Wall clock time and date at job start Sat Apr 11 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38237 * 119.84376 * 2 1 4 4 C 1.38265 * 120.14698 * 179.69726 * 3 2 1 5 5 F 1.35107 * 120.08610 * 180.28080 * 4 3 2 6 6 C 1.39848 * 119.83256 * 0.58224 * 4 3 2 7 7 C 1.47689 * 120.15744 * 179.69978 * 6 4 3 8 8 O 1.21567 * 120.00092 * 359.72031 * 7 6 4 9 9 N 1.34776 * 120.00396 * 179.72775 * 7 6 4 10 10 C 1.46494 * 120.00390 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47358 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.88445 * 57.42402 * 11 10 9 13 13 C 1.54908 * 111.00368 * 293.54522 * 11 10 9 14 14 N 1.47425 * 104.92961 * 204.85960 * 13 11 10 15 15 C 1.36938 * 125.65179 * 204.15650 * 14 13 11 16 16 H 1.08005 * 119.99558 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00146 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99779 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47595 * 59.99628 * 19 17 15 21 21 H 1.48504 * 109.46820 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46978 * 299.99208 * 19 17 15 23 23 C 1.47290 * 108.55742 * 24.15407 * 14 13 11 24 24 C 1.54325 * 107.30599 * 358.92448 * 23 14 13 25 25 H 1.08994 * 110.87038 * 96.25177 * 24 23 14 26 26 O 1.42903 * 110.72138 * 219.45307 * 24 23 14 27 27 C 1.39615 * 119.68775 * 359.42092 * 6 4 3 28 28 C 1.38113 * 119.85210 * 0.27664 * 27 6 4 29 29 F 1.35100 * 119.91958 * 179.97438 * 28 27 6 30 30 H 1.09002 * 109.47232 * 270.02180 * 1 2 3 31 31 H 1.09000 * 109.47436 * 30.01379 * 1 2 3 32 32 H 1.09001 * 109.47308 * 150.01985 * 1 2 3 33 33 H 1.08001 * 119.92346 * 359.97438 * 3 2 1 34 34 H 0.97004 * 119.99840 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47369 * 59.99227 * 10 9 7 36 36 H 1.09004 * 109.47192 * 299.99245 * 10 9 7 37 37 H 1.09002 * 110.36632 * 323.75356 * 13 11 10 38 38 H 1.08995 * 110.36781 * 85.96593 * 13 11 10 39 39 H 0.96999 * 120.00175 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.85762 * 239.50064 * 23 14 13 41 41 H 1.08995 * 110.00297 * 118.43011 * 23 14 13 42 42 H 0.96696 * 113.99847 * 293.52357 * 26 24 23 43 43 H 1.07999 * 120.07747 * 180.25120 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1948 1.1990 0.0000 4 6 3.5774 1.2064 0.0063 5 9 4.2485 2.3790 0.0120 6 6 4.2796 -0.0030 0.0004 7 6 5.7565 -0.0036 0.0004 8 8 6.3647 1.0490 0.0004 9 7 6.4300 -1.1709 0.0002 10 6 7.8950 -1.1714 0.0008 11 6 8.4045 -2.6141 0.0011 12 1 8.0172 -3.1632 -0.8573 13 6 8.0442 -3.3299 1.3267 14 7 9.0500 -4.3987 1.4668 15 6 8.8937 -5.5522 2.1881 16 1 7.9704 -5.7375 2.7169 17 6 9.9223 -6.4828 2.2405 18 7 11.0477 -6.2567 1.5964 19 14 9.7088 -8.0566 3.2238 20 1 8.5575 -8.8244 2.6854 21 1 10.9424 -8.8767 3.1194 22 1 9.4568 -7.7200 4.6480 23 6 10.2491 -4.0172 0.7013 24 6 9.9551 -2.6563 0.0357 25 1 10.3498 -1.8369 0.6364 26 8 10.4918 -2.6144 -1.2881 27 6 3.5779 -1.2100 0.0004 28 6 2.1967 -1.2023 0.0004 29 9 1.5163 -2.3694 -0.0001 30 1 -0.3634 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5140 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6510 2.1322 -0.0004 34 1 5.9448 -2.0109 0.0005 35 1 8.2582 -0.6580 0.8909 36 1 8.2589 -0.6575 -0.8890 37 1 8.1106 -2.6346 2.1635 38 1 7.0430 -3.7566 1.2675 39 1 11.7664 -6.9072 1.6327 40 1 10.4546 -4.7669 -0.0628 41 1 11.1049 -3.9256 1.3701 42 1 11.4579 -2.6383 -1.3217 43 1 4.1137 -2.1477 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958156385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:41 Heat of formation + Delta-G solvation = -123.782830 kcal Electronic energy + Delta-G solvation = -29131.931712 eV Core-core repulsion = 24620.848122 eV Total energy + Delta-G solvation = -4511.083590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.31827 -49.13994 -40.28753 -38.84923 -38.12046 -35.24212 -34.73154 -33.57172 -32.19500 -30.66279 -29.85681 -28.20543 -27.45019 -25.56181 -23.82969 -23.63407 -22.48244 -20.95393 -20.26973 -20.00850 -18.50605 -17.75526 -17.48942 -16.98405 -16.74194 -16.39413 -16.21239 -15.71959 -15.61014 -15.22091 -14.96502 -14.83067 -14.61950 -14.22911 -13.95720 -13.81803 -13.63321 -13.50470 -13.23152 -13.02058 -12.69139 -12.48938 -12.44947 -12.11841 -11.88725 -11.86940 -11.50575 -11.26366 -11.02382 -10.83007 -10.65432 -10.20749 -10.09366 -9.85244 -9.83213 -9.61771 -9.26496 -9.11065 -8.90192 -8.69547 -6.94465 -5.79326 -3.14027 0.12938 0.51407 2.38897 2.94111 3.23348 3.36324 3.40590 3.41882 3.64898 3.68485 3.99583 4.12595 4.39335 4.44982 4.58419 4.69624 4.88922 4.94536 5.04585 5.06517 5.14957 5.24562 5.38033 5.44217 5.44899 5.46018 5.57794 5.62779 5.64130 5.81261 5.96065 5.98998 6.15601 6.24397 6.29119 6.33766 6.47603 6.76433 7.34731 7.36555 7.44828 7.70429 8.05287 8.14669 8.16128 9.11528 9.72370 10.36670 11.32426 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002688 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.123220 B =10412.482336 C =12105.809333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.066 4.066 3 C -0.140 4.140 4 C 0.156 3.844 5 F -0.109 7.109 6 C -0.147 4.147 7 C 0.556 3.444 8 O -0.523 6.523 9 N -0.715 5.715 10 C 0.134 3.866 11 C -0.109 4.109 12 H 0.090 0.910 13 C 0.141 3.859 14 N -0.602 5.602 15 C -0.232 4.232 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.151 3.849 24 C 0.083 3.917 25 H 0.057 0.943 26 O -0.566 6.566 27 C -0.087 4.087 28 C 0.081 3.919 29 F -0.128 7.128 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.041 0.959 39 H 0.254 0.746 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.377 0.623 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.097 13.614 -4.908 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.067 4.067 3 C -0.159 4.159 4 C 0.135 3.865 5 F -0.087 7.087 6 C -0.151 4.151 7 C 0.342 3.658 8 O -0.400 6.400 9 N -0.367 5.367 10 C 0.011 3.989 11 C -0.129 4.129 12 H 0.109 0.891 13 C 0.014 3.986 14 N -0.329 5.329 15 C -0.360 4.360 16 H 0.097 0.903 17 C -0.203 4.203 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C 0.026 3.974 24 C 0.023 3.977 25 H 0.075 0.925 26 O -0.371 6.371 27 C -0.107 4.107 28 C 0.062 3.938 29 F -0.107 7.107 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.170 0.830 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.041 0.959 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.223 0.777 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.110 14.183 -5.013 23.542 hybrid contribution 0.398 -1.423 0.724 1.646 sum -17.711 12.760 -4.289 22.246 Atomic orbital electron populations 1.20846 0.88969 1.04139 1.03646 1.19953 0.97670 0.90937 0.98182 1.20888 0.91649 0.99171 1.04170 1.17627 0.89559 0.81027 0.98315 1.91626 1.80306 1.44136 1.92632 1.19922 0.94499 0.92363 1.08362 1.17811 0.85986 0.84437 0.77571 1.90853 1.69251 1.30824 1.49108 1.45931 1.08270 1.08066 1.74419 1.21436 0.77732 0.97172 1.02603 1.22625 0.95521 0.94038 1.00695 0.89145 1.21609 0.93718 0.90653 0.92590 1.44346 1.11982 1.18500 1.58078 1.19014 1.00075 0.93796 1.23130 0.90284 1.24819 0.96182 0.98938 1.00383 1.69923 1.05153 1.35934 1.45949 0.86166 0.76895 0.82829 0.79663 1.21075 1.21548 1.21095 1.21867 0.90049 0.90485 0.94973 1.23114 0.92123 0.99141 0.83279 0.92464 1.86420 1.25601 1.97287 1.27835 1.21232 0.92556 0.98559 0.98323 1.17278 0.89456 0.81513 1.05597 1.91539 1.79670 1.45533 1.93929 0.89833 0.90266 0.90367 0.82970 0.76326 0.91041 0.90824 0.95856 0.94037 0.93580 0.92370 0.93587 0.77660 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 9.82 36.00 0.35 -0.22 16 2 C -0.07 -0.49 5.89 -104.49 -0.62 -1.11 16 3 C -0.14 -1.09 9.66 -39.57 -0.38 -1.47 16 4 C 0.16 1.70 7.28 -38.97 -0.28 1.42 16 5 F -0.11 -1.44 15.55 2.25 0.04 -1.40 16 6 C -0.15 -1.68 5.88 -104.92 -0.62 -2.30 16 7 C 0.56 7.86 7.77 -12.40 -0.10 7.76 16 8 O -0.52 -9.24 15.34 5.31 0.08 -9.16 16 9 N -0.72 -9.26 5.36 -61.31 -0.33 -9.59 16 10 C 0.13 1.97 5.12 -4.05 -0.02 1.95 16 11 C -0.11 -1.83 2.83 -88.47 -0.25 -2.08 16 12 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 13 C 0.14 2.71 6.40 -2.53 -0.02 2.70 16 14 N -0.60 -14.83 3.40 -169.86 -0.58 -15.41 16 15 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 16 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 18 N -0.92 -26.52 10.33 55.49 0.57 -25.95 16 19 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.15 3.54 5.16 -2.92 -0.02 3.53 16 24 C 0.08 1.52 3.80 -24.90 -0.09 1.43 16 25 H 0.06 0.97 8.04 -51.93 -0.42 0.56 16 26 O -0.57 -9.65 13.39 -35.23 -0.47 -10.12 16 27 C -0.09 -0.82 9.52 -39.11 -0.37 -1.19 16 28 C 0.08 0.72 7.23 -39.49 -0.29 0.43 16 29 F -0.13 -1.21 16.45 2.25 0.04 -1.17 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.08 0.38 7.62 -51.93 -0.40 -0.01 16 33 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.40 4.36 6.37 -40.82 -0.26 4.10 16 35 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.06 1.54 7.31 -51.93 -0.38 1.16 16 41 H 0.05 1.18 7.51 -51.93 -0.39 0.79 16 42 H 0.38 4.96 9.12 45.56 0.42 5.38 16 43 H 0.15 1.18 6.40 -52.49 -0.34 0.84 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -33.54 366.14 -7.78 -41.32 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.68 Total: 5.21 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.95 Total: 4.10 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.33 Total: -50.95 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.39 Total: -19.28 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.07 Total: -2.58 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.54 -7.78 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958156385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.460 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds