Wall clock time and date at job start Sat Apr 11 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38237 * 119.84376 * 2 1 4 4 C 1.38265 * 120.14698 * 179.69726 * 3 2 1 5 5 F 1.35107 * 120.08610 * 180.28080 * 4 3 2 6 6 C 1.39848 * 119.83256 * 0.58224 * 4 3 2 7 7 C 1.47689 * 120.15744 * 179.69978 * 6 4 3 8 8 O 1.21567 * 120.00092 * 359.72031 * 7 6 4 9 9 N 1.34776 * 120.00396 * 179.72775 * 7 6 4 10 10 C 1.46494 * 120.00390 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47358 * 179.97438 * 10 9 7 12 12 H 1.09008 * 110.88445 * 57.42402 * 11 10 9 13 13 C 1.54908 * 111.00368 * 293.54522 * 11 10 9 14 14 N 1.47425 * 104.92961 * 204.85960 * 13 11 10 15 15 C 1.36938 * 125.65179 * 204.15650 * 14 13 11 16 16 H 1.08005 * 119.99558 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00146 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00086 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99779 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47595 * 59.99628 * 19 17 15 21 21 H 1.48504 * 109.46820 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46978 * 299.99208 * 19 17 15 23 23 C 1.47290 * 108.55742 * 24.15407 * 14 13 11 24 24 C 1.54325 * 107.30599 * 358.92448 * 23 14 13 25 25 H 1.08994 * 110.87038 * 96.25177 * 24 23 14 26 26 O 1.42903 * 110.72138 * 219.45307 * 24 23 14 27 27 C 1.39615 * 119.68775 * 359.42092 * 6 4 3 28 28 C 1.38113 * 119.85210 * 0.27664 * 27 6 4 29 29 F 1.35100 * 119.91958 * 179.97438 * 28 27 6 30 30 H 1.09002 * 109.47232 * 270.02180 * 1 2 3 31 31 H 1.09000 * 109.47436 * 30.01379 * 1 2 3 32 32 H 1.09001 * 109.47308 * 150.01985 * 1 2 3 33 33 H 1.08001 * 119.92346 * 359.97438 * 3 2 1 34 34 H 0.97004 * 119.99840 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.47369 * 59.99227 * 10 9 7 36 36 H 1.09004 * 109.47192 * 299.99245 * 10 9 7 37 37 H 1.09002 * 110.36632 * 323.75356 * 13 11 10 38 38 H 1.08995 * 110.36781 * 85.96593 * 13 11 10 39 39 H 0.96999 * 120.00175 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.85762 * 239.50064 * 23 14 13 41 41 H 1.08995 * 110.00297 * 118.43011 * 23 14 13 42 42 H 0.96696 * 113.99847 * 293.52357 * 26 24 23 43 43 H 1.07999 * 120.07747 * 180.25120 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1948 1.1990 0.0000 4 6 3.5774 1.2064 0.0063 5 9 4.2485 2.3790 0.0120 6 6 4.2796 -0.0030 0.0004 7 6 5.7565 -0.0036 0.0004 8 8 6.3647 1.0490 0.0004 9 7 6.4300 -1.1709 0.0002 10 6 7.8950 -1.1714 0.0008 11 6 8.4045 -2.6141 0.0011 12 1 8.0172 -3.1632 -0.8573 13 6 8.0442 -3.3299 1.3267 14 7 9.0500 -4.3987 1.4668 15 6 8.8937 -5.5522 2.1881 16 1 7.9704 -5.7375 2.7169 17 6 9.9223 -6.4828 2.2405 18 7 11.0477 -6.2567 1.5964 19 14 9.7088 -8.0566 3.2238 20 1 8.5575 -8.8244 2.6854 21 1 10.9424 -8.8767 3.1194 22 1 9.4568 -7.7200 4.6480 23 6 10.2491 -4.0172 0.7013 24 6 9.9551 -2.6563 0.0357 25 1 10.3498 -1.8369 0.6364 26 8 10.4918 -2.6144 -1.2881 27 6 3.5779 -1.2100 0.0004 28 6 2.1967 -1.2023 0.0004 29 9 1.5163 -2.3694 -0.0001 30 1 -0.3634 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5140 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6510 2.1322 -0.0004 34 1 5.9448 -2.0109 0.0005 35 1 8.2582 -0.6580 0.8909 36 1 8.2589 -0.6575 -0.8890 37 1 8.1106 -2.6346 2.1635 38 1 7.0430 -3.7566 1.2675 39 1 11.7664 -6.9072 1.6327 40 1 10.4546 -4.7669 -0.0628 41 1 11.1049 -3.9256 1.3701 42 1 11.4579 -2.6383 -1.3217 43 1 4.1137 -2.1477 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958156385.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:40 Heat of formation + Delta-G solvation = -147.624954 kcal Electronic energy + Delta-G solvation = -29132.965584 eV Core-core repulsion = 24620.848122 eV Total energy + Delta-G solvation = -4512.117462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.02556 -50.01779 -41.30005 -39.99781 -39.34539 -36.66568 -36.19855 -34.44477 -33.80195 -31.55423 -31.24499 -29.47861 -28.64795 -27.17063 -25.29061 -24.35727 -23.42086 -22.31777 -21.70280 -21.35798 -19.53286 -18.82950 -18.58523 -18.26925 -18.12071 -17.23686 -17.19997 -17.03893 -16.53314 -16.50080 -16.27625 -15.79607 -15.72568 -15.54954 -15.36171 -14.74700 -14.55575 -14.40323 -14.23318 -14.17249 -14.01547 -13.76846 -13.70718 -13.22672 -13.10645 -12.92371 -12.69344 -12.65283 -12.54655 -12.45950 -12.34626 -11.93077 -11.80697 -11.53109 -11.17001 -10.83044 -10.73168 -10.36767 -10.15348 -9.67461 -8.94582 -7.87067 -5.23530 -0.62860 -0.18197 1.46559 1.49443 1.52241 1.55554 1.89912 2.35891 2.47782 2.93314 2.95886 3.21458 3.32175 3.33841 3.45180 3.55157 3.64163 3.74755 3.86916 3.93032 4.12922 4.33773 4.38525 4.43219 4.44976 4.56665 4.58435 4.69515 4.75246 4.78268 4.84571 4.85936 4.93241 5.08499 5.15841 5.19212 5.31467 5.41071 5.47340 5.58620 5.70079 6.15237 6.32869 6.87699 6.99822 7.05839 7.72806 8.36606 9.23173 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002688 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.123220 B =10412.482336 C =12105.809333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.053 4.053 3 C -0.127 4.127 4 C 0.136 3.864 5 F -0.128 7.128 6 C -0.165 4.165 7 C 0.556 3.444 8 O -0.565 6.565 9 N -0.707 5.707 10 C 0.147 3.853 11 C -0.091 4.091 12 H 0.088 0.912 13 C 0.138 3.862 14 N -0.625 5.625 15 C -0.243 4.243 16 H 0.088 0.912 17 C -0.067 4.067 18 N -0.952 5.952 19 Si 0.979 3.021 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.277 1.277 23 C 0.160 3.840 24 C 0.097 3.903 25 H 0.076 0.924 26 O -0.569 6.569 27 C -0.083 4.083 28 C 0.073 3.927 29 F -0.131 7.131 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.182 0.818 34 H 0.412 0.588 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.058 0.942 39 H 0.247 0.753 40 H 0.020 0.980 41 H 0.013 0.987 42 H 0.393 0.607 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.983 14.153 -4.853 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.054 4.054 3 C -0.146 4.146 4 C 0.115 3.885 5 F -0.106 7.106 6 C -0.170 4.170 7 C 0.344 3.656 8 O -0.445 6.445 9 N -0.359 5.359 10 C 0.023 3.977 11 C -0.110 4.110 12 H 0.107 0.893 13 C 0.013 3.987 14 N -0.352 5.352 15 C -0.372 4.372 16 H 0.106 0.894 17 C -0.260 4.260 18 N -0.601 5.601 19 Si 0.807 3.193 20 H -0.201 1.201 21 H -0.223 1.223 22 H -0.203 1.203 23 C 0.035 3.965 24 C 0.037 3.963 25 H 0.094 0.906 26 O -0.377 6.377 27 C -0.103 4.103 28 C 0.054 3.946 29 F -0.109 7.109 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.200 0.800 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.038 0.962 41 H 0.031 0.969 42 H 0.243 0.757 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -21.032 14.720 -4.963 26.147 hybrid contribution 1.210 -1.586 0.696 2.113 sum -19.822 13.134 -4.268 24.158 Atomic orbital electron populations 1.20979 0.86699 1.05288 1.04739 1.20297 0.99185 0.90088 0.95836 1.21152 0.90249 1.00585 1.02581 1.17994 0.90783 0.80256 0.99424 1.91577 1.80937 1.45109 1.92978 1.19712 0.92858 0.93473 1.10909 1.18183 0.87131 0.83814 0.76453 1.90826 1.70329 1.32172 1.51201 1.45800 1.07572 1.08553 1.74002 1.21170 0.78783 0.95245 1.02492 1.22423 0.94390 0.95024 0.99183 0.89322 1.21785 0.93322 0.89632 0.93936 1.44649 1.13581 1.19085 1.57873 1.19457 1.00237 0.94659 1.22862 0.89426 1.25671 0.96152 1.02210 1.01923 1.70148 1.05777 1.36627 1.47536 0.85140 0.76562 0.79045 0.78516 1.20117 1.22282 1.20251 1.21634 0.89091 0.92367 0.93431 1.22885 0.93356 0.96442 0.83659 0.90648 1.86390 1.27402 1.97008 1.26854 1.21285 0.92994 0.98254 0.97718 1.17416 0.89357 0.81973 1.05870 1.91537 1.79616 1.45804 1.93983 0.88564 0.88117 0.90303 0.80043 0.75014 0.91279 0.90902 0.95229 0.92344 0.94380 0.96171 0.96874 0.75711 0.81872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.82 71.23 0.70 -0.02 16 2 C -0.05 -0.63 5.89 -19.78 -0.12 -0.75 16 3 C -0.13 -1.65 9.66 22.28 0.22 -1.44 16 4 C 0.14 2.83 7.28 22.67 0.17 3.00 16 5 F -0.13 -3.36 15.55 44.97 0.70 -2.66 16 6 C -0.17 -3.63 5.88 -20.06 -0.12 -3.75 16 7 C 0.56 15.44 7.77 86.74 0.67 16.11 16 8 O -0.57 -20.07 15.34 -3.93 -0.06 -20.13 16 9 N -0.71 -17.47 5.36 -466.15 -2.50 -19.96 16 10 C 0.15 4.13 5.12 86.38 0.44 4.57 16 11 C -0.09 -2.93 2.83 -9.40 -0.03 -2.96 16 12 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 13 C 0.14 5.18 6.40 86.85 0.56 5.74 16 14 N -0.62 -30.99 3.40 -691.30 -2.35 -33.34 16 15 C -0.24 -13.26 10.28 84.03 0.86 -12.39 16 16 H 0.09 4.48 7.83 -2.91 -0.02 4.46 16 17 C -0.07 -3.72 5.49 84.86 0.47 -3.26 16 18 N -0.95 -56.49 10.33 21.65 0.22 -56.27 16 19 Si 0.98 44.93 29.55 68.60 2.03 46.96 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 23 C 0.16 7.71 5.16 86.68 0.45 8.15 16 24 C 0.10 3.49 3.80 31.78 0.12 3.61 16 25 H 0.08 2.48 8.04 -2.39 -0.02 2.46 16 26 O -0.57 -18.92 13.39 -148.98 -1.99 -20.92 16 27 C -0.08 -1.42 9.52 22.57 0.21 -1.20 16 28 C 0.07 1.13 7.23 22.33 0.16 1.30 16 29 F -0.13 -2.17 16.45 44.97 0.74 -1.43 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.10 0.22 8.08 -2.39 -0.02 0.20 16 32 H 0.08 0.52 7.62 -2.39 -0.02 0.50 16 33 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.41 8.26 6.37 -92.71 -0.59 7.67 16 35 H 0.07 2.02 8.10 -2.39 -0.02 2.00 16 36 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.03 1.10 8.00 -2.39 -0.02 1.08 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 40 H 0.02 1.11 7.31 -2.38 -0.02 1.09 16 41 H 0.01 0.70 7.51 -2.39 -0.02 0.68 16 42 H 0.39 10.10 9.12 -74.06 -0.68 9.43 16 43 H 0.16 2.24 6.40 -2.91 -0.02 2.23 16 Total: -1.00 -74.46 366.14 1.36 -73.10 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.19 Total: 17.94 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 4.76 Total: 16.72 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -4.63 Total: -109.57 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -2.05 Total: -41.05 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 1.44 Total: -4.09 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -74.46 1.36 -73.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958156385.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.528 kcal (2) G-P(sol) polarization free energy of solvation -74.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds