Wall clock time and date at job start Sat Apr 11 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38236 * 119.84242 * 2 1 4 4 C 1.38268 * 120.14770 * 179.69588 * 3 2 1 5 5 F 1.35100 * 120.08638 * 180.27635 * 4 3 2 6 6 C 1.39847 * 119.82541 * 0.57636 * 4 3 2 7 7 C 1.47702 * 120.15091 * 179.69761 * 6 4 3 8 8 O 1.21574 * 119.99734 * 359.72896 * 7 6 4 9 9 N 1.34773 * 119.99860 * 179.72569 * 7 6 4 10 10 C 1.46503 * 119.99675 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.46949 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.92025 * 308.90285 * 11 10 9 13 13 C 1.54914 * 111.00479 * 72.80144 * 11 10 9 14 14 N 1.47424 * 104.83283 * 155.08320 * 13 11 10 15 15 C 1.36936 * 125.64804 * 155.91066 * 14 13 11 16 16 H 1.07995 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99914 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00046 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99790 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47181 * 59.99868 * 19 17 15 21 21 H 1.48507 * 109.46908 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47064 * 299.99676 * 19 17 15 23 23 C 1.47024 * 108.70367 * 335.86949 * 14 13 11 24 24 C 1.54320 * 107.27028 * 1.06341 * 23 14 13 25 25 H 1.09007 * 110.87037 * 263.75332 * 24 23 14 26 26 O 1.42905 * 110.72270 * 140.55296 * 24 23 14 27 27 C 1.39613 * 119.69339 * 359.42542 * 6 4 3 28 28 C 1.38110 * 119.85142 * 0.27615 * 27 6 4 29 29 F 1.35102 * 119.91531 * 180.02562 * 28 27 6 30 30 H 1.08996 * 109.47501 * 270.02710 * 1 2 3 31 31 H 1.09003 * 109.47124 * 30.02311 * 1 2 3 32 32 H 1.09001 * 109.46797 * 150.02424 * 1 2 3 33 33 H 1.08005 * 119.92258 * 359.97147 * 3 2 1 34 34 H 0.96991 * 120.00323 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47597 * 59.99798 * 10 9 7 36 36 H 1.09000 * 109.47377 * 299.99741 * 10 9 7 37 37 H 1.08994 * 110.36827 * 273.91927 * 13 11 10 38 38 H 1.09000 * 110.36487 * 36.24428 * 13 11 10 39 39 H 0.97004 * 119.99602 * 180.02562 * 18 17 15 40 40 H 1.08994 * 109.88770 * 241.64003 * 23 14 13 41 41 H 1.09009 * 109.87952 * 120.47807 * 23 14 13 42 42 H 0.96705 * 113.99788 * 66.47530 * 26 24 23 43 43 H 1.08005 * 120.07236 * 180.29589 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1991 0.0000 4 6 3.5776 1.2064 0.0063 5 9 4.2486 2.3790 0.0120 6 6 4.2796 -0.0030 0.0006 7 6 5.7566 -0.0035 0.0005 8 8 6.3648 1.0492 0.0006 9 7 6.4301 -1.1709 0.0006 10 6 7.8951 -1.1713 0.0011 11 6 8.4046 -2.6139 0.0016 12 1 7.9311 -3.1937 0.7939 13 6 8.1869 -3.2803 -1.3798 14 7 9.2055 -4.3436 -1.4507 15 6 9.1309 -5.4699 -2.2260 16 1 8.2694 -5.6358 -2.8558 17 6 10.1620 -6.3989 -2.2015 18 7 11.2117 -6.1970 -1.4336 19 14 10.0598 -7.9357 -3.2586 20 1 9.9607 -7.5473 -4.6885 21 1 11.2776 -8.7602 -3.0524 22 1 8.8598 -8.7216 -2.8748 23 6 10.3153 -3.9941 -0.5519 24 6 9.9504 -2.6578 0.1284 25 1 10.4045 -1.8177 -0.3973 26 8 10.3450 -2.6653 1.5018 27 6 3.5779 -1.2100 0.0006 28 6 2.1968 -1.2022 0.0005 29 9 1.5164 -2.3695 0.0011 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6511 2.1322 -0.0005 34 1 5.9449 -2.0107 0.0010 35 1 8.2583 -0.6578 0.8912 36 1 8.2590 -0.6575 -0.8887 37 1 7.1865 -3.7087 -1.4409 38 1 8.3393 -2.5550 -2.1791 39 1 11.9324 -6.8460 -1.4168 40 1 11.2349 -3.8790 -1.1256 41 1 10.4409 -4.7716 0.2017 42 1 11.3024 -2.6923 1.6358 43 1 4.1139 -2.1477 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958156383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:35 Heat of formation + Delta-G solvation = -147.573717 kcal Electronic energy + Delta-G solvation = -29098.736823 eV Core-core repulsion = 24586.621583 eV Total energy + Delta-G solvation = -4512.115240 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.02597 -50.01885 -41.29510 -40.00310 -39.34924 -36.66117 -36.20609 -34.44865 -33.80953 -31.55643 -31.24620 -29.47846 -28.65651 -27.15230 -25.29141 -24.35618 -23.40503 -22.29739 -21.77123 -21.34604 -19.51704 -18.83374 -18.59167 -18.26980 -18.11335 -17.23554 -17.18556 -17.06629 -16.53046 -16.50291 -16.25554 -15.80304 -15.72323 -15.54046 -15.35780 -14.74052 -14.55552 -14.40079 -14.23266 -14.17413 -14.03033 -13.76274 -13.72396 -13.22479 -13.10971 -12.92535 -12.69208 -12.64977 -12.54881 -12.44635 -12.34604 -11.94038 -11.80848 -11.53879 -11.16384 -10.82711 -10.72880 -10.36710 -10.15251 -9.67463 -8.94582 -7.86986 -5.23591 -0.62811 -0.18194 1.46425 1.49313 1.52282 1.55453 1.90072 2.35918 2.47724 2.93314 2.95923 3.21611 3.32190 3.33876 3.45291 3.55758 3.63950 3.74040 3.87462 3.93003 4.13400 4.33738 4.39055 4.43322 4.44986 4.56635 4.58645 4.70509 4.75480 4.78664 4.84675 4.86064 4.92568 5.08467 5.15816 5.18297 5.32652 5.41246 5.47946 5.58617 5.70334 6.15631 6.33116 6.87653 7.00012 7.06343 7.73207 8.36441 9.22955 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.002628 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.883952 B =10653.205972 C =12215.687699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.053 4.053 3 C -0.127 4.127 4 C 0.136 3.864 5 F -0.128 7.128 6 C -0.165 4.165 7 C 0.556 3.444 8 O -0.565 6.565 9 N -0.707 5.707 10 C 0.147 3.853 11 C -0.090 4.090 12 H 0.089 0.911 13 C 0.138 3.862 14 N -0.625 5.625 15 C -0.244 4.244 16 H 0.087 0.913 17 C -0.066 4.066 18 N -0.952 5.952 19 Si 0.979 3.021 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.275 1.275 23 C 0.161 3.839 24 C 0.096 3.904 25 H 0.076 0.924 26 O -0.569 6.569 27 C -0.083 4.083 28 C 0.073 3.927 29 F -0.131 7.131 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.182 0.818 34 H 0.412 0.588 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.247 0.753 40 H 0.013 0.987 41 H 0.020 0.980 42 H 0.393 0.607 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.496 13.952 4.749 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.054 4.054 3 C -0.146 4.146 4 C 0.115 3.885 5 F -0.106 7.106 6 C -0.169 4.169 7 C 0.344 3.656 8 O -0.445 6.445 9 N -0.359 5.359 10 C 0.023 3.977 11 C -0.110 4.110 12 H 0.107 0.893 13 C 0.013 3.987 14 N -0.352 5.352 15 C -0.373 4.373 16 H 0.105 0.895 17 C -0.259 4.259 18 N -0.601 5.601 19 Si 0.807 3.193 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.201 1.201 23 C 0.035 3.965 24 C 0.036 3.964 25 H 0.093 0.907 26 O -0.377 6.377 27 C -0.102 4.102 28 C 0.054 3.946 29 F -0.109 7.109 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.199 0.801 34 H 0.250 0.750 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.038 0.962 42 H 0.243 0.757 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -21.553 14.516 4.795 26.425 hybrid contribution 1.275 -1.557 -0.633 2.109 sum -20.279 12.960 4.163 24.423 Atomic orbital electron populations 1.20981 0.86699 1.05260 1.04763 1.20297 0.99186 0.90092 0.95840 1.21153 0.90251 1.00587 1.02587 1.17995 0.90786 0.80261 0.99429 1.91575 1.80941 1.45116 1.92976 1.19714 0.92853 0.93477 1.10904 1.18189 0.87134 0.83820 0.76454 1.90828 1.70341 1.32174 1.51207 1.45800 1.07553 1.08551 1.73994 1.21178 0.78808 0.95263 1.02487 1.22419 0.94754 0.95187 0.98595 0.89250 1.21810 0.93154 0.89899 0.93812 1.44600 1.19369 1.21429 1.49796 1.19455 1.03647 0.96412 1.17749 0.89481 1.25674 0.96640 1.02154 1.01479 1.70156 1.09562 1.37034 1.43314 0.85141 0.76676 0.78986 0.78463 1.20267 1.22253 1.20118 1.21590 0.90168 0.92721 0.91987 1.22889 0.94468 0.96601 0.82431 0.90664 1.86389 1.29804 1.97185 1.24279 1.21287 0.92987 0.98256 0.97709 1.17412 0.89360 0.81967 1.05872 1.91538 1.79622 1.45792 1.93985 0.88476 0.88168 0.90344 0.80056 0.74997 0.90948 0.91209 0.92388 0.95211 0.94377 0.96915 0.96158 0.75716 0.81834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.82 71.24 0.70 -0.01 16 2 C -0.05 -0.63 5.89 -19.78 -0.12 -0.74 16 3 C -0.13 -1.64 9.66 22.28 0.22 -1.43 16 4 C 0.14 2.82 7.28 22.67 0.17 2.99 16 5 F -0.13 -3.36 15.55 44.97 0.70 -2.66 16 6 C -0.17 -3.61 5.88 -20.06 -0.12 -3.73 16 7 C 0.56 15.40 7.77 86.74 0.67 16.07 16 8 O -0.57 -20.07 15.34 -3.95 -0.06 -20.13 16 9 N -0.71 -17.38 5.45 -466.12 -2.54 -19.92 16 10 C 0.15 4.12 5.13 86.38 0.44 4.56 16 11 C -0.09 -2.91 2.77 -9.40 -0.03 -2.94 16 12 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 13 C 0.14 5.21 6.65 86.86 0.58 5.78 16 14 N -0.62 -31.05 3.39 -691.99 -2.35 -33.40 16 15 C -0.24 -13.31 10.28 84.03 0.86 -12.45 16 16 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 17 C -0.07 -3.72 5.49 84.86 0.47 -3.26 16 18 N -0.95 -56.50 10.31 21.65 0.22 -56.28 16 19 Si 0.98 44.99 29.55 68.60 2.03 47.01 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.16 7.75 5.15 86.73 0.45 8.19 16 24 C 0.10 3.47 3.80 31.78 0.12 3.59 16 25 H 0.08 2.48 8.04 -2.38 -0.02 2.46 16 26 O -0.57 -18.92 13.39 -148.98 -1.99 -20.91 16 27 C -0.08 -1.40 9.52 22.57 0.21 -1.19 16 28 C 0.07 1.12 7.23 22.33 0.16 1.29 16 29 F -0.13 -2.15 16.45 44.97 0.74 -1.41 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.10 0.22 8.08 -2.39 -0.02 0.20 16 32 H 0.08 0.52 7.62 -2.39 -0.02 0.50 16 33 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 34 H 0.41 8.16 6.50 -92.72 -0.60 7.55 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.04 7.96 -2.39 -0.02 2.02 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.03 1.12 7.91 -2.39 -0.02 1.10 16 39 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.01 0.68 7.51 -2.39 -0.02 0.66 16 41 H 0.02 1.12 7.30 -2.38 -0.02 1.10 16 42 H 0.39 10.11 9.12 -74.05 -0.68 9.44 16 43 H 0.16 2.21 6.40 -2.91 -0.02 2.19 16 Total: -1.00 -74.56 366.27 1.33 -73.22 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -0.20 Total: 17.74 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 4.79 Total: 16.74 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -4.67 Total: -109.60 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -2.06 Total: -41.05 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 1.44 Total: -4.07 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.56 1.33 -73.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958156383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.349 kcal (2) G-P(sol) polarization free energy of solvation -74.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds