Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38236 * 119.84242 * 2 1 4 4 C 1.38268 * 120.14770 * 179.69588 * 3 2 1 5 5 F 1.35100 * 120.08638 * 180.27635 * 4 3 2 6 6 C 1.39847 * 119.82541 * 0.57636 * 4 3 2 7 7 C 1.47702 * 120.15091 * 179.69761 * 6 4 3 8 8 O 1.21574 * 119.99734 * 359.72896 * 7 6 4 9 9 N 1.34773 * 119.99860 * 179.72569 * 7 6 4 10 10 C 1.46503 * 119.99675 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46949 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.92025 * 308.90285 * 11 10 9 13 13 C 1.54914 * 111.00479 * 72.80144 * 11 10 9 14 14 N 1.47424 * 104.83283 * 155.08320 * 13 11 10 15 15 C 1.36936 * 125.64804 * 155.91066 * 14 13 11 16 16 H 1.07995 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99914 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00046 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99790 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47181 * 59.99868 * 19 17 15 21 21 H 1.48507 * 109.46908 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47064 * 299.99676 * 19 17 15 23 23 C 1.47024 * 108.70367 * 335.86949 * 14 13 11 24 24 C 1.54320 * 107.27028 * 1.06341 * 23 14 13 25 25 H 1.09007 * 110.87037 * 263.75332 * 24 23 14 26 26 O 1.42905 * 110.72270 * 140.55296 * 24 23 14 27 27 C 1.39613 * 119.69339 * 359.42542 * 6 4 3 28 28 C 1.38110 * 119.85142 * 0.27615 * 27 6 4 29 29 F 1.35102 * 119.91531 * 180.02562 * 28 27 6 30 30 H 1.08996 * 109.47501 * 270.02710 * 1 2 3 31 31 H 1.09003 * 109.47124 * 30.02311 * 1 2 3 32 32 H 1.09001 * 109.46797 * 150.02424 * 1 2 3 33 33 H 1.08005 * 119.92258 * 359.97147 * 3 2 1 34 34 H 0.96991 * 120.00323 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47597 * 59.99798 * 10 9 7 36 36 H 1.09000 * 109.47377 * 299.99741 * 10 9 7 37 37 H 1.08994 * 110.36827 * 273.91927 * 13 11 10 38 38 H 1.09000 * 110.36487 * 36.24428 * 13 11 10 39 39 H 0.97004 * 119.99602 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.88770 * 241.64003 * 23 14 13 41 41 H 1.09009 * 109.87952 * 120.47807 * 23 14 13 42 42 H 0.96705 * 113.99788 * 66.47530 * 26 24 23 43 43 H 1.08005 * 120.07236 * 180.29589 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1991 0.0000 4 6 3.5776 1.2064 0.0063 5 9 4.2486 2.3790 0.0120 6 6 4.2796 -0.0030 0.0006 7 6 5.7566 -0.0035 0.0005 8 8 6.3648 1.0492 0.0006 9 7 6.4301 -1.1709 0.0006 10 6 7.8951 -1.1713 0.0011 11 6 8.4046 -2.6139 0.0016 12 1 7.9311 -3.1937 0.7939 13 6 8.1869 -3.2803 -1.3798 14 7 9.2055 -4.3436 -1.4507 15 6 9.1309 -5.4699 -2.2260 16 1 8.2694 -5.6358 -2.8558 17 6 10.1620 -6.3989 -2.2015 18 7 11.2117 -6.1970 -1.4336 19 14 10.0598 -7.9357 -3.2586 20 1 9.9607 -7.5473 -4.6885 21 1 11.2776 -8.7602 -3.0524 22 1 8.8598 -8.7216 -2.8748 23 6 10.3153 -3.9941 -0.5519 24 6 9.9504 -2.6578 0.1284 25 1 10.4045 -1.8177 -0.3973 26 8 10.3450 -2.6653 1.5018 27 6 3.5779 -1.2100 0.0006 28 6 2.1968 -1.2022 0.0005 29 9 1.5164 -2.3695 0.0011 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6511 2.1322 -0.0005 34 1 5.9449 -2.0107 0.0010 35 1 8.2583 -0.6578 0.8912 36 1 8.2590 -0.6575 -0.8887 37 1 7.1865 -3.7087 -1.4409 38 1 8.3393 -2.5550 -2.1791 39 1 11.9324 -6.8460 -1.4168 40 1 11.2349 -3.8790 -1.1256 41 1 10.4409 -4.7716 0.2017 42 1 11.3024 -2.6923 1.6358 43 1 4.1139 -2.1477 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958156383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -123.652989 kcal Electronic energy + Delta-G solvation = -29097.699542 eV Core-core repulsion = 24586.621583 eV Total energy + Delta-G solvation = -4511.077959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.32432 -49.14486 -40.28754 -38.84976 -38.12819 -35.22962 -34.75079 -33.57541 -32.20467 -30.66732 -29.85802 -28.20499 -27.45759 -25.54331 -23.83057 -23.63819 -22.47709 -20.93956 -20.31130 -20.01461 -18.49215 -17.76335 -17.49439 -16.98038 -16.73811 -16.39930 -16.21424 -15.72890 -15.62822 -15.19894 -14.96677 -14.83486 -14.62726 -14.20658 -13.95360 -13.82414 -13.63625 -13.49564 -13.24771 -13.02511 -12.68664 -12.49146 -12.45442 -12.12882 -11.89161 -11.87632 -11.50642 -11.26292 -11.00564 -10.82968 -10.65477 -10.21827 -10.09166 -9.85181 -9.82822 -9.62212 -9.25601 -9.11443 -8.90576 -8.68964 -6.94142 -5.78980 -3.13765 0.12534 0.50918 2.38522 2.93866 3.22980 3.36453 3.40720 3.42003 3.64398 3.68062 3.99122 4.12103 4.39595 4.44579 4.58017 4.69937 4.88711 4.94605 5.04271 5.06023 5.13508 5.24046 5.39041 5.43902 5.44530 5.46815 5.57380 5.63022 5.64075 5.81578 5.96538 5.99249 6.16474 6.23737 6.27805 6.34905 6.48845 6.76870 7.35645 7.36262 7.45499 7.70985 8.05054 8.15310 8.16507 9.12333 9.72891 10.36882 11.32534 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.002628 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.883952 B =10653.205972 C =12215.687699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.066 4.066 3 C -0.140 4.140 4 C 0.156 3.844 5 F -0.109 7.109 6 C -0.147 4.147 7 C 0.556 3.444 8 O -0.523 6.523 9 N -0.715 5.715 10 C 0.133 3.867 11 C -0.109 4.109 12 H 0.090 0.910 13 C 0.141 3.859 14 N -0.602 5.602 15 C -0.232 4.232 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.923 5.923 19 Si 0.914 3.086 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.152 3.848 24 C 0.083 3.917 25 H 0.057 0.943 26 O -0.567 6.567 27 C -0.087 4.087 28 C 0.081 3.919 29 F -0.128 7.128 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.401 0.599 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.254 0.746 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.377 0.623 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.631 13.432 4.853 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.067 4.067 3 C -0.159 4.159 4 C 0.135 3.865 5 F -0.087 7.087 6 C -0.151 4.151 7 C 0.342 3.658 8 O -0.400 6.400 9 N -0.367 5.367 10 C 0.010 3.990 11 C -0.128 4.128 12 H 0.108 0.892 13 C 0.014 3.986 14 N -0.329 5.329 15 C -0.360 4.360 16 H 0.097 0.903 17 C -0.203 4.203 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.027 3.973 24 C 0.023 3.977 25 H 0.075 0.925 26 O -0.372 6.372 27 C -0.107 4.107 28 C 0.061 3.939 29 F -0.107 7.107 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.170 0.830 34 H 0.236 0.764 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.223 0.777 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.651 14.000 4.896 23.830 hybrid contribution 0.471 -1.398 -0.679 1.624 sum -18.181 12.602 4.217 22.520 Atomic orbital electron populations 1.20847 0.88965 1.04180 1.03606 1.19954 0.97672 0.90936 0.98185 1.20891 0.91652 0.99174 1.04157 1.17627 0.89560 0.81031 0.98308 1.91625 1.80307 1.44132 1.92627 1.19926 0.94504 0.92363 1.08348 1.17815 0.85983 0.84444 0.77576 1.90855 1.69256 1.30812 1.49101 1.45932 1.08266 1.08047 1.74422 1.21449 0.77729 0.97195 1.02619 1.22625 0.95809 0.94146 1.00269 0.89158 1.21633 0.93711 0.90933 0.92275 1.44297 1.17794 1.20848 1.49997 1.19017 1.03611 0.95615 1.17782 0.90295 1.24821 0.96661 0.99017 0.99832 1.69930 1.08995 1.36349 1.41694 0.86166 0.76929 0.82598 0.79861 1.21095 1.21548 1.21080 1.21827 0.91227 0.91034 0.93239 1.23121 0.93297 0.99178 0.82109 0.92471 1.86420 1.27946 1.97435 1.25359 1.21230 0.92552 0.98555 0.98344 1.17276 0.89456 0.81511 1.05608 1.91540 1.79678 1.45530 1.93933 0.89865 0.90250 0.90351 0.82967 0.76353 0.90828 0.90973 0.93961 0.95833 0.93589 0.93610 0.92367 0.77660 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 9.82 36.01 0.35 -0.22 16 2 C -0.07 -0.49 5.89 -104.49 -0.62 -1.10 16 3 C -0.14 -1.08 9.66 -39.57 -0.38 -1.47 16 4 C 0.16 1.70 7.28 -38.97 -0.28 1.41 16 5 F -0.11 -1.44 15.55 2.25 0.04 -1.40 16 6 C -0.15 -1.67 5.88 -104.92 -0.62 -2.29 16 7 C 0.56 7.83 7.77 -12.40 -0.10 7.74 16 8 O -0.52 -9.23 15.34 5.30 0.08 -9.15 16 9 N -0.72 -9.22 5.45 -61.30 -0.33 -9.55 16 10 C 0.13 1.96 5.13 -4.04 -0.02 1.94 16 11 C -0.11 -1.82 2.77 -88.47 -0.25 -2.07 16 12 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 13 C 0.14 2.73 6.65 -2.53 -0.02 2.71 16 14 N -0.60 -14.86 3.39 -170.07 -0.58 -15.44 16 15 C -0.23 -6.31 10.28 -15.06 -0.15 -6.46 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 18 N -0.92 -26.54 10.31 55.49 0.57 -25.96 16 19 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.15 3.56 5.15 -3.06 -0.02 3.54 16 24 C 0.08 1.52 3.80 -24.90 -0.09 1.42 16 25 H 0.06 0.97 8.04 -51.92 -0.42 0.56 16 26 O -0.57 -9.66 13.39 -35.23 -0.47 -10.13 16 27 C -0.09 -0.81 9.52 -39.12 -0.37 -1.18 16 28 C 0.08 0.71 7.23 -39.49 -0.29 0.43 16 29 F -0.13 -1.20 16.45 2.25 0.04 -1.16 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.08 0.39 7.62 -51.93 -0.40 -0.01 16 33 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.40 4.31 6.50 -40.82 -0.27 4.04 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.02 0.46 7.91 -51.93 -0.41 0.05 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.05 1.18 7.51 -51.93 -0.39 0.79 16 41 H 0.06 1.54 7.30 -51.92 -0.38 1.16 16 42 H 0.38 4.97 9.12 45.56 0.42 5.39 16 43 H 0.15 1.16 6.40 -52.48 -0.34 0.83 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -33.58 366.27 -7.77 -41.35 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.67 Total: 5.15 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.94 Total: 4.10 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.34 Total: -50.96 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.39 Total: -19.28 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.07 Total: -2.56 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.58 -7.77 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958156383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.300 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds