Wall clock time and date at job start Sat Apr 11 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48501 * 109.47173 * 239.99745 * 3 2 1 5 5 H 1.48497 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99624 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 H 1.09006 * 110.88356 * 51.11999 * 11 10 9 13 13 C 1.55156 * 111.00480 * 174.99948 * 11 10 9 14 14 C 1.54325 * 102.93905 * 153.57619 * 13 11 10 15 15 N 1.47017 * 107.27478 * 337.80757 * 14 13 11 16 16 C 1.34774 * 125.65105 * 178.89514 * 15 14 13 17 17 O 1.21281 * 120.00358 * 180.02562 * 16 15 14 18 18 C 1.50702 * 119.99737 * 0.02612 * 16 15 14 19 19 O 1.42905 * 109.46713 * 179.97438 * 18 16 15 20 20 C 1.35947 * 116.99453 * 179.97438 * 19 18 16 21 21 C 1.38722 * 120.02250 * 359.72878 * 20 19 18 22 22 C 1.38166 * 120.01278 * 179.78629 * 21 20 19 23 23 C 1.38408 * 120.05223 * 0.46691 * 22 21 20 24 24 F 1.35105 * 119.97495 * 179.76429 * 23 22 21 25 25 C 1.38646 * 120.04388 * 359.78797 * 23 22 21 26 26 F 1.35101 * 120.00867 * 180.02562 * 25 23 22 27 27 C 1.38359 * 119.98386 * 359.97327 * 25 23 22 28 28 C 1.47422 * 108.70227 * 358.93982 * 15 14 13 29 29 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 31 31 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 33 33 H 1.08997 * 110.72052 * 271.94098 * 13 11 10 34 34 H 1.09001 * 110.72116 * 35.21426 * 13 11 10 35 35 H 1.09000 * 109.88285 * 97.23153 * 14 13 11 36 36 H 1.09003 * 109.87875 * 218.23215 * 14 13 11 37 37 H 1.08993 * 109.47216 * 299.99819 * 18 16 15 38 38 H 1.09002 * 109.47398 * 59.99883 * 18 16 15 39 39 H 1.08001 * 119.99188 * 359.97438 * 21 20 19 40 40 H 1.08000 * 119.97311 * 180.22860 * 22 21 20 41 41 H 1.08004 * 120.02871 * 180.02562 * 27 25 23 42 42 H 1.08998 * 110.37155 * 265.29160 * 28 15 14 43 43 H 1.09000 * 110.36817 * 142.96570 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 6 1.0637 -4.8197 -0.0108 12 1 0.3255 -4.6960 -0.8033 13 6 1.7991 -6.1795 -0.1431 14 6 0.8243 -7.1667 0.5327 15 7 -0.0338 -6.3845 1.4346 16 6 -1.0316 -6.8784 2.1941 17 8 -1.6775 -6.1368 2.9039 18 6 -1.3448 -8.3521 2.1614 19 8 -2.4336 -8.6274 3.0451 20 6 -2.8449 -9.9201 3.1336 21 6 -2.2166 -10.9015 2.3808 22 6 -2.6318 -12.2159 2.4742 23 6 -3.6811 -12.5535 3.3113 24 9 -4.0889 -13.8386 3.3979 25 6 -4.3141 -11.5738 4.0608 26 9 -5.3378 -11.9042 4.8781 27 6 -3.8964 -10.2577 3.9722 28 6 0.3774 -4.9703 1.3698 29 1 -0.4849 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 2.6849 -3.7105 -0.8952 32 1 2.6843 -3.7187 0.8848 33 1 1.9450 -6.4386 -1.1918 34 1 2.7520 -6.1557 0.3855 35 1 0.2142 -7.6613 -0.2231 36 1 1.3839 -7.9095 1.1012 37 1 -1.6172 -8.6433 1.1470 38 1 -0.4682 -8.9171 2.4785 39 1 -1.4007 -10.6384 1.7238 40 1 -2.1398 -12.9800 1.8906 41 1 -4.3887 -9.4940 4.5560 42 1 1.0815 -4.7428 2.1702 43 1 -0.4940 -4.3186 1.4334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714387607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:50 Heat of formation + Delta-G solvation = -114.512695 kcal Electronic energy + Delta-G solvation = -27999.240918 eV Core-core repulsion = 23488.559312 eV Total energy + Delta-G solvation = -4510.681606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.86757 -48.93265 -40.91861 -39.90449 -38.01977 -37.18861 -34.75669 -32.49751 -31.69522 -30.63656 -30.21910 -29.21969 -28.22610 -25.33501 -23.99145 -23.59487 -22.75409 -22.08552 -20.23929 -19.63982 -19.26126 -17.98694 -17.89036 -17.37426 -17.13389 -16.91716 -16.63513 -16.31311 -16.04190 -15.54666 -15.34731 -14.92613 -14.75054 -14.58573 -14.48153 -14.20988 -13.82933 -13.50059 -13.31946 -13.23345 -12.95387 -12.90244 -12.63517 -12.44012 -12.27926 -11.91610 -11.70669 -11.41186 -11.34287 -10.89777 -10.71874 -10.68333 -10.52607 -10.10375 -9.96579 -9.71415 -9.62152 -8.90690 -8.76395 -8.74572 -6.96604 -5.78413 -3.08324 0.36566 0.49951 2.02423 2.38311 2.80756 3.05975 3.41634 3.42979 3.47294 3.48772 3.87513 3.95960 4.15724 4.19141 4.45128 4.47827 4.51696 4.55183 4.55475 4.66499 4.76618 4.85336 5.16252 5.21860 5.28227 5.30534 5.36914 5.47864 5.53082 5.55682 5.76903 5.84565 5.87792 6.00597 6.03496 6.12073 6.27843 6.30871 6.61841 6.66883 6.74344 7.33090 7.66721 7.96074 8.39685 9.50903 10.07073 10.41121 11.44080 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.001707 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.374331 B =16401.356873 C =17221.588924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.087 0.913 13 C -0.125 4.125 14 C 0.096 3.904 15 N -0.615 5.615 16 C 0.527 3.473 17 O -0.512 6.512 18 C 0.044 3.956 19 O -0.279 6.279 20 C 0.156 3.844 21 C -0.194 4.194 22 C -0.081 4.081 23 C 0.026 3.974 24 F -0.130 7.130 25 C 0.112 3.888 26 F -0.122 7.122 27 C -0.159 4.159 28 C 0.117 3.883 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.025 0.975 32 H 0.022 0.978 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.158 0.842 42 H 0.074 0.926 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.270 -28.853 2.475 29.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.105 0.895 13 C -0.163 4.163 14 C -0.027 4.027 15 N -0.352 5.352 16 C 0.313 3.687 17 O -0.386 6.386 18 C -0.034 4.034 19 O -0.191 6.191 20 C 0.110 3.890 21 C -0.213 4.213 22 C -0.100 4.100 23 C 0.006 3.994 24 F -0.109 7.109 25 C 0.092 3.908 26 F -0.100 7.100 27 C -0.179 4.179 28 C -0.004 4.004 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.176 0.824 42 H 0.092 0.908 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.702 -28.231 3.064 28.525 hybrid contribution 0.072 0.471 -0.053 0.479 sum -2.631 -27.760 3.011 28.046 Atomic orbital electron populations 1.69651 1.05122 1.25890 1.57296 1.24762 0.95529 0.97769 1.02799 0.86257 0.78513 0.83497 0.77821 1.21269 1.21674 1.21236 1.19155 0.90983 0.84111 1.43270 0.91190 1.42360 1.05885 0.99915 1.89593 1.20587 0.92689 0.84778 0.98270 1.22611 0.98548 0.94805 0.96533 0.89502 1.22650 0.98211 0.94170 1.01294 1.22149 0.92862 0.94977 0.92761 1.48460 1.32839 1.10656 1.43196 1.19456 0.79995 0.88756 0.80497 1.90809 1.48837 1.59624 1.39364 1.22584 0.90092 0.95692 0.95063 1.86214 1.48955 1.22489 1.61426 1.18649 0.92958 0.83588 0.93845 1.21223 1.03919 0.92351 1.03769 1.20849 0.94749 0.97228 0.97152 1.17535 0.99751 0.78969 1.03190 1.91531 1.89820 1.34141 1.95406 1.17225 0.88378 0.92328 0.92892 1.91564 1.55768 1.92892 1.69761 1.20211 0.99347 0.94974 1.03342 1.22415 1.00315 0.79905 0.97754 0.93371 0.78201 0.95735 0.95982 0.89739 0.90099 0.91330 0.91322 0.88521 0.88577 0.83561 0.83142 0.82439 0.90757 0.89585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -17.85 5.55 -59.90 -0.33 -18.19 16 10 C 0.16 3.00 5.72 -4.04 -0.02 2.98 16 11 C -0.11 -1.47 3.05 -88.47 -0.27 -1.74 16 12 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 13 C -0.12 -1.15 6.42 -24.90 -0.16 -1.31 16 14 C 0.10 0.74 6.49 -3.07 -0.02 0.72 16 15 N -0.62 -7.39 3.33 -170.52 -0.57 -7.96 16 16 C 0.53 6.93 7.93 -10.99 -0.09 6.85 16 17 O -0.51 -9.43 16.75 -14.36 -0.24 -9.67 16 18 C 0.04 0.37 4.41 36.01 0.16 0.52 16 19 O -0.28 -2.99 9.67 -39.49 -0.38 -3.38 16 20 C 0.16 1.33 6.68 -39.24 -0.26 1.07 16 21 C -0.19 -1.14 9.04 -39.43 -0.36 -1.49 16 22 C -0.08 -0.48 10.02 -39.55 -0.40 -0.87 16 23 C 0.03 0.21 7.30 -39.37 -0.29 -0.07 16 24 F -0.13 -1.22 17.18 2.25 0.04 -1.18 16 25 C 0.11 1.01 7.30 -39.39 -0.29 0.73 16 26 F -0.12 -1.23 17.18 2.25 0.04 -1.19 16 27 C -0.16 -1.40 9.96 -39.38 -0.39 -1.79 16 28 C 0.12 1.77 6.32 -2.53 -0.02 1.75 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.38 9.95 7.67 -40.82 -0.31 9.64 16 31 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.02 0.41 7.96 -51.93 -0.41 -0.01 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.53 7.65 -51.93 -0.40 0.13 16 38 H 0.10 0.50 7.67 -51.93 -0.40 0.10 16 39 H 0.15 0.45 6.29 -52.49 -0.33 0.12 16 40 H 0.15 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.16 1.30 8.06 -52.48 -0.42 0.87 16 42 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16 43 H 0.09 1.56 8.04 -51.93 -0.42 1.14 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -34.64 373.91 -8.36 -43.00 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.60 Total: 3.05 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -2.65 Total: 0.04 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.17 Total: -53.50 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.62 Total: -13.05 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.08 Total: -2.37 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.64 -8.36 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714387607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.515 kcal (2) G-P(sol) polarization free energy of solvation -34.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds