Wall clock time and date at job start Sat Apr 11 2020 05:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00638 * 2 1 4 4 H 1.48505 * 109.47084 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47199 * 120.00214 * 3 2 1 6 6 H 1.48502 * 109.47186 * 240.00272 * 3 2 1 7 7 C 1.38812 * 119.99502 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99919 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00387 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00516 * 174.11481 * 9 7 2 11 11 C 1.52993 * 109.54130 * 62.24246 * 10 9 7 12 12 N 1.46503 * 109.46921 * 54.85375 * 11 10 9 13 13 C 1.34785 * 119.99719 * 176.63075 * 12 11 10 14 14 O 1.21551 * 120.00124 * 359.97438 * 13 12 11 15 15 C 1.47856 * 119.99658 * 179.97438 * 13 12 11 16 16 C 1.39546 * 120.12425 * 359.72128 * 15 13 12 17 17 C 1.38204 * 119.87877 * 179.77042 * 16 15 13 18 18 F 1.35101 * 119.94070 * 180.27722 * 17 16 15 19 19 C 1.38523 * 120.12085 * 0.53101 * 17 16 15 20 20 C 1.38533 * 120.24505 * 359.69999 * 19 17 16 21 21 F 1.35099 * 119.94175 * 180.02562 * 20 19 17 22 22 C 1.38201 * 120.12024 * 0.04295 * 20 19 17 23 23 C 1.53181 * 109.54096 * 301.97856 * 10 9 7 24 24 C 1.53092 * 109.16494 * 297.11164 * 23 10 9 25 25 O 1.42905 * 109.41413 * 302.39675 * 24 23 10 26 26 C 1.42899 * 114.10083 * 61.15379 * 25 24 23 27 27 C 1.53090 * 109.41543 * 298.84538 * 26 25 24 28 28 H 0.97008 * 119.99578 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99540 * 354.11890 * 9 7 2 30 30 H 1.09008 * 109.47163 * 174.85036 * 11 10 9 31 31 H 1.09000 * 109.47345 * 294.85017 * 11 10 9 32 32 H 0.96993 * 120.00002 * 356.62819 * 12 11 10 33 33 H 1.08009 * 120.05652 * 359.97438 * 16 15 13 34 34 H 1.07999 * 119.87693 * 179.72365 * 19 17 16 35 35 H 1.08001 * 120.06137 * 179.97438 * 22 20 19 36 36 H 1.08997 * 109.52307 * 57.01710 * 23 10 9 37 37 H 1.08996 * 109.52398 * 177.20485 * 23 10 9 38 38 H 1.08998 * 109.48379 * 182.40814 * 24 23 10 39 39 H 1.09006 * 109.48932 * 62.38007 * 24 23 10 40 40 H 1.09001 * 109.47803 * 178.85854 * 26 25 24 41 41 H 1.09002 * 109.48645 * 58.83521 * 26 25 24 42 42 H 1.09005 * 109.52107 * 297.70105 * 27 26 25 43 43 H 1.09004 * 109.57266 * 177.54948 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 1.2854 2.7465 0.0006 5 1 3.1042 1.6962 1.2125 6 1 3.1041 1.6962 -1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0520 -3.6535 -0.1312 11 6 2.9996 -3.8247 1.0577 12 7 2.2420 -3.7101 2.3064 13 6 2.8607 -3.8956 3.4894 14 8 4.0471 -4.1583 3.5202 15 6 2.0962 -3.7794 4.7496 16 6 0.7354 -3.4722 4.7175 17 6 0.0246 -3.3695 5.8983 18 9 -1.2941 -3.0776 5.8684 19 6 0.6631 -3.5601 7.1128 20 6 2.0149 -3.8606 7.1508 21 9 2.6313 -4.0458 8.3387 22 6 2.7342 -3.9709 5.9759 23 6 2.8572 -3.6498 -1.4343 24 6 1.8937 -3.5562 -2.6202 25 8 0.9745 -4.6493 -2.5729 26 6 0.1610 -4.6772 -1.3984 27 6 1.0549 -4.8159 -0.1633 28 1 -0.4850 0.8401 -0.0004 29 1 0.3593 -2.3902 0.0859 30 1 3.4716 -4.8060 1.0078 31 1 3.7664 -3.0507 1.0256 32 1 1.2952 -3.5008 2.2818 33 1 0.2378 -3.3181 3.7713 34 1 0.1048 -3.4745 8.0333 35 1 3.7881 -4.2048 6.0067 36 1 3.5309 -2.7930 -1.4437 37 1 3.4363 -4.5704 -1.5072 38 1 2.4586 -3.5963 -3.5516 39 1 1.3438 -2.6164 -2.5687 40 1 -0.5224 -5.5249 -1.4496 41 1 -0.4117 -3.7522 -1.3307 42 1 1.5976 -5.7601 -0.2106 43 1 0.4403 -4.7937 0.7367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671957385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:12 Heat of formation + Delta-G solvation = -149.834350 kcal Electronic energy + Delta-G solvation = -30218.090107 eV Core-core repulsion = 25705.876838 eV Total energy + Delta-G solvation = -4512.213268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.12906 -50.10276 -41.44467 -40.52166 -39.06802 -37.31147 -35.24310 -33.98811 -32.38023 -31.96471 -31.49063 -30.93805 -28.37607 -25.98435 -25.44308 -24.37867 -23.97755 -23.26714 -21.66501 -20.28515 -19.66622 -19.05349 -18.37828 -17.70006 -17.44533 -17.18851 -17.12004 -17.04997 -16.76517 -16.47249 -16.41244 -16.27322 -16.17090 -15.78111 -15.48906 -15.36282 -15.30237 -14.67214 -14.18223 -13.88392 -13.74921 -13.66373 -13.18092 -13.13795 -13.04628 -12.97224 -12.88756 -12.81543 -12.67792 -12.26310 -12.09505 -11.74701 -11.44118 -11.20420 -11.12847 -10.95087 -10.36717 -10.31422 -9.96860 -9.96713 -8.97864 -7.90689 -5.17074 -0.60943 -0.22239 1.46289 1.49077 1.52088 1.53324 2.02960 2.43781 2.56518 2.69999 3.09172 3.13408 3.39138 3.44163 3.59104 3.75913 3.81869 3.84231 3.89795 3.97993 4.15999 4.25278 4.28950 4.49327 4.57026 4.61946 4.69758 4.75799 4.77833 4.81725 4.83689 4.90608 4.90937 5.04882 5.10710 5.21403 5.29273 5.35546 5.45123 5.52930 5.62978 6.30824 6.38639 6.48951 7.09859 7.40924 8.08892 8.35924 9.30935 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010152 B = 0.003789 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2757.344381 B = 7388.291560 C = 8334.703292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.057 4.057 3 Si 0.946 3.054 4 H -0.301 1.301 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.215 4.215 8 H 0.067 0.933 9 N -0.713 5.713 10 C 0.186 3.814 11 C 0.123 3.877 12 N -0.687 5.687 13 C 0.553 3.447 14 O -0.574 6.574 15 C -0.080 4.080 16 C -0.125 4.125 17 C 0.124 3.876 18 F -0.128 7.128 19 C -0.153 4.153 20 C 0.125 3.875 21 F -0.127 7.127 22 C -0.109 4.109 23 C -0.149 4.149 24 C 0.075 3.925 25 O -0.398 6.398 26 C 0.064 3.936 27 C -0.144 4.144 28 H 0.248 0.752 29 H 0.378 0.622 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.408 0.592 33 H 0.153 0.847 34 H 0.180 0.820 35 H 0.153 0.847 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.035 0.965 40 H 0.111 0.889 41 H 0.037 0.963 42 H 0.090 0.910 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.360 -11.639 9.045 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.250 4.250 3 Si 0.777 3.223 4 H -0.227 1.227 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.347 4.347 8 H 0.085 0.915 9 N -0.354 5.354 10 C 0.095 3.905 11 C -0.003 4.003 12 N -0.337 5.337 13 C 0.340 3.660 14 O -0.456 6.456 15 C -0.084 4.084 16 C -0.145 4.145 17 C 0.104 3.896 18 F -0.106 7.106 19 C -0.173 4.173 20 C 0.105 3.895 21 F -0.105 7.105 22 C -0.129 4.129 23 C -0.189 4.189 24 C -0.002 4.002 25 O -0.317 6.317 26 C -0.013 4.013 27 C -0.182 4.182 28 H 0.057 0.943 29 H 0.212 0.788 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.246 0.754 33 H 0.170 0.830 34 H 0.197 0.803 35 H 0.171 0.829 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.116 0.884 39 H 0.053 0.947 40 H 0.129 0.871 41 H 0.055 0.945 42 H 0.109 0.891 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.541 -11.814 8.889 14.794 hybrid contribution -0.316 1.908 0.307 1.958 sum 0.225 -9.906 9.196 13.519 Atomic orbital electron populations 1.69732 1.05831 1.25560 1.59623 1.25157 0.95917 0.99618 1.04306 0.85641 0.77464 0.81519 0.77633 1.22744 1.21687 1.20976 1.19155 0.90861 0.84659 1.39993 0.91532 1.42510 1.05859 0.99976 1.87031 1.20039 0.91852 0.86745 0.91869 1.21785 0.94557 1.00429 0.83543 1.45677 1.14102 1.68820 1.05078 1.18255 0.86529 0.77170 0.84078 1.90742 1.16252 1.50746 1.87826 1.19412 0.93137 1.02608 0.93212 1.21490 0.93492 1.00237 0.99268 1.17070 0.78472 1.00656 0.93359 1.91573 1.31188 1.90640 1.97246 1.21402 0.93747 1.02639 0.99513 1.16987 0.90362 1.01416 0.80726 1.91559 1.82728 1.92602 1.43603 1.21298 1.02102 0.99695 0.89801 1.22408 0.98660 1.02110 0.95712 1.22366 0.90648 0.88906 0.98259 1.87801 1.52671 1.49196 1.42025 1.22579 0.92546 1.01831 0.84310 1.22325 0.98485 0.98124 0.99250 0.94330 0.78840 0.90793 0.93870 0.75440 0.82977 0.80264 0.82906 0.91954 0.90219 0.88436 0.94682 0.87100 0.94465 0.89146 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.69 13.07 21.65 0.28 -52.41 16 2 C -0.06 -2.94 5.50 84.86 0.47 -2.48 16 3 Si 0.95 43.94 29.55 68.60 2.03 45.97 16 4 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.21 -10.24 8.67 84.03 0.73 -9.51 16 8 H 0.07 3.21 6.78 -2.91 -0.02 3.19 16 9 N -0.71 -28.77 3.61 -302.82 -1.09 -29.86 16 10 C 0.19 5.94 0.41 3.72 0.00 5.94 16 11 C 0.12 3.96 4.38 86.38 0.38 4.34 16 12 N -0.69 -21.13 5.08 -465.95 -2.37 -23.50 16 13 C 0.55 17.59 7.77 86.79 0.67 18.27 16 14 O -0.57 -21.63 16.35 -3.88 -0.06 -21.69 16 15 C -0.08 -2.10 5.87 -20.10 -0.12 -2.22 16 16 C -0.13 -2.92 9.52 22.58 0.21 -2.71 16 17 C 0.12 2.61 7.29 22.33 0.16 2.77 16 18 F -0.13 -2.86 17.26 44.97 0.78 -2.08 16 19 C -0.15 -2.74 10.00 22.41 0.22 -2.51 16 20 C 0.12 2.52 7.29 22.33 0.16 2.68 16 21 F -0.13 -2.54 17.26 44.97 0.78 -1.77 16 22 C -0.11 -2.58 9.57 22.58 0.22 -2.36 16 23 C -0.15 -4.68 4.79 30.69 0.15 -4.53 16 24 C 0.07 2.44 6.68 72.01 0.48 2.92 16 25 O -0.40 -12.60 10.77 -148.98 -1.60 -14.20 16 26 C 0.06 1.80 6.67 72.01 0.48 2.28 16 27 C -0.14 -3.76 4.79 30.68 0.15 -3.61 16 28 H 0.25 13.69 8.31 -92.70 -0.77 12.92 16 29 H 0.38 16.51 6.81 -92.71 -0.63 15.88 16 30 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.04 1.63 7.47 -2.39 -0.02 1.61 16 32 H 0.41 11.89 5.45 -92.71 -0.51 11.38 16 33 H 0.15 3.45 6.40 -2.91 -0.02 3.43 16 34 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.15 3.65 7.65 -2.91 -0.02 3.63 16 36 H 0.06 2.15 7.20 -2.39 -0.02 2.14 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.03 1.38 7.75 -2.38 -0.02 1.37 16 40 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.04 1.23 7.14 -2.39 -0.02 1.21 16 42 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.08 1.93 7.37 -2.38 -0.02 1.91 16 Total: -1.00 -59.52 360.57 3.05 -56.47 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.06 Total: 33.81 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 4.37 Total: 9.27 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -3.18 Total: -105.77 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.67 Total: -35.89 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 1.55 Total: -3.85 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -59.52 3.05 -56.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671957385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.365 kcal (2) G-P(sol) polarization free energy of solvation -59.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds