 16 35 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 2.27 7.23 -2.38 -0.02 2.25 16 38 H 0.04 1.47 7.75 -2.39 -0.02 1.45 16 39 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.04 1.33 7.05 -2.39 -0.02 1.31 16 41 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 42 H 0.07 2.17 7.41 -2.39 -0.02 2.15 16 43 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -71.02 363.90 2.71 -68.31 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: -0.23 Total: 33.93 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 4.28 Total: 13.92 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -3.21 Total: -114.86 kcal Atomic # 8 Polarization: -39.82 SS G_CDS: -1.67 Total: -41.50 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 1.51 Total: -7.76 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -71.02 2.71 -68.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671952335.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.080 kcal (2) G-P(sol) polarization free energy of solvation -71.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds