Wall clock time and date at job start Sat Apr 11 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00638 * 2 1 4 4 H 1.48505 * 109.47084 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47199 * 120.00214 * 3 2 1 6 6 H 1.48502 * 109.47186 * 240.00272 * 3 2 1 7 7 C 1.38812 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99919 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00387 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00516 * 174.11481 * 9 7 2 11 11 C 1.52993 * 109.54130 * 62.24246 * 10 9 7 12 12 N 1.46503 * 109.46921 * 54.85375 * 11 10 9 13 13 C 1.34785 * 119.99719 * 176.63075 * 12 11 10 14 14 O 1.21551 * 120.00124 * 359.97438 * 13 12 11 15 15 C 1.47856 * 119.99658 * 179.97438 * 13 12 11 16 16 C 1.39546 * 120.12425 * 359.72128 * 15 13 12 17 17 C 1.38204 * 119.87877 * 179.77042 * 16 15 13 18 18 F 1.35101 * 119.94070 * 180.27722 * 17 16 15 19 19 C 1.38523 * 120.12085 * 0.53101 * 17 16 15 20 20 C 1.38533 * 120.24505 * 359.69999 * 19 17 16 21 21 F 1.35099 * 119.94175 * 180.02562 * 20 19 17 22 22 C 1.38201 * 120.12024 * 0.04295 * 20 19 17 23 23 C 1.53181 * 109.54096 * 301.97856 * 10 9 7 24 24 C 1.53092 * 109.16494 * 297.11164 * 23 10 9 25 25 O 1.42905 * 109.41413 * 302.39675 * 24 23 10 26 26 C 1.42899 * 114.10083 * 61.15379 * 25 24 23 27 27 C 1.53090 * 109.41543 * 298.84538 * 26 25 24 28 28 H 0.97008 * 119.99578 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99540 * 354.11890 * 9 7 2 30 30 H 1.09008 * 109.47163 * 174.85036 * 11 10 9 31 31 H 1.09000 * 109.47345 * 294.85017 * 11 10 9 32 32 H 0.96993 * 120.00002 * 356.62819 * 12 11 10 33 33 H 1.08009 * 120.05652 * 359.97438 * 16 15 13 34 34 H 1.07999 * 119.87693 * 179.72365 * 19 17 16 35 35 H 1.08001 * 120.06137 * 179.97438 * 22 20 19 36 36 H 1.08997 * 109.52307 * 57.01710 * 23 10 9 37 37 H 1.08996 * 109.52398 * 177.20485 * 23 10 9 38 38 H 1.08998 * 109.48379 * 182.40814 * 24 23 10 39 39 H 1.09006 * 109.48932 * 62.38007 * 24 23 10 40 40 H 1.09001 * 109.47803 * 178.85854 * 26 25 24 41 41 H 1.09002 * 109.48645 * 58.83521 * 26 25 24 42 42 H 1.09005 * 109.52107 * 297.70105 * 27 26 25 43 43 H 1.09004 * 109.57266 * 177.54948 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 1.2854 2.7465 0.0006 5 1 3.1042 1.6962 1.2125 6 1 3.1041 1.6962 -1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0520 -3.6535 -0.1312 11 6 2.9996 -3.8247 1.0577 12 7 2.2420 -3.7101 2.3064 13 6 2.8607 -3.8956 3.4894 14 8 4.0471 -4.1583 3.5202 15 6 2.0962 -3.7794 4.7496 16 6 0.7354 -3.4722 4.7175 17 6 0.0246 -3.3695 5.8983 18 9 -1.2941 -3.0776 5.8684 19 6 0.6631 -3.5601 7.1128 20 6 2.0149 -3.8606 7.1508 21 9 2.6313 -4.0458 8.3387 22 6 2.7342 -3.9709 5.9759 23 6 2.8572 -3.6498 -1.4343 24 6 1.8937 -3.5562 -2.6202 25 8 0.9745 -4.6493 -2.5729 26 6 0.1610 -4.6772 -1.3984 27 6 1.0549 -4.8159 -0.1633 28 1 -0.4850 0.8401 -0.0004 29 1 0.3593 -2.3902 0.0859 30 1 3.4716 -4.8060 1.0078 31 1 3.7664 -3.0507 1.0256 32 1 1.2952 -3.5008 2.2818 33 1 0.2378 -3.3181 3.7713 34 1 0.1048 -3.4745 8.0333 35 1 3.7881 -4.2048 6.0067 36 1 3.5309 -2.7930 -1.4437 37 1 3.4363 -4.5704 -1.5072 38 1 2.4586 -3.5963 -3.5516 39 1 1.3438 -2.6164 -2.5687 40 1 -0.5224 -5.5249 -1.4496 41 1 -0.4117 -3.7522 -1.3307 42 1 1.5976 -5.7601 -0.2106 43 1 0.4403 -4.7937 0.7367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671957385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:13 Heat of formation + Delta-G solvation = -133.295782 kcal Electronic energy + Delta-G solvation = -30217.372941 eV Core-core repulsion = 25705.876838 eV Total energy + Delta-G solvation = -4511.496102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.23421 -49.16886 -40.20940 -39.24972 -37.95006 -35.89928 -33.71772 -32.39195 -31.34001 -30.69109 -30.52195 -29.24704 -27.08226 -24.46195 -24.09143 -23.09054 -22.95696 -22.00634 -20.45287 -18.99613 -18.40281 -17.42630 -17.27094 -16.69359 -16.39254 -16.21923 -16.00386 -15.68181 -15.50727 -15.49915 -15.28049 -14.97320 -14.61416 -14.50708 -14.35336 -13.90895 -13.76984 -13.29313 -12.97437 -12.69392 -12.46292 -12.21036 -12.14909 -12.03395 -11.96304 -11.77612 -11.51572 -10.96229 -10.94348 -10.84114 -10.43701 -10.12072 -9.92438 -9.79601 -9.72651 -9.37334 -9.26952 -9.02532 -8.84820 -8.65728 -7.18580 -5.93795 -3.25097 0.37081 0.71872 2.62182 3.20745 3.34589 3.40139 3.41625 3.54722 3.66534 4.08700 4.34441 4.38313 4.45854 4.52495 4.79596 4.80453 5.09251 5.16579 5.29463 5.30793 5.44944 5.49064 5.50247 5.59581 5.64983 5.71021 5.73245 5.86419 5.94789 6.01992 6.05103 6.13691 6.25158 6.36171 6.43641 6.46138 6.48964 6.66009 6.72321 6.80931 7.57823 7.68481 7.76531 8.23027 8.37270 9.35938 9.85084 10.21815 11.27534 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010152 B = 0.003789 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.344381 B = 7388.291560 C = 8334.703292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.003 4.003 3 Si 0.902 3.098 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.188 3.812 11 C 0.116 3.884 12 N -0.689 5.689 13 C 0.553 3.447 14 O -0.542 6.542 15 C -0.066 4.066 16 C -0.128 4.128 17 C 0.128 3.872 18 F -0.126 7.126 19 C -0.174 4.174 20 C 0.122 3.878 21 F -0.129 7.129 22 C -0.109 4.109 23 C -0.151 4.151 24 C 0.070 3.930 25 O -0.393 6.393 26 C 0.066 3.934 27 C -0.152 4.152 28 H 0.257 0.743 29 H 0.385 0.615 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.404 0.596 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 -10.078 8.088 12.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.355 5.355 10 C 0.096 3.904 11 C -0.010 4.010 12 N -0.339 5.339 13 C 0.338 3.662 14 O -0.421 6.421 15 C -0.070 4.070 16 C -0.147 4.147 17 C 0.108 3.892 18 F -0.104 7.104 19 C -0.194 4.194 20 C 0.102 3.898 21 F -0.107 7.107 22 C -0.129 4.129 23 C -0.192 4.192 24 C -0.007 4.007 25 O -0.312 6.312 26 C -0.011 4.011 27 C -0.190 4.190 28 H 0.067 0.933 29 H 0.219 0.781 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.241 0.759 33 H 0.169 0.831 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.649 -10.225 7.937 12.960 hybrid contribution -0.391 1.515 0.567 1.664 sum 0.258 -8.710 8.504 12.175 Atomic orbital electron populations 1.69628 1.05022 1.26016 1.56888 1.24695 0.95401 0.97550 1.02335 0.86363 0.78675 0.83753 0.77956 1.21731 1.21293 1.21172 1.19004 0.90968 0.83591 1.43580 0.91197 1.42492 1.06184 0.99497 1.87366 1.19843 0.91351 0.87441 0.91783 1.21922 0.95166 1.00580 0.83302 1.45699 1.14009 1.68945 1.05241 1.17903 0.86786 0.78149 0.83346 1.90765 1.14852 1.49178 1.87313 1.19696 0.92806 1.00321 0.94134 1.21494 0.93954 1.00651 0.98639 1.17074 0.78565 1.00298 0.93225 1.91572 1.31051 1.90562 1.97234 1.21174 0.94195 1.05131 0.98877 1.17072 0.90141 1.01432 0.81117 1.91546 1.82685 1.92624 1.43882 1.21277 1.02030 0.99972 0.89614 1.22440 0.98921 1.01607 0.96202 1.22455 0.90828 0.90281 0.97107 1.87800 1.52594 1.49701 1.41096 1.22456 0.92411 1.01685 0.84545 1.22362 0.98970 0.98705 0.98952 0.93327 0.78060 0.92266 0.91215 0.75922 0.83118 0.83079 0.82675 0.90379 0.92588 0.90363 0.91196 0.90050 0.92159 0.91118 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.08 13.07 55.49 0.73 -24.35 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 3 Si 0.90 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.24 -5.70 8.67 -15.06 -0.13 -5.84 16 8 H 0.07 1.68 6.78 -52.48 -0.36 1.32 16 9 N -0.71 -14.41 3.61 -47.06 -0.17 -14.58 16 10 C 0.19 3.11 0.41 -131.64 -0.05 3.06 16 11 C 0.12 1.93 4.38 -4.04 -0.02 1.91 16 12 N -0.69 -10.85 5.08 -61.24 -0.31 -11.16 16 13 C 0.55 8.93 7.77 -12.32 -0.10 8.83 16 14 O -0.54 -10.23 16.35 5.32 0.09 -10.15 16 15 C -0.07 -0.89 5.87 -104.98 -0.62 -1.51 16 16 C -0.13 -1.57 9.52 -39.11 -0.37 -1.95 16 17 C 0.13 1.48 7.29 -39.49 -0.29 1.19 16 18 F -0.13 -1.53 17.26 2.25 0.04 -1.49 16 19 C -0.17 -1.80 10.00 -39.37 -0.39 -2.19 16 20 C 0.12 1.36 7.29 -39.49 -0.29 1.07 16 21 F -0.13 -1.44 17.26 2.25 0.04 -1.40 16 22 C -0.11 -1.35 9.57 -39.10 -0.37 -1.73 16 23 C -0.15 -2.47 4.79 -26.59 -0.13 -2.60 16 24 C 0.07 1.17 6.68 37.20 0.25 1.42 16 25 O -0.39 -6.58 10.77 -35.23 -0.38 -6.96 16 26 C 0.07 0.99 6.67 37.20 0.25 1.24 16 27 C -0.15 -2.16 4.79 -26.60 -0.13 -2.29 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.38 8.36 6.81 -40.82 -0.28 8.09 16 30 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.07 1.32 7.47 -51.93 -0.39 0.93 16 32 H 0.40 6.05 5.45 -40.82 -0.22 5.83 16 33 H 0.15 1.78 6.40 -52.48 -0.34 1.44 16 34 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.16 1.89 7.65 -52.49 -0.40 1.49 16 36 H 0.08 1.37 7.20 -51.93 -0.37 0.99 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.01 7.14 -51.93 -0.37 0.64 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.89 7.37 -51.93 -0.38 0.51 16 LS Contribution 360.57 15.07 5.43 5.43 Total: -1.00 -27.72 360.57 -7.23 -34.95 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -5.18 Total: 13.23 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.48 Total: 0.45 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.24 Total: -50.09 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.29 Total: -17.11 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.08 Total: -2.89 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.72 -7.23 -34.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671957385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.350 kcal (2) G-P(sol) polarization free energy of solvation -27.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds